View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15481_low_34 (Length: 266)

Name: NF15481_low_34
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15481_low_34
NF15481_low_34
[»] chr1 (62 HSPs)
chr1 (9-266)||(16531169-16531427)
chr1 (22-162)||(23343595-23343735)
chr1 (22-162)||(35585894-35586034)
chr1 (17-161)||(14771758-14771902)
chr1 (22-162)||(15355776-15355916)
chr1 (22-162)||(17685321-17685461)
chr1 (22-162)||(38044196-38044336)
chr1 (22-161)||(37779225-37779364)
chr1 (22-158)||(39856235-39856371)
chr1 (22-162)||(49260671-49260811)
chr1 (22-161)||(35186080-35186219)
chr1 (5-162)||(24269342-24269499)
chr1 (52-157)||(19261523-19261628)
chr1 (22-161)||(18974393-18974529)
chr1 (22-161)||(26494540-26494676)
chr1 (31-161)||(31451454-31451584)
chr1 (22-161)||(42570779-42570915)
chr1 (22-158)||(29437019-29437151)
chr1 (22-161)||(24363055-24363191)
chr1 (22-161)||(35525185-35525320)
chr1 (25-162)||(13284538-13284675)
chr1 (22-161)||(13634407-13634543)
chr1 (22-157)||(41803312-41803444)
chr1 (25-101)||(12790265-12790341)
chr1 (22-161)||(46142443-46142578)
chr1 (22-161)||(48227593-48227729)
chr1 (22-161)||(49428421-49428557)
chr1 (22-161)||(6436795-6436938)
chr1 (22-161)||(13974008-13974144)
chr1 (25-152)||(49925440-49925564)
chr1 (22-94)||(40532369-40532441)
chr1 (22-76)||(14172748-14172802)
chr1 (22-84)||(29761168-29761230)
chr1 (26-84)||(36911036-36911094)
chr1 (22-84)||(51270959-51271021)
chr1 (22-157)||(27485711-27485842)
chr1 (22-161)||(49397728-49397864)
chr1 (22-75)||(26634196-26634249)
chr1 (179-265)||(17373490-17373568)
chr1 (29-84)||(44336913-44336968)
chr1 (200-265)||(27485875-27485940)
chr1 (200-265)||(29761322-29761387)
chr1 (200-265)||(41803212-41803277)
chr1 (200-265)||(51270801-51270866)
chr1 (209-264)||(22528466-22528521)
chr1 (201-260)||(26494452-26494511)
chr1 (199-266)||(35586047-35586114)
chr1 (200-263)||(46142607-46142670)
chr1 (211-265)||(13284443-13284497)
chr1 (199-265)||(38044348-38044414)
chr1 (199-265)||(39856387-39856453)
chr1 (209-262)||(14172919-14172972)
chr1 (191-260)||(31451621-31451690)
chr1 (212-265)||(36910869-36910922)
chr1 (200-265)||(42570944-42571009)
chr1 (200-265)||(48227499-48227564)
chr1 (199-260)||(49260834-49260895)
chr1 (200-265)||(49428327-49428392)
chr1 (237-265)||(12790472-12790500)
chr1 (224-264)||(14771984-14772024)
chr1 (196-260)||(15355938-15356002)
chr1 (201-253)||(24363225-24363277)
[»] chr7 (38 HSPs)
chr7 (22-262)||(1641673-1641913)
chr7 (12-265)||(4230447-4230701)
chr7 (22-162)||(43350383-43350523)
chr7 (22-162)||(22291924-22292064)
chr7 (22-162)||(42736069-42736208)
chr7 (22-161)||(42683485-42683621)
chr7 (23-102)||(20877016-20877095)
chr7 (22-161)||(48271733-48271869)
chr7 (22-162)||(17184278-17184417)
chr7 (22-161)||(36392812-36392948)
chr7 (27-145)||(27316952-27317070)
chr7 (22-161)||(9366228-9366364)
chr7 (17-161)||(15900392-15900530)
chr7 (22-161)||(17840281-17840417)
chr7 (22-161)||(20565721-20565857)
chr7 (22-161)||(41623163-41623299)
chr7 (22-161)||(42504366-42504502)
chr7 (22-161)||(46861186-46861322)
chr7 (22-158)||(21186285-21186418)
chr7 (25-161)||(34157762-34157895)
chr7 (22-95)||(3380050-3380123)
chr7 (22-84)||(28113397-28113459)
chr7 (22-161)||(28978224-28978360)
chr7 (22-157)||(34141937-34142069)
chr7 (35-135)||(16886001-16886101)
chr7 (22-84)||(45362284-45362346)
chr7 (22-82)||(48194123-48194183)
chr7 (41-139)||(41934468-41934565)
chr7 (22-81)||(40589896-40589955)
chr7 (22-161)||(10225152-10225288)
chr7 (218-262)||(15900588-15900633)
chr7 (200-262)||(46861350-46861412)
chr7 (212-265)||(41623069-41623122)
chr7 (200-265)||(42683391-42683456)
chr7 (200-265)||(48193964-48194029)
chr7 (200-265)||(48271639-48271704)
chr7 (237-265)||(17184173-17184201)
chr7 (237-265)||(28113592-28113620)
[»] chr4 (51 HSPs)
chr4 (22-264)||(21410968-21411215)
chr4 (17-161)||(25145611-25145755)
chr4 (22-264)||(21412230-21412478)
chr4 (22-162)||(51026780-51026920)
chr4 (17-265)||(9718230-9718479)
chr4 (12-162)||(4910615-4910765)
chr4 (9-162)||(2774098-2774250)
chr4 (9-162)||(36775461-36775614)
chr4 (22-161)||(24076204-24076343)
chr4 (22-162)||(21170557-21170697)
chr4 (22-158)||(49790921-49791057)
