View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_low_31 (Length: 281)
Name: NF15481_low_31
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 2488423 - 2488685
Alignment:
| Q |
1 |
acaaaagacattgatttgatgattggaaaattcacttgcaggttctactttatgtgtcaaagacctatcccattgttctatatctgcgggatgctgataa |
100 |
Q |
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| T |
2488423 |
acaaaagacattgatttgatgattggaaaattcacttgcaggttctactttatgtgtcaaagacctatcccattgttctatatatgcgggatgctgataa |
2488522 |
T |
|
| Q |
101 |
gttgttgtgtagatcacaaaggatatataaactattccagacaatgttaacgaaactatctggaccaattttgattattggttcgcggattttggattct |
200 |
Q |
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| T |
2488523 |
gttgttgtgtagatcacaaaggatatataaactattccagacaatgttaacgaaactatctggaccaattttgattattggttcgcggattttggattct |
2488622 |
T |
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| Q |
201 |
ggtaatgaatgcaaaagagtagatgagatgcttacctctctcttcccttacaacatagaaatc |
263 |
Q |
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| T |
2488623 |
ggtaatgaatgcaaaagagtagatgagatgcttacctctctcttcccttacaacatagaaatc |
2488685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 41592747 - 41592541
Alignment:
| Q |
4 |
aaagacattgatttgatgattggaaaattcacttgcaggttctactttatgtgtcaaagacctatcccattgttctatatctgcgggatgctgataagtt |
103 |
Q |
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|||||||| |||||| | |||||| || |||||||||||||||||| ||||||||| || ||||||||||| ||||||||| |||||| ||||| ||| |
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| T |
41592747 |
aaagacatggatttggtaattggacgttttacttgcaggttctactttctgtgtcaaaaacttatcccattgtgctatatctgagggatgttgataggtt |
41592648 |
T |
|
| Q |
104 |
gttgtgtagatcacaaaggatatataaactattccagacaatgttaacgaaactatctggaccaattttgattattggttcgcggattttggattctggt |
203 |
Q |
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|| | ||||||||||| ||||||||| | ||||| | |||||| | || ||| |||||||| ||| ||||| |||||||||| || | ||||||||| |
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| T |
41592647 |
attatctagatcacaaaagatatataacatgttccaaaaaatgttgaagagactctctggaccgattctgattcttggttcgcgagttctagattctggt |
41592548 |
T |
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| Q |
204 |
aatgaat |
210 |
Q |
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||||||| |
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| T |
41592547 |
aatgaat |
41592541 |
T |
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