View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15481_low_14 (Length: 403)

Name: NF15481_low_14
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15481_low_14
NF15481_low_14
[»] chr1 (12 HSPs)
chr1 (3-387)||(10978943-10979327)
chr1 (3-387)||(10903048-10903432)
chr1 (3-387)||(10914208-10914592)
chr1 (33-387)||(11028714-11029070)
chr1 (5-284)||(10932590-10932870)
chr1 (20-387)||(11010535-11010893)
chr1 (91-386)||(10993814-10994109)
chr1 (111-387)||(11005129-11005405)
chr1 (136-387)||(11032933-11033184)
chr1 (136-387)||(11007480-11007731)
chr1 (111-288)||(10901380-10901557)
chr1 (280-387)||(10974142-10974249)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 3 - 387
Target Start/End: Original strand, 10978943 - 10979327
Alignment:
Q  3 aattcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaac 102  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| ||||    
T  10978943 aattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaac 10979042  T
Q  103 atcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaa 202  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10979043 atcctctactggtggatcttgtaaacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaa 10979142  T
Q  203 ggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttcctgatctgtgtcatttccaatcgttactt 302  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  10979143 ggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgttactt 10979242  T
Q  303 cccttccatcatgtatctgatcataaatccaaaaagggaaataaatttggctagattgctcagctaatgcattcaagttcttcct 387  Q
    |||||||||||||||   ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||    
T  10979243 cccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctcct 10979327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 387
Target Start/End: Original strand, 10903048 - 10903432
Alignment:
Q  3 aattcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaac 102  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||| ||||||||||| |||||| ||||||| ||||    
T  10903048 aattcagccaagaaccaaaaagagattaggttggtcccttgggatcactaattgatgtaccataggaagtccatgagttgctattattatcatctccaac 10903147  T
Q  103 atcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaa 202  Q
     ||  ||  ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  10903148 gtctgctgttggtggatcttgtggacaaaagtaaggcttattaggaatttgtaagtccccatcttctttttcaagcatctccaaaactttatccattgaa 10903247  T
Q  203 ggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttcctgatctgtgtcatttccaatcgttactt 302  Q
    |||||||| | ||||||||| || |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  10903248 ggacgatcctcgggttttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagttactt 10903347  T
Q  303 cccttccatcatgtatctgatcataaatccaaaaagggaaataaatttggctagattgctcagctaatgcattcaagttcttcct 387  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  10903348 cccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttggctagattgttcggccaatgcattcaagttcttcct 10903432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 3 - 387
Target Start/End: Original strand, 10914208 - 10914592
Alignment:
Q  3 aattcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaac 102  Q
    |||||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||| ||| ||  || ||||||| ||||    
T  10914208 aattcaaccaagaaccagaaagagatcaggttggtcccttgggataactaactgatgtaccataagaagtccatgaattgctacaattatcatctccaac 10914307  T
Q  103 atcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaa 202  Q
    |||  ||  ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  10914308 atctgctgttggtggatcttgtggacaaaaataaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttttccattgaa 10914407  T
Q  203 ggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttcctgatctgtgtcatttccaatcgttactt 302  Q
    |||||||| |  |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  10914408 ggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagttactt 10914507  T
Q  303 cccttccatcatgtatctgatcataaatccaaaaagggaaataaatttggctagattgctcagctaatgcattcaagttcttcct 387  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||  |||||||| ||||| ||||||||||| ||||||||    
T  10914508 cccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttcactagattgatcagccaatgcattcaaattcttcct 10914592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 33 - 387