chr4 (22-162)||(45940619-45940759)
chr4 (12-144)||(17292760-17292895)
chr4 (22-161)||(34152275-34152411)
chr4 (22-161)||(41793913-41794049)
chr4 (22-157)||(37867536-37867668)
chr4 (22-161)||(6176426-6176562)
chr4 (179-263)||(10315455-10315540)
chr4 (22-161)||(21016288-21016424)
chr4 (22-161)||(49095705-49095841)
chr4 (22-161)||(55797703-55797839)
chr4 (22-102)||(43888482-43888562)
chr4 (22-161)||(40352887-40353023)
chr4 (22-157)||(56139979-56140111)
chr4 (22-102)||(49816405-49816485)
chr4 (22-161)||(956443-956579)
chr4 (22-161)||(44559316-44559452)
chr4 (22-158)||(51427190-51427324)
chr4 (22-76)||(42887443-42887497)
chr4 (22-161)||(6281514-6281650)
chr4 (22-161)||(49572182-49572318)
chr4 (22-84)||(4784332-4784394)
chr4 (74-162)||(47871145-47871233)
chr4 (22-161)||(49422747-49422879)
chr4 (22-80)||(34528809-34528867)
chr4 (22-84)||(39589915-39589977)
chr4 (22-82)||(9490623-9490683)
chr4 (22-84)||(1043879-1043941)
chr4 (223-265)||(4784529-4784572)
chr4 (200-265)||(1043720-1043785)
chr4 (200-265)||(56139881-56139946)
chr4 (209-265)||(49422919-49422975)
chr4 (201-265)||(49816578-49816642)
chr4 (200-263)||(44559481-44559544)
chr4 (28-102)||(17054415-17054489)
chr4 (200-265)||(956608-956673)
chr4 (199-260)||(2774025-2774086)
chr4 (200-265)||(9490453-9490518)
chr4 (200-265)||(34528963-34529028)
chr4 (200-265)||(39589758-39589823)
chr4 (237-265)||(4784571-4784599)
[»] chr5 (37 HSPs)
chr5 (12-162)||(7400789-7400939)
chr5 (22-162)||(7484484-7484624)
chr5 (22-162)||(1972455-1972595)
chr5 (17-161)||(8531269-8531413)
chr5 (22-161)||(6792438-6792577)
chr5 (22-162)||(4723082-4723220)
chr5 (22-161)||(3602423-3602558)
chr5 (22-161)||(18309341-18309477)
chr5 (22-161)||(34682919-34683055)
chr5 (22-161)||(38855116-38855252)
chr5 (22-125)||(10978405-10978508)
chr5 (21-161)||(25499162-25499299)
chr5 (22-161)||(11028409-11028545)
chr5 (22-161)||(19035787-19035923)
chr5 (17-142)||(31239103-31239228)
chr5 (9-161)||(1399280-1399429)
chr5 (22-158)||(35566355-35566488)
chr5 (22-161)||(8575253-8575389)
chr5 (22-102)||(1695946-1696026)
chr5 (34-121)||(13130382-13130469)
chr5 (22-161)||(27660489-27660625)
chr5 (22-82)||(35927072-35927132)
chr5 (22-114)||(36349295-36349386)
chr5 (22-120)||(20199459-20199557)
chr5 (22-161)||(6342-6478)
chr5 (22-161)||(11347762-11347898)
chr5 (22-161)||(30710561-30710697)
chr5 (26-144)||(31488912-31489030)
chr5 (22-161)||(8538939-8539074)
chr5 (201-265)||(35927236-35927300)
chr5 (200-265)||(20197064-20197129)
chr5 (200-265)||(34683084-34683149)
chr5 (199-266)||(6792603-6792670)
chr5 (199-265)||(1695800-1695866)
chr5 (127-161)||(20197158-20197192)
chr5 (200-265)||(3602331-3602396)
chr5 (237-265)||(7484701-7484729)
[»] chr8 (29 HSPs)
chr8 (22-162)||(26487534-26487674)
chr8 (22-162)||(42167928-42168068)
chr8 (23-161)||(38032897-38033035)
chr8 (22-161)||(28167875-28168011)
chr8 (22-161)||(484365-484501)
chr8 (22-161)||(18439290-18439426)
chr8 (22-161)||(41855989-41856125)
chr8 (22-102)||(19241649-19241729)
chr8 (22-102)||(19314833-19314913)
chr8 (12-144)||(10205526-10205651)
chr8 (22-157)||(15031432-15031564)
chr8 (22-157)||(41276151-41276283)
chr8 (22-161)||(42604523-42604659)
chr8 (24-161)||(45065749-45065883)
chr8 (22-157)||(24862422-24862554)
chr8 (22-161)||(41016961-41017097)
chr8 (22-81)||(22550215-22550274)
chr8 (42-145)||(27784462-27784565)
chr8 (22-161)||(24629038-24629174)
chr8 (22-158)||(40703436-40703569)
chr8 (22-133)||(31171080-31171190)
chr8 (198-265)||(40703339-40703406)
chr8 (26-84)||(44051578-44051636)
chr8 (200-265)||(18439455-18439520)
chr8 (199-266)||(26487455-26487522)
chr8 (200-265)||(24862324-24862389)
chr8 (200-265)||(41276048-41276113)
chr8 (200-265)||(44051421-44051486)
chr8 (209-265)||(42604429-42604485)
[»] chr3 (61 HSPs)
chr3 (22-162)||(44928546-44928686)
chr3 (22-162)||(51012277-51012417)
chr3 (22-162)||(11377972-11378112)
chr3 (22-162)||(34471052-34471192)
chr3 (12-162)||(27096671-27096822)
chr3 (22-161)||(50458241-50458380)
chr3 (12-162)||(50341423-50341573)
chr3 (22-162)||(20374968-20375107)
chr3 (22-265)||(27188054-27188299)
chr3 (35-162)||(51016374-51016501)
chr3 (5-162)||(30193621-30193778)
chr3 (22-162)||(49274505-49274645)
