View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_low_16 (Length: 372)
Name: NF15481_low_16
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 39280718 - 39281071
Alignment:
| Q |
1 |
tctctctgcacatttccaatctcttcaaaacacaaaccaattccaccacttctccaaaaccaagacagcccagtttctccctctccccaaattctttaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39280718 |
tctctctgcacatttccaatctcttcaaaacacaaaccaattccaccacttctccaaaaccaagacagcccagtttctccctctccccaaattcattaac |
39280817 |
T |
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| Q |
101 |
tctaaccaaaacttcattcatcaccataaccccatcatcttccaccaaatccattatctcaacaaccaccttgttctgttcactcattggagtattaggt |
200 |
Q |
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| T |
39280818 |
tctaaccaaaacttcattcatcaccataaccccatcatcttccaccaaatccattatctcaacaaccaccttgttctgttcactcattggagtattaggt |
39280917 |
T |
|
| Q |
201 |
tttttcccaattccttccatcaaggccaacaaagaatcagtttctcttaacagatcactattggtaagataagaaactcctttctctggcatagtttcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
39280918 |
tttttcccaattccttccatcaaggccaacaaagaatcagtttctcttaacagatcactattggtaagataagaaactcctttctctggcgtcgtttcac |
39281017 |
T |
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| Q |
301 |
cgaggaagaaaccaagagttctagaagtacacagaaggttttcaatgtattccg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39281018 |
cgaggaagaaaccaagagttctagaagtacacagaaggttttcaatgtattccg |
39281071 |
T |
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