Target Start/End: Complemental strand, 11029070 - 11028714
Alignment:
Q  33 ttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaacatcctctactggtggatcttgtagacagaa 132  Q
    |||||| ||||| ||| ||||||||||||||||| ||| ||||||||||| || ||| |||  || |||||||||||||| ||||||||||  |||| ||    
T  11029070 ttggtcacttgggatcgctaactgatgtaccataggaagtccatgagttgctactattatcgactccaacatcctctactagtggatcttgcggacaaaa 11028971  T
Q  133 gtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacac 232  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| || ||||||    
T  11028970 gtaaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcctctggttttgtttgtatacac 11028871  T
Q  233 cacaaagccacaatcatcattttctttgccaatttcatttcctgatctgtgtcatttccaatcg--ttacttcccttccatcatgtatctgatcataaat 330  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |   ||||||||||||||||||||   ||||||||||    
T  11028870 cacaaagccgcagtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagatatacttcccttccatcatgtaatcgatcataaat 11028771  T
Q  331 ccaaaaagggaaataaatttggctagattgctcagctaatgcattcaagttcttcct 387  Q
    ||| |||||||||||||||||||||||||| ||||| ||||||||| | ||||||||    
T  11028770 ccagaaagggaaataaatttggctagattgttcagccaatgcattctaattcttcct 11028714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 284
Target Start/End: Original strand, 10932590 - 10932870
Alignment:
Q  5 ttcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaacat 104  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| || ||  || |||| ||||||    
T  10932590 ttcaaccaagaaccaaaaagagattaggttggtcccttgggatcactaactgatgtaccataggaagtccatgagttgctactactattatctccaacat 10932689  T
Q  105 cctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcc-aaaactttatccattgaag 203  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  10932690 cctctactggtggatcttgtggacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcctaaaactttttccattgaag 10932789  T
Q  204 gacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttcctgatctgtgt 284  Q
    ||||||| | ||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10932790 gacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttcatttcctgatctgtgt 10932870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 11010535 - 11010893
Alignment:
Q  20 aaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaacatcctctactggtggat 119  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||  ||| ||||||||||| || | | |         |||||| ||| ||||| ||    
T  11010535 aaaagagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgtaa---------acatccgctattggtgaat 11010625  T
Q  120 cttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcgttgggttt 219  Q
    ||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||    
T  11010626 cttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcatcaggttt 11010725  T
Q  220 tgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttcctgatctgtgtcatttccaatcgttacttcccttccatcatgtatc 319  Q
    |||||| |||||||| || ||||||||||||||||||||||| |  |||||||||||||||||||| ||  |||| |||||||| ||||||||||| |      
T  11010726 tgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttacttcacttccatcatgaaat 11010825  T
Q  320 tgatcataaatccaaaaagggaaataaatttggctagattgctcagctaatgcattcaagttcttcct 387  Q
    | |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  11010826 ttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttcct 11010893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 91 - 386
Target Start/End: Complemental strand, 10994109 - 10993814
Alignment:
Q  91 atcatctgcaacatcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaact 190  Q
    |||||||  |||||| ||| |||||  ||||||| || | | ||||||||||||||| |||||||| |||||||||||||||||||||||||| |  |||    
T  10994109 atcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcact 10994010  T
Q  191 ttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttcctgatctgtgtcatttc 290  Q
    ||||||||||||||||||||  | |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||||||||      
T  10994009 ttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattct 10993910  T
Q  291 caatcgttacttcccttccatcatgtatctgatcataaatccaaaaagggaaataaatttggctagattgctcagctaatgcattcaagttcttcc 386  Q
    |||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10993909 caattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaatgcattcaagttcttcc 10993814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 111 - 387