chr3 (22-161)||(45099460-45099596)
chr3 (22-161)||(34050701-34050837)
chr3 (23-161)||(3494134-3494269)
chr3 (22-162)||(10052348-10052487)
chr3 (22-144)||(14632572-14632693)
chr3 (22-161)||(2645985-2646121)
chr3 (22-161)||(46405979-46406115)
chr3 (22-161)||(54391416-54391552)
chr3 (22-160)||(13894896-13895030)
chr3 (24-162)||(46413281-46413420)
chr3 (22-161)||(55205932-55206067)
chr3 (22-161)||(41579000-41579136)
chr3 (22-161)||(49139163-49139299)
chr3 (22-161)||(55268070-55268206)
chr3 (26-158)||(2429562-2429691)
chr3 (38-144)||(17371756-17371862)
chr3 (22-161)||(2267594-2267730)
chr3 (22-161)||(43570957-43571093)
chr3 (22-161)||(46345596-46345732)
chr3 (22-161)||(7247133-7247270)
chr3 (22-161)||(4003263-4003399)
chr3 (200-265)||(20375138-20375203)
chr3 (22-157)||(51694545-51694677)
chr3 (22-84)||(34646212-34646274)
chr3 (22-84)||(49611303-49611365)
chr3 (22-158)||(52568430-52568563)
chr3 (22-161)||(36135989-36136124)
chr3 (22-84)||(43478176-43478238)
chr3 (22-84)||(49217738-49217800)
chr3 (22-157)||(34692293-34692425)
chr3 (200-265)||(7247039-7247104)
chr3 (179-232)||(27096843-27096896)
chr3 (23-82)||(3497828-3497887)
chr3 (200-265)||(13895058-13895123)
chr3 (200-265)||(24701453-24701518)
chr3 (199-260)||(49274421-49274482)
chr3 (209-265)||(49611146-49611202)
chr3 (200-263)||(45099626-45099689)
chr3 (199-265)||(30193533-30193599)
chr3 (199-265)||(44928468-44928534)
chr3 (199-265)||(51012431-51012497)
chr3 (200-265)||(2429465-2429530)
chr3 (200-265)||(41578906-41578971)
chr3 (200-265)||(43570863-43570928)
chr3 (212-265)||(51695126-51695179)
chr3 (200-265)||(55268233-55268298)
chr3 (202-266)||(10052512-10052576)
chr3 (237-265)||(44928441-44928469)
chr3 (200-264)||(49217904-49217968)
[»] scaffold0258 (1 HSPs)
scaffold0258 (23-161)||(9569-9707)
[»] chr6 (36 HSPs)
chr6 (12-162)||(30763962-30764112)
chr6 (23-263)||(14123681-14123924)
chr6 (22-162)||(20241342-20241482)
chr6 (22-162)||(22135326-22135466)
chr6 (22-162)||(22142679-22142819)
chr6 (22-161)||(12397875-12398013)
chr6 (12-160)||(33201361-33201509)
chr6 (22-144)||(17464488-17464613)
chr6 (22-144)||(11181812-11181933)
chr6 (22-161)||(27641138-27641274)
chr6 (22-157)||(21863907-21864045)
chr6 (22-161)||(6206448-6206584)
chr6 (22-161)||(11693415-11693551)
chr6 (22-161)||(13616890-13617026)
chr6 (22-161)||(32026614-32026750)
chr6 (22-161)||(32036673-32036809)
chr6 (25-162)||(32133662-32133799)
chr6 (22-161)||(32691700-32691836)
chr6 (34-141)||(14485978-14486085)
chr6 (24-161)||(35020248-35020381)
chr6 (22-161)||(13403892-13404028)
chr6 (26-161)||(20245097-20245232)
chr6 (26-161)||(22139081-22139216)
chr6 (22-161)||(34802174-34802310)
chr6 (22-84)||(29067630-29067692)
chr6 (22-84)||(29109219-29109281)
chr6 (36-116)||(19243796-19243876)
chr6 (200-265)||(13617055-13617120)
chr6 (87-144)||(14283513-14283570)
chr6 (191-264)||(20241512-20241585)
chr6 (191-264)||(22135496-22135569)
chr6 (191-264)||(22142849-22142922)
chr6 (200-265)||(29067473-29067538)
chr6 (200-265)||(29109062-29109127)
chr6 (237-265)||(12397769-12397797)
chr6 (209-265)||(13403798-13403854)
[»] chr2 (40 HSPs)
chr2 (22-162)||(6977910-6978050)
chr2 (22-158)||(15890963-15891098)
chr2 (22-162)||(33404829-33404969)
chr2 (22-162)||(5421216-5421356)
chr2 (22-162)||(34520707-34520847)
chr2 (22-157)||(17537900-17538035)
chr2 (22-161)||(19470612-19470748)
chr2 (22-136)||(16413265-16413378)
chr2 (25-161)||(43492537-43492670)
chr2 (22-161)||(28476469-28476605)
chr2 (22-161)||(35492610-35492745)
chr2 (22-156)||(24107760-24107894)
chr2 (22-161)||(16582887-16583023)
chr2 (22-161)||(43983689-43983825)
chr2 (26-145)||(20989353-20989472)
chr2 (22-158)||(22002792-22002925)
chr2 (22-161)||(2918355-2918491)
chr2 (22-161)||(3936412-3936548)
chr2 (22-161)||(17425753-17425889)
chr2 (22-161)||(41498109-41498245)
chr2 (23-144)||(28272621-28272741)
chr2 (25-102)||(37311635-37311712)
chr2 (22-161)||(39798976-39799112)
chr2 (22-161)||(23408798-23408934)
chr2 (27-145)||(18333541-18333658)
chr2 (22-161)||(40676409-40676545)
chr2 (190-264)||(33404716-33404791)
chr2 (61-145)||(12764508-12764592)
chr2 (200-265)||(16582793-16582858)
chr2 (200-265)||(40676574-40676639)
