View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_high_18 (Length: 341)
Name: NF15481_high_18
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 42185527 - 42185840
Alignment:
| Q |
18 |
gataattatattaaaggtcatgctaacaaattatttttagatatttgtttagaaatttaaaaagaaataaatgataagttttatgtataaaaacattaat |
117 |
Q |
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| T |
42185527 |
gataattatattaaaggtgatgctaacaaattatttttagacatttgtttagaaattttaaaa--aataaatgataagttttatgtataaaaacattaat |
42185624 |
T |
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| Q |
118 |
tttcaaagtttcaatatgtt-gaatgtataattattaagatatttatttt-agacttcttaataagtatcttttaacatttccactacaataatagagta |
215 |
Q |
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| T |
42185625 |
tttcaaagtttcaatatgttagaatgtataattattaagatatttttttttaaacttcttaataagtatcttttaacatttccactacaataatagagta |
42185724 |
T |
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| Q |
216 |
atgagatcttaagtataactattggaccttgaatctctgatgagtatcaaatttggcctagttgaagtttcaagttgaaacaagtccaaagacaaatgat |
315 |
Q |
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| T |
42185725 |
atgagatattaagtataactattggaccttgaatctccgatgagtatcaaattcggcctagttgaagtttcaagttgaaacaaatccaaagaaaaatgat |
42185824 |
T |
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| Q |
316 |
gaatactaatagaata |
331 |
Q |
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| T |
42185825 |
gcatagaaatagaata |
42185840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 12880180 - 12880121
Alignment:
| Q |
81 |
gaaataaatgataagttttatgtataaaaacattaattttcaaagtttcaatatgttgaat |
141 |
Q |
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| T |
12880180 |
gaaataattgataagttttatgtagaaaaa-attactttttaaaatttcaatgtgttgaat |
12880121 |
T |
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