View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15480_low_2 (Length: 373)
Name: NF15480_low_2
Description: NF15480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15480_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 14538686 - 14538903
Alignment:
| Q |
2 |
ttcttgacggtgtaatcacaagatgtgttacgttggtaataacaacgttatgagtataagatgttggagactcactcactcttaacctaatgtgatgatc |
101 |
Q |
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| T |
14538686 |
ttcttgacggtgtaatcacaagacgtgttacgttggtaataacaacattaagagtataagatgttggagactcactcactcttaacctaatgtgatgatc |
14538785 |
T |
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| Q |
102 |
tcacgtgttttacacctcctctgaatttaggcatatatattgtaaaatctttttacaaattaacacaaaacatagtaagatttatactcttggtgcatag |
201 |
Q |
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| T |
14538786 |
tcacgtgtttaacacctcctctgaatttaggcatatatattgtaaaatctttttaaaaattaacacaatacatagtaagatttatagcgttggtgcatag |
14538885 |
T |
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| Q |
202 |
agatttatacaaaatata |
219 |
Q |
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| T |
14538886 |
agatttatacaaaatata |
14538903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 242 - 373
Target Start/End: Original strand, 14538966 - 14539097
Alignment:
| Q |
242 |
atcactttatatataaaaccaatcaatgaacattcataatcatacacacaaagtaacatttatacaagtgagtgagaatcttaccggtggtctactgtga |
341 |
Q |
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| T |
14538966 |
atcactttatatataaaaccaatcaatgatcattcataatcatacacacaaagtaccatttatacaagtgagtgagaatcttaccggtggtctactgtga |
14539065 |
T |
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| Q |
342 |
caaacagaatcatggtcgtctatggtggtggt |
373 |
Q |
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| T |
14539066 |
caaacagaatcatggtcgtctatggtggtggt |
14539097 |
T |
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