chr2 (200-265)||(43492443-43492508)
chr2 (199-266)||(17538068-17538135)
chr2 (199-266)||(24107922-24107989)
chr2 (22-64)||(3942558-3942600)
chr2 (200-265)||(23408704-23408769)
chr2 (61-110)||(44298819-44298868)
chr2 (209-265)||(2918530-2918586)
chr2 (200-260)||(5421142-5421202)
chr2 (209-265)||(19470786-19470842)
chr2 (199-259)||(37311793-37311853)
[»] scaffold0589 (1 HSPs)
scaffold0589 (23-162)||(5378-5517)
[»] scaffold0859 (2 HSPs)
scaffold0859 (22-161)||(1415-1554)
scaffold0859 (179-233)||(1340-1394)
[»] scaffold0500 (1 HSPs)
scaffold0500 (22-144)||(1604-1726)
[»] scaffold0494 (1 HSPs)
scaffold0494 (22-161)||(5833-5969)
[»] scaffold0618 (1 HSPs)
scaffold0618 (22-159)||(4550-4684)
[»] scaffold0176 (1 HSPs)
scaffold0176 (22-157)||(2862-2994)
[»] scaffold0192 (1 HSPs)
scaffold0192 (200-266)||(17111-17177)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 62)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 16531169 - 16531427
Alignment:
Q  9 attattctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaag 108  Q
    |||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||    
T  16531169 attattctaggctgaggaggagtgggaggacatgctattttgatcctcaaccaaaagcaggtgccccaaggactgtcgaggacaacccaattgagttcag 16531268  T
Q  109 tgacgaggaagataattgaatgtaatggcttgtaatgcctaattgttttggatc-nnnnnnnnnnnnnnnnatatgtcgcgcacattttgctacattttc 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||    
T  16531269 tgacgaggaagataattgaatgtaacggcttgtaatgcctaattgttttggatcttttttttatgttttttatatgtcgcgcacattttgctacattttc 16531368  T
Q  208 cttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgca 266  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  16531369 cttgacattatggtgctttgaataaaaacgtgttttgaataatttcgattaaagtcgca 16531427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 23343735 - 23343595
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||  |||| |||||||||    
T  23343735 gaggaggagcgggaggacatgctattttggtcctcaaccaaaagcaggtgccccagggattgtcgaggacaacccaattgacttgtgtgatgaggaagat 23343636  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||| |||||||  ||||||||||||||||    
T  23343635 gattgaatgtaatgggttgtaatatctaattgttttggatc 23343595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 35585894 - 35586034
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||  |||| |||||||||    
T  35585894 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtcgaggacaacccaattgacttgtgtgatgaggaagat 35585993  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||  |||||||  ||||||||||||||||    
T  35585994 gattgaatgtaatgtgttgtaatatctaattgttttggatc 35586034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 14771758 - 14771902
Alignment:
Q  17 aggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgagg 116  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| | || |||| ||||||||||| ||  |||||||||    
T  14771758 aggctgaggaggagcgggaggacatgatattttggttctcaaccaaaagcaggtgccccaaggaatatcgaggataacccaattgacttgtgtgacgagg 14771857  T
Q  117 aagataattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    ||||| |||||||||||||| |||||||  |||||||||||||||    
T  14771858 aagatgattgaatgtaatggattgtaatatctaattgttttggat 14771902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 15355776 - 15355916
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| || |||||||||||||||| ||  |||| |||||||||    
T  15355776 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtaccccagggactatcgaggacaacccaattgacttgtgtgatgaggaagat 15355875  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     || ||||||||||| |||||||  ||||||||||||||||    
T  15355876 gatcgaatgtaatgggttgtaatatctaattgttttggatc 15355916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 17685321 - 17685461
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| || ||||||||||||| ||  |||| |||||||||    
T  17685321 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccctagggactgtcgagtacaacccaattgacttgtgtgatgaggaagat 17685420  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     || ||||||||||| |||||||  ||||||||||||||||    
T  17685421 gatagaatgtaatgggttgtaatatctaattgttttggatc 17685461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 38044196 - 38044336
