View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_low_1 (Length: 779)
Name: NF15481_low_1
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 576; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Complemental strand, 38446601 - 38446002
Alignment:
| Q |
1 |
tagatctataacactgtcgtttaaagatgaaactttgtcgaattgctttaactggaaatttgtagtgtcaaagaaacgatactgttgagatagatctcta |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38446601 |
tagatctatagcactgtcgtttaaagatgaaactttgtcgaattgctttaactggaaatttgtagtgtcaaagaaacgatactgttgagatagatctcta |
38446502 |
T |
|
| Q |
101 |
tgaaccgttgattcagaagcagatcttagaagcttagggtttggatcagagtcttccagacccatgagttttgcaacgacgctggtggaagtggaacgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38446501 |
tgaaccgttgattcagaagcagatcttagaagcttagggtttggatcagagtcttccagacccatgagttttgcaacgacgctggtggaagtggaacgtc |
38446402 |
T |
|
| Q |
201 |
gtcgtttttcttcttctttaggatggatagtcattgttccttttgcatctacaatagctctactatccaacgaaagtcttggaacttctctggtgaattt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
38446401 |
gtcgtttttcttcttctttaggatggatagtcattgttccttttgcatctacaatagctctgctatccaacgaaagtcttggagcttctctggtgaattt |
38446302 |
T |
|
| Q |
301 |
ccatggagatttcgttccttctttgaaatcaaaaacaggaagaaccgatgtcttttctggttgcggtgttgatgtttcagctggtgagttaccgtttgtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38446301 |
ccatggagatttcgttccttctttgaaatcaaaaaccggaagaaccgatgtcttttctggttgcggtattgatgtttcagctggtgagttaccgtttgtt |
38446202 |
T |
|
| Q |
401 |
tccggttcctgtaaaaatatgaaatcgttaaaacgaggatgaagtatgagagtgaaagtatgatatgaatgaatgaattgataccgttgatattgaagaa |
500 |
Q |
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| T |
38446201 |
tccggttcctgtaaaaatatgaaatcgttaaaacaaggatgaagtatgagagtgaaagtatgatatgaatgaatgaattgataccgttgatattgaagaa |
38446102 |
T |
|
| Q |
501 |
gggagtcttttaacggagtagatgcgttttcctgggtggcgatcgaagatgtgaaagaaacctgacatgcaccctatttgtttttggatttgtttctcaa |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38446101 |
gggagtcttttaacggagtagatgcgttttcctgggtggcgatcgaagatgtgaaagaaacctgacatgcaccctatttgtttttggatttgtttctcaa |
38446002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 667 - 768
Target Start/End: Complemental strand, 38445935 - 38445835
Alignment:
| Q |
667 |
caatattgtgaagagtttctcacattctgttctgctgcttctctgttcctagctctgttttcttaactctgtagtatgtatgtagtcactctttcttcct |
766 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
38445935 |
caatattgtgaagagtttctcacattctgttctgctgcttctctgttcctagctctg-tttctcaactctgtagtatgtatgtggtcactctttcttcct |
38445837 |
T |
|
| Q |
767 |
tt |
768 |
Q |
| |
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|| |
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| T |
38445836 |
tt |
38445835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 7e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 185 - 378
Target Start/End: Complemental strand, 20210329 - 20210136
Alignment:
| Q |
185 |
gtggaagtggaacgtcgtcgtttttcttcttctttaggatggatagtcattgttccttttgcatctacaatagctctactatccaacgaaagtcttggaa |
284 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||| |||| || |||||||||||||||||||||||| ||| | ||||| ||||| ||||||||| |
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| T |
20210329 |
gtggaagtggaacatcgtcgtttttcttcctcttttagatgaattttcattgttccttttgcatctacaacggcttttctatctaacgatagtcttggag |
20210230 |
T |
|
| Q |
285 |
cttctctggtgaatttccatggagatttcgttccttctttgaaatcaaaaacaggaagaaccgatgtcttttctggttgcggtgttgatgtttc |
378 |
Q |
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| T |
20210229 |
cttctttggtggatttccatggagattttgttccttctttgaaatcgaaaactggaagaaccattgtcttttcaggttaaggtgttgatgtttc |
20210136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 20210436 - 20210338
Alignment:
| Q |
40 |
gaattgctttaactggaaatttgtagtgtcaaagaaacgatactgttgagat---agatctctatgaaccgttgattcagaagcagatcttagaagctt |
135 |
Q |
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||||||||| || |||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
20210436 |
gaattgcttaaattggaaatttgtagtgtcaaagaaatgatattgttgagatgttagatctctttgaaccgttgattcagaagcaaatcttagaagctt |
20210338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 204 - 377
Target Start/End: Original strand, 2243189 - 2243362
Alignment:
| Q |
204 |
gtttttcttcttctttaggatggatagtcattgttccttttgcatctacaatagctctactatccaacgaaagtcttggaacttctctggtgaatttcca |
303 |
Q |
| |
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|||||||||| ||||| ||||||| | |||||||||||||||||||||| ||||| ||||| ||||| ||||| || ||||||||||||||||||| |
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| T |
2243189 |
gtttttcttcctctttttgatggatttttattgttccttttgcatctacaacggctctgctatcaaacgatggtcttagagcttctctggtgaatttcca |
2243288 |
T |
|
| Q |
304 |
tggagatttcgttccttctttgaaatcaaaaacaggaagaaccgatgtcttttctggttgcggtgttgatgttt |
377 |
Q |
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|| |||||| ||||||| |||||||| ||||| ||||||| | |||||||||||||| ||||||||||||| |
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| T |
2243289 |
tgaagattttgttccttatttgaaattgaaaactggaagaattggtgtcttttctggttaaggtgttgatgttt |
2243362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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