Target Start/End: Complemental strand, 11005405 - 11005129
Alignment:
Q  111 ctggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatc 210  Q
    ||||| |||||||| || | | ||||||||||||||| |||||||| |||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  11005405 ctggtagatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatc 11005306  T
Q  211 gttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttcctgatctgtgtcatttccaatcgttacttcccttcca 310  Q
        ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||  |||| |||||||| ||||||    
T  11005305 acctggttttgtctgtatacaccataaagccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattctcaattgttacttcacttcca 11005206  T
Q  311 tcatgtatctgatcataaatccaaaaagggaaataaatttggctagattgctcagctaatgcattcaagttcttcct 387  Q
    ||||||| |||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||    
T  11005205 tcatgtaactgaccataaatccaaaaagggaaataaatttggcaagattgctcagccaatggattcaagttcttcct 11005129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 136 - 387
Target Start/End: Original strand, 11032933 - 11033184
Alignment:
Q  136 aggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccac 235  Q
    |||||||||||| |||||||| ||  ||||||||||||||||||||||||| ||||||||||||| |||||||||  | ||||| | |||||||||||||    
T  11032933 aggcttattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcctgaatacaccac 11033032  T
Q  236 aaagccacaatcatcattttctttgccaatttcatttcctgatctgtgtcatttccaatcgttacttcccttccatcatgtatctgatcataaatccaaa 335  Q
    |||||||| ||||||||||||||||||||||||||||| |||| ||| |||||   ||| || | |||||||||||| |||| ||||||||||| |||||    
T  11033033 aaagccactatcatcattttctttgccaatttcatttcatgatttgtatcattcagaattgtcatttcccttccatcttgtaactgatcataaacccaaa 11033132  T
Q  336 aagggaaataaatttggctagattgctcagctaatgcattcaagttcttcct 387  Q
    ||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||    
T  11033133 aagggaaataaatctggcttgattgatcagccaatgcattcaagttcttcct 11033184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 136 - 387
Target Start/End: Original strand, 11007480 - 11007731
Alignment:
Q  136 aggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccac 235  Q
    ||||| |||||| |||||||| ||  ||||||||||||||||||||||||| ||||||||||||| |||||||||  | ||||| |  ||||||||||||    
T  11007480 aggctgattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcttgaatacaccac 11007579  T
Q  236 aaagccacaatcatcattttctttgccaatttcatttcctgatctgtgtcatttccaatcgttacttcccttccatcatgtatctgatcataaatccaaa 335  Q
    |||||||| |||||||||||||||||||||||||| || |||| |||  ||||  |||| |||| ||| |||||||| |||| ||||||||||| |||||    
T  11007580 aaagccactatcatcattttctttgccaatttcatctcatgatttgtagcattctcaattgttatttctcttccatcttgtaactgatcataaacccaaa 11007679  T
Q  336 aagggaaataaatttggctagattgctcagctaatgcattcaagttcttcct 387  Q
    ||||||||||||  |||||||||||  |||| ||| ||| ||||||||||||    
T  11007680 aagggaaataaacctggctagattgaccagccaatacatccaagttcttcct 11007731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 288
Target Start/End: Original strand, 10901380 - 10901557
Alignment:
Q  111 ctggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatc 210  Q
    ||||| |||||||| || | | ||||||||| ||||| |||||||| ||||||||||||| | |||||||||| |  |||||||||||||||||||||||    
T  10901380 ctggtagatcttgtggataaaggtaaggcttcttaggcatttgcaaatccccatcttcttatgcaagcatctcaatcactttatccattgaaggacgatc 10901479  T
Q  211 gttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttcctgatctgtgtcatt 288  Q
      | |||||||||||| ||||||| || |||||||||||| |||||||||||||||||||||| | ||||||||||||    
T  10901480 actaggttttgtctgagtacaccataatgccacaatcatcgttttctttgccaatttcatttcttcatctgtgtcatt 10901557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 280 - 387
Target Start/End: Original strand, 10974142 - 10974249
Alignment:
Q  280 tgtgtcatttccaatcgttacttcccttccatcatgtatctgatcataaatccaaaaagggaaataaatttggctagattgctcagctaatgcattcaag 379  Q
    |||||||||| |||| | ||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||| || || |||||||||||     
T  10974142 tgtgtcattttcaatagatacttcccttccatcatgtaatcgatcataaatccagaaagggaaataaatttggctagattgatcggccaatgcattcaaa 10974241  T
Q  380 ttcttcct 387  Q
    ||||||||    
T  10974242 ttcttcct 10974249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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