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||  |  |||| |||||||||    
T  38044196 gaggaggagcgggaggacatgctatttttgtcctcaaccaaaagcaggtgcctcagggactgtcgacgacaacccaattgacctgtgtgatgaggaagat 38044295  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||| |||||||  ||||||||||||||||    
T  38044296 gattgaatgtaatgggttgtaatatctaattgttttggatc 38044336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 37779364 - 37779225
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||  |||| |||||||||    
T  37779364 gaggaggagtgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtcgaggacaacccaattgacttgtgtgatgaggaagat 37779265  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     |||||||||||||   ||||||  |||||||||||||||    
T  37779264 gattgaatgtaatgaggtgtaatatctaattgttttggat 37779225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 39856235 - 39856371
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||| | || ||||||||||| ||  |||| |||||||||    
T  39856235 gaggaggagcaggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtcgaagaaaacccaattgacttgtgtgatgaggaagat 39856334  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttg 158  Q
     |||||||||||||| |||||||  ||||||||||||    
T  39856335 gattgaatgtaatgggttgtaatatctaattgttttg 39856371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 49260671 - 49260811
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||| |||||| |||||||| |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| ||  |||| |||||||||    
T  49260671 gaggatgagcggaaggacatgctattttggtcctcagccaaaagcaggtaccccagggactgtcgaggacaacccaattgacttgtgtgatgaggaagat 49260770  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||| |||||||  |||||| |||||||||    
T  49260771 gattgaatgtaatgggttgtaatatctaattattttggatc 49260811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 35186219 - 35186080
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||| ||||| ||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||| ||  || | |||||||||    
T  35186219 gaggaggagcgggagaacatgctattttggttctcagccaaaagcaagtgccccagggactgtcgaggacaacccaattgacttgtgtcatgaggaagat 35186120  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     |||||||||||||| |||||||  |||||||||||||||    
T  35186119 gattgaatgtaatgggttgtaatatctaattgttttggat 35186080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 24269342 - 24269499
Alignment:
Q  5 gtatattattctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagt 104  Q
    |||||| |||| |||  ||||||||||||||||||||| |||||||||||||  |||||||||||||||| |||||||||| |||||| | ||||||| |    
T  24269342 gtatatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcggccaaaagcaggtgccctagggactgtcgaggacagctcaattgact 24269441  T
Q  105 taagtgacgaggaagataattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    |  |||| ||||||||| |||||||||||||  |||||||  ||||||||||||||||    
T  24269442 tgtgtgatgaggaagatgattgaatgtaatgcgttgtaatatctaattgttttggatc 24269499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 19261523 - 19261628
Alignment:
Q  52 tcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataattgaatgtaatggcttgtaatgcctaat 151  Q
    ||||||||||||||||| |||||||| || ||||  ||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||    
T  19261523 tcctcaaccaaaagcagatgccccagagattgtcgtggacaacccaattgacttaggtgacgaggaagatgattgaatgtaatggcttgtaatgcctaat 19261622  T
Q  152 tgtttt 157  Q
    ||||||    
T  19261623 tgtttt 19261628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 18974529 - 18974393
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||   ||||||||| ||||| ||  ||||||||||||      
T  18974529 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtgccccagggactgtagcggacaacccgattgacttgtgtgacgaggaag-- 18974432  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | |||||||||||| || |||||||||||||||||||||    
T  18974431 -aatgaatgtaatgggttttaatgcctaattgttttggat 18974393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 26494676 - 26494540
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||   || |||||| ||||| ||   |||||||||||      
