View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_high_9 (Length: 442)
Name: NF15481_high_9
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 8881063 - 8881487
Alignment:
| Q |
1 |
tgagaatgatggatggagtgaaacatggatgctgtggatttattgagatcgatttgattgtgtcctaagaaacaaaacggtagatggcaaaggatgtata |
100 |
Q |
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| T |
8881063 |
tgagaatgatggatggagtgaaacatggatgctgtggatttattgagatcgatttgattgtgtcctaagaaacaaaacggtagatagcaaaggatgtata |
8881162 |
T |
|
| Q |
101 |
cctgccgaaccataaatccaaccacgaatttggtagctgcggaacatagttttgttaactagcatgcattgtctgaagctatattcttatggcattattg |
200 |
Q |
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| T |
8881163 |
cctgccgaaccataaatccaaccacgaatttggtagctgtggaacatagttttgttaactagcatgcattgtcagaagctatattcttatggcattattg |
8881262 |
T |
|
| Q |
201 |
tatacttgctgttcctatcacatgtgatgcaattaaagttaacatctataataagcagaacatcataagttggcatcgaaacacaaatcattgtcaacaa |
300 |
Q |
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| T |
8881263 |
tatacttgctgttcctatcacatgtgatgcaattaaagttaacatctataataagcagaacatcataagttggcatcgaaacacaaatcattgtcaacaa |
8881362 |
T |
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| Q |
301 |
taaatagttaataattaaatgaaaaaacccatatttatttcaaaatgggaggcatctaacacgtgaacaatttctatggactaaagtactaaacatggga |
400 |
Q |
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| T |
8881363 |
taaatagttaataattaaatgaaaaaacccatatttatttcaaaatgggaggcatctaacacgtgaacaatttctatggactaaagtactaaacatggga |
8881462 |
T |
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| Q |
401 |
agtgggaactatttaccaaaataac |
425 |
Q |
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| T |
8881463 |
agtgggaactatttaccaaaataac |
8881487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 8884141 - 8884201
Alignment:
| Q |
86 |
ggcaaaggatgtatacctgccgaaccataaatccaaccacgaatttggtagctgcggaaca |
146 |
Q |
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| T |
8884141 |
ggcaaaggatgtatacctgaagaaccacaaatcaaaccacgagtttattagctgcagaaca |
8884201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 45074201 - 45074363
Alignment:
| Q |
9 |
atggatggagtgaaacatggatgctgtggatttattgagatcgatttgattgtgtcctaagaaacaaaacggtagatggca------------aaggatg |
96 |
Q |
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| T |
45074201 |
atggatggagtgaaacatggatgctgtggatttattgagat----ttgattgt--cataagaaacaaaacggtagatatctcttttgagaattaaggatg |
45074294 |
T |
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| Q |
97 |
tatacctgccgaaccataaatccaaccacgaatttggtagctgcggaacatagttttgttaactagcat |
165 |
Q |
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| T |
45074295 |
tatacttaccaaaccatgaatccaaccacgaatttgttagctgtggaacatagttttgttaactagcat |
45074363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 45073546 - 45073605
Alignment:
| Q |
236 |
aagttaacatctataataagcagaacatcataagttggcatcgaaacacaaatcattgtc |
295 |
Q |
| |
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|||||||| || |||||||||||||||| ||||||| | || ||||||||||||||||| |
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| T |
45073546 |
aagttaacgtcaataataagcagaacatgataagttcccttccaaacacaaatcattgtc |
45073605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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