View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_high_16 (Length: 362)
Name: NF15481_high_16
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 33760503 - 33760839
Alignment:
| Q |
10 |
aagaatatgacccacaagaatcaccttttcattttgtggaattgttgccattagcttcaacaatgtttcagagtattctgaaattgtatcaacatcttca |
109 |
Q |
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| T |
33760503 |
aagactatgacccacaagaatcaccttttcattttgcggaattgttgccattagcttcaacaatggttcagagtattctgaaattgtatcaacatcttca |
33760602 |
T |
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| Q |
110 |
agtttcttcaagttggttccagaagctgaaaggtcaattactgtgaccacatgaccagcagattctaaacgtggcttgatcttgtaccaactccaagcac |
209 |
Q |
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| T |
33760603 |
agtttcttcaagttggttccagaagctgaaaggtcaagtactgtaaccacatgaccagcagattctaaacgtggcttgatcttgtaccaactccaagcac |
33760702 |
T |
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| Q |
210 |
catggcaagcaccatgtacaagaacataatgcttcctagcaattaaattttgtgtactcataatgattattgttgttgtggtataatataaaatattgct |
309 |
Q |
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| T |
33760703 |
catggcaagcaccatgtacaagaacataatgcttcctagcaattaaattttgtgtactcataatgattattgttgttgtggtataatataaaatattgct |
33760802 |
T |
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| Q |
310 |
gcttaatattgttttcaccatccttatcctagagtat |
346 |
Q |
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| T |
33760803 |
gcttaatattgttttcaccatccttatcctagagtat |
33760839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 6833005 - 6832925
Alignment:
| Q |
161 |
tgaccagcagattctaaacgtggcttgatcttgtaccaactccaagcaccatggcaagcaccatgtacaagaacataatgc |
241 |
Q |
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| T |
6833005 |
tgaccagatgattctaaacgtggcttaagcttgtaccaattccaggcacccatgccagaaccatgtaccagaacaaaatgc |
6832925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 6842229 - 6842153
Alignment:
| Q |
168 |
cagattctaaacgtggcttgatcttgtaccaactccaagcaccatggcaagcaccatgtacaagaacataatgcttc |
244 |
Q |
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|||||||||| |||| || | |||||||||||||||||| ||| || | |||||||||| |||||| |||||||| |
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| T |
6842229 |
cagattctaactgtggtttaagcttgtaccaactccaagctccaacgctaacaccatgtactagaacaaaatgcttc |
6842153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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