T  26494676 gaggaggagcgggaggacatgctattttggtcctcaaccaaaagaaggtgctccagggactgtagcgggcaacccgattgacttgtatgacgaggaag-- 26494579  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  26494578 -actgaatgtaatggcttttaatgcctaattgttttggat 26494540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 31451454 - 31451584
Alignment:
Q  31 cgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataattgaatg 130  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||  |||||||||||||||| ||  ||||| |||||||| ||||||||    
T  31451454 cgggtggacatgctattttggtcctcaaccaaaagcaagtgccccggggactgttgaggacaacccaattgacttgtgtgacaaggaagatgattgaatg 31451553  T
Q  131 taatggcttgtaatgcctaattgttttggat 161  Q
    ||||   |||||||  |||||||||||||||    
T  31451554 taataagttgtaatatctaattgttttggat 31451584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 42570779 - 42570915
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||| ||||||||||  ||| |||||| ||||| ||  ||||||||||||      
T  42570779 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgcctcagggactgtagagggcaacccgattgacttgtgtgacgaggaag-- 42570876  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||||||||| ||||||||    
T  42570877 -aatgaatgtaatgacttttaatgcctaattattttggat 42570915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 29437151 - 29437019
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||   || |||||| ||||| ||  ||||||| ||||      
T  29437151 gaggaggagcgggaggacatgttattttggtcctcaaccaaaacaaggtg-cccagggactgtagcgggcaacccgattgacttgtgtgacgaagaag-- 29437055  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttg 158  Q
     | ||||||||||||||| ||||||||||||||||||    
T  29437054 -aatgaatgtaatggcttttaatgcctaattgttttg 29437019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 24363055 - 24363191
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||| |||||| |||||||||||   || |||||  ||||| ||  ||||||||||||      
T  24363055 gaggaggagtgggaggatatgctattttggtcctcaaccaaaagaaggtgctccagggactgtagtgggcaacctgattgacttgtgtgacgaggaag-- 24363152  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  24363153 -aatgaatgtaatggcttctaatgcctaattgttttggat 24363191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 35525185 - 35525320
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||| |||   || ||| || ||||| ||  ||||||||||||      
T  35525185 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggaatgtagcgggcaa-ccgattgacttgtgtgacgaggaag-- 35525281  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  35525282 -aatgaatgtaatggcttttaatgcctaattgttttggat 35525320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 13284675 - 13284538
Alignment:
Q  25 gaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataat 124  Q
    |||||||| ||||||||| |||||||||||||||  ||||||| |||||| |||||||||   || |||||| ||||| ||  |||| ||||||||| |     
T  13284675 gaggagcgagaggacatgctattttggtcctcaatgaaaagcaagtgcccaagggactgtagcgggcaacccgattgatttgtgtgatgaggaagatgaa 13284576  T
Q  125 tgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    |||||||||||| || |||||||||| |||||||||||    
T  13284575 tgaatgtaatggtttctaatgcctaaatgttttggatc 13284538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 13634407 - 13634543
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||| |||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  13634407 gaggagtagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 13634504  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  13634505 -aatgaatgtaatggcttttaatgcctaattgttttggat 13634543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 41803444 - 41803312
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||| |||| |||||||   || |||||| ||||| ||  ||||| ||||||      
T  41803444 gaggaggagcgggaggacatgttattttggtcctcaaccaaaacaaggtgtcccaaggactgtagcgggcaacccgattgacttgtgtgacaaggaag-- 41803347  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgtttt 157  Q
     | ||||||||||||||| ||| |||||||||||||    
T  41803346 -aatgaatgtaatggcttttaaggcctaattgtttt 41803312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 12790265 - 12790341
Alignment:
Q  25 gaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattg 101  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||    
T  12790265 gaggagtgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtcgaggacaacccgattg 12790341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 46142443 - 46142578
