View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_low_29 (Length: 296)
Name: NF15481_low_29
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 86 - 277
Target Start/End: Complemental strand, 30223406 - 30223215
Alignment:
| Q |
86 |
ccaactaataaaaccttatgtaaccgtaaattagtctttaacatatatgttagttggtgcagcgtcctaaagattcctttgtacaaggtaatttgttcat |
185 |
Q |
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| T |
30223406 |
ccaactaataaaaccttatgtaaccgtaaattagtctttaacatatatgttagttggtgcagcgtcctaaagattcctttgtacaaggtaatttgttcat |
30223307 |
T |
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| Q |
186 |
gaacagtggtgcttaactgtattgaaatgcctctgttagttggatccatgttgtttaattgaagttgtccattattgtattcatttaatatt |
277 |
Q |
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| T |
30223306 |
gaacagtggtgcttaactgtattgaaatgcctctgttagttggatccatgttgtttaattgaagttgtccattattgtattcatttaatatt |
30223215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 30224360 - 30224292
Alignment:
| Q |
18 |
caaaccttacatatcaaaaccgcatattgtctcctatttaaattgtttgctcctttacaaaattgtagc |
86 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30224360 |
caaaccttaaatatcaaaaccgcatattgtctcctatttaaattgtttgctcctttacaaaattgtagc |
30224292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 41941600 - 41941704
Alignment:
| Q |
149 |
gtcctaaagattcctttgtacaaggtaatttgttcatgaacagtggtgcttaactgtattgaaatgcctctgttagttggatccatgttgtttaattgaa |
248 |
Q |
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| T |
41941600 |
gtcctaaagattcctctatacaaggtaatttatccgtgaactgtggtacttcactgtatttaaatgcctctgttagttggatccatgttgtgtaattgaa |
41941699 |
T |
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| Q |
249 |
gttgt |
253 |
Q |
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||||| |
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| T |
41941700 |
gttgt |
41941704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 9634620 - 9634580
Alignment:
| Q |
209 |
gaaatgcctctgttagttggatccatgttgtttaattgaag |
249 |
Q |
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| T |
9634620 |
gaaatgcctatgttagttggatccatgttgtttaattgaag |
9634580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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