View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_low_23 (Length: 336)
Name: NF15481_low_23
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 42010417 - 42010566
Alignment:
| Q |
16 |
ctattgaacggttccatatcttccaaatagatatggcaatagatgacttatatttcattcctctaaagtgaagagtcactgaaaaatactaaagttataa |
115 |
Q |
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| T |
42010417 |
ctattgaatggttccatatcttccaaatagatatggcaatagatgacttatatttcattc------------------ctgaaaaatattaaagttataa |
42010498 |
T |
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| Q |
116 |
atcattgatcaaagagnnnnnnnngaacgattgattaaagggttgatgagtgccacttgaaatcacac |
183 |
Q |
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| T |
42010499 |
atcattgatcaaagagttttttttgaacgattgattaaagggttgatgagtgccacttgaaatcacac |
42010566 |
T |
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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 42010658 - 42010712
Alignment:
| Q |
274 |
caattctttctaaaatgacacttgcctataaattctcacttgactcaacctgggttt |
330 |
Q |
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| T |
42010658 |
caattctttctaaaatgacacttgcctataaat--tcacttgactcaacctgggttt |
42010712 |
T |
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