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||| ||||||||   || |||||| ||||| ||  |||| |||||||      
T  46142443 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgcccctgggactgtagcgggcaacccgattgacttgtgtgatgaggaag-- 46142540  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||| | || ||||||||||||||||||    
T  46142541 -aatgaatgtaatggcct-tattgcctaattgttttggat 46142578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 48227729 - 48227593
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||| ||||||||| |||||||||||||||||||||  |||| || ||||||||||   || |||||| ||||| ||  ||||||||||||      
T  48227729 gaggaggagcgagaggacatgctattttggtcctcaaccaaaacaaggtaccgcagggactgtagcgggcaacccgattgatttgtgtgacgaggaag-- 48227632  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| ||| |||||||| ||||||||    
T  48227631 -aatgaatgtaatggcttttaaagcctaattattttggat 48227593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 49428557 - 49428421
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   || ||||||  |||| ||  ||||||||||||      
T  49428557 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagtgggcaacccggttgatttgtgtgacgaggaag-- 49428460  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||| ||||||||| |||||||||||||||||||||    
T  49428459 -aatgaatataatggcttttaatgcctaattgttttggat 49428421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 6436938 - 6436795
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgac----gagga 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||| |||   || |||||| ||||| ||  |||||    || ||    
T  6436938 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacatggtgccccagggattgtagcgggcaacccgattgacttgtgtgacgactgacga 6436839  T
Q  118 agataattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     ||  | ||||||||||||||| |||||||||||||||||||||    
T  6436838 ggaagaatgaatgtaatggcttttaatgcctaattgttttggat 6436795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 13974144 - 13974008
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||  |||||||||| ||||||| |||||||||||||  ||||||||||||||||||   || |||||| ||| | ||  ||||||||||||      
T  13974144 gaggaggagatggaggacatgctattttgttcctcaaccaaaacaaggtgccccagggactgtagcgggcaacccgattaacttgtgtgacgaggaag-- 13974047  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | |||||||||||| || ||||| |||||||||||||||    
T  13974046 -aatgaatgtaatggtttttaatgtctaattgttttggat 13974008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 49925440 - 49925564
Alignment:
Q  25 gaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataat 124  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||  |||||||||   || |||||| ||||| ||  ||||||||||||   |     
T  49925440 gaggagcgggaggacatgttatttcggtcctcaaccaaaacaaggtgccttagggactgtagcgggcaacccgattgacttgtgtgacgaggaag---aa 49925536  T
Q  125 tgaatgtaatggcttgtaatgcctaatt 152  Q
    |||||||||||| || ||||||||||||    
T  49925537 tgaatgtaatggtttttaatgcctaatt 49925564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 40532369 - 40532441
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaac 94  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||| ||| ||||||||    
T  40532369 gaggaggagcgggaggacatgctatttttgtcctcagccaaaagcaggtgcctcagggaccgtcgaggacaac 40532441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 14172748 - 14172802
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgcccca 76  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  14172748 gaggaggagcgggaggacatgctattttggtcctcaaccaaaagaaggtgcccca 14172802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 29761168 - 29761230
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||| ||||||||||    
T  29761168 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcagggactgt 29761230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 36911094 - 36911036
Alignment:
Q  26 aggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||    
T  36911094 aggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgt 36911036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 51271021 - 51270959
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||| ||||||||||    
T  51271021 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcagggactgt 51270959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 27485711 - 27485842
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||| |||||||||| |||||||||||||||||||||  ||||||| |||| |||||   ||| ||||| ||||| ||  |||||||||| ||     
T  27485711 gaggaggagcaggaggacatgctattttggtcctcaaccaaaacaaggtgccgcagg-actgtagcggaaaacccgattgacttgtgtgacgaggatgaa 27485809  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgtttt 157  Q
       |||||||||||||||  ||||||||||||||||    
T  27485810 ---tgaatgtaatggctttaaatgcctaattgtttt 27485842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 49397864 - 49397728
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||| ||||||||||||||  |||||||||| || |||||||   ||||||||| |||||||   || |||||| ||||| ||  ||||||| |||||     
T  49397864 gaggatgagcgggaggacatactattttggtcatcgaccaaaacacggtgccccaaggactgtagcgggcaacccgattgacttgtgtgacgatgaagaa 49397765  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
       ||||||||||||||| |||||||||||||||||||||    
T  49397764 ---tgaatgtaatggcttttaatgcctaattgttttggat 49397728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 26634196 - 26634249
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgcccc 75  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||||||||    
T  26634196 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgcccc 26634249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 17373568 - 17373490
Alignment:
Q  179 atatgtcgcgcacattttgctacattttccttgacattatggtgctttgaataaaaat-gcgttttgaataatttcgattaaagtcgc 265  Q
    ||||||||||| |||||||||||||||||||         |||||||||||||||||| | ||||||| |||||||||||||||||||    
T  17373568 atatgtcgcgcgcattttgctacattttcct---------ggtgctttgaataaaaatcgtgttttgactaatttcgattaaagtcgc 17373490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 44336913 - 44336968
Alignment:
Q  29 agcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    |||||||||||||| ||||||||||||||||||||   ||||||| ||||||||||    
T  44336913 agcgggaggacatgctattttggtcctcaaccaaatcaaggtgccgcagggactgt 44336968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 27485875 - 27485940
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  27485875 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 27485940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 29761322 - 29761387
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  29761322 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 29761387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 41803277 - 41803212
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||||||| ||||||||  || |||  |||||||||||||||||||||    
T  41803277 acattttgtttgacattatggtgcttagaataaaatcgcatttaaaataatttcgattaaagtcgc 41803212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 51270866 - 51270801
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  51270866 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 51270801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 22528521 - 22528466
Alignment:
Q  209 ttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcg 264  Q
    ||||||||||||| ||| |||||||| ||| ||| ||||||||| |||||||||||    
T  22528521 ttgacattatggtacttagaataaaattgcatttggaataattttgattaaagtcg 22528466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 26494511 - 26494452
Alignment:
Q  201 cattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaa 260  Q
    |||||| |||||||||||||| ||| ||||||||  || ||| |||||||||||||||||    
T  26494511 cattttgcttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaa 26494452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 35586047 - 35586114
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgca 266  Q
    |||||||| ||||||||  || | |||||||||||  |||||||||||||||||| |||||| |||||    
T  35586047 tacattttgcttgacatattgatactttgaataaatttgcgttttgaataatttcaattaaaatcgca 35586114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 46142607 - 46142670
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtc 263  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||    
T  46142607 acattttgtttgacattatggtacttagaataaaaccgcatttggaataatttcgattaaagtc