View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_low_25 (Length: 332)
Name: NF15481_low_25
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 42205319 - 42205006
Alignment:
| Q |
1 |
aggtgccctttatgcaaggaatggataaggtattcatgaagtaattaatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205319 |
aggtgccctttatgcaaggaatggataaggtattcatgaagtaattaatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttc |
42205220 |
T |
|
| Q |
101 |
cttttgcagtaatagattcccctactctgtgaacatagctctttgggacgcagtgcaattcttgtttcctaatgaagttaaatcgcggaaagcagttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205219 |
cttttgcagtaatagattcccctactctgtgaacatagctctttgggacgcagtgcaattcttgtttcctaatgaagttaaatcgcggaaagcagttgat |
42205120 |
T |
|
| Q |
201 |
gcctcaaatatatcaaaaggaataagtagacagccatctgagatgcctccattagatgcctttctacagaaattcgatcgtgtgatgttagcttgtcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
42205119 |
gcctcaaatatatcaaaaggaataagtagacagccatctgagatgcctccattagatgcctttctacagacattcgatcgtgtgatgttagctgctcttg |
42205020 |
T |
|
| Q |
301 |
ctcttggactgcct |
314 |
Q |
| |
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|||||||||||||| |
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| T |
42205019 |
ctcttggactgcct |
42205006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 42214187 - 42213874
Alignment:
| Q |
1 |
aggtgccctttatgcaaggaatggataaggtattcatgaagtaattaatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214187 |
aggtgccctttatgcaaggaatggataaggtattcatgaagtaattaatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttc |
42214088 |
T |
|
| Q |
101 |
cttttgcagtaatagattcccctactctgtgaacatagctctttgggacgcagtgcaattcttgtttcctaatgaagttaaatcgcggaaagcagttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214087 |
cttttgcagtaatagattcccctactctgtgaacatagctctttgggacgcagtgcaattcttgtttcctaatgaagttaaatcgcggaaagcagttgat |
42213988 |
T |
|
| Q |
201 |
gcctcaaatatatcaaaaggaataagtagacagccatctgagatgcctccattagatgcctttctacagaaattcgatcgtgtgatgttagcttgtcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
42213987 |
gcctcaaatatatcaaaaggaataagtagacagccatctgagatgcctccattagatgcctttctacagacattcgatcgtgtgatgttagctgctcttg |
42213888 |
T |
|
| Q |
301 |
ctcttggactgcct |
314 |
Q |
| |
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|||||||||||||| |
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| T |
42213887 |
ctcttggactgcct |
42213874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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