View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_high_12 (Length: 413)
Name: NF15481_high_12
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_high_12 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 22 - 337
Target Start/End: Complemental strand, 38388269 - 38387954
Alignment:
| Q |
22 |
ggtgcactgagtttgcagccaaagcaggaaagaatctaacatggccattttaattcggaaggattggagtttcttcttcctgacacgagctcgaaaagca |
121 |
Q |
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| T |
38388269 |
ggtgtactgagtttgcagccaaagtaggaaagaatctaacatggccatcttaattcggaaggatcagagtttcttcttcctgacacgagctcgaaaagca |
38388170 |
T |
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| Q |
122 |
tcattccgtagttgtaaacatcggatttagcggttatagaaactcccgaaatccactcatctggagctagatagcctcttgttcctctcatgggagtgag |
221 |
Q |
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| T |
38388169 |
tcattctgtagttgtaaacatcggctttagcggttatagaaactcccgaaatccactcatctggagctagatagcctcttgttcctctcatgggagtgag |
38388070 |
T |
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| Q |
222 |
gggacccggcagaagtcccttccgatcggcaattagttaatatataaactaattatcaaaagggctggcaattagtaattctcaatcattttctcaacca |
321 |
Q |
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| T |
38388069 |
gggacccggcagaagtcccttccgatcggcaattagttaatatataaactaattatcaaaagggctggcaattagtaattctcaatcattttctcaacca |
38387970 |
T |
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| Q |
322 |
ttttgtgctttgtagg |
337 |
Q |
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| T |
38387969 |
ttttgtgctttgtagg |
38387954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 373
Target Start/End: Complemental strand, 38387928 - 38387893
Alignment:
| Q |
338 |
cactgtagaactatatagtgctttgtatattacata |
373 |
Q |
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| T |
38387928 |
cactgtagaactatatagtgctttgtatattacata |
38387893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 32 - 246
Target Start/End: Complemental strand, 16408 - 16203
Alignment:
| Q |
32 |
gtttgcagccaaagcaggaaagaatctaacatggccattttaattcggaaggattggagtttcttcttcctgacacgagctcgaaaagcatcattccgta |
131 |
Q |
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| T |
16408 |
gtttgcagctaaggtaggaaagaatctaacatggccatcttca----gaaggatcggagtttcttctacctgacactagctcgaaaagcatcattccgta |
16313 |
T |
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| Q |
132 |
gttgtaaacatcggatttagcggttatagaaactcccgaaatccactcatctggagctagatagcctcttgttcctctcatgggagtgaggggacccggc |
231 |
Q |
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| T |
16312 |
gctgtaaacatcggctttagcggttatagcaactcctgaaatccac---tctggagctagatagcctcttgttcctctcatggtagtga--ggacccggc |
16218 |
T |
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| Q |
232 |
agaagtcccttccga |
246 |
Q |
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| T |
16217 |
tgaagtcccttccga |
16203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 271 - 337
Target Start/End: Original strand, 42647050 - 42647116
Alignment:
| Q |
271 |
taattatcaaaagggctggcaattagtaattctcaatcattttctcaaccattttgtgctttgtagg |
337 |
Q |
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| T |
42647050 |
taattatcaaaagtgctggcaattagtaattctcaatcattttctcaaccattttgtgctttgtagg |
42647116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 37766145 - 37766045
Alignment:
| Q |
111 |
ctcgaaaagcatcattccgtagttgtaaacatcggatttagcggttatagaaactcccgaaatccactcatctggagctagatagcctcttgttcctctc |
210 |
Q |
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| T |
37766145 |
ctcgaaaagcatcattccgtagctataaacatcagctttggctgtaatagccacgccagaaatccac---tccggagcaaggtagcctcttgttcctctc |
37766049 |
T |
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| Q |
211 |
atgg |
214 |
Q |
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|||| |
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| T |
37766048 |
atgg |
37766045 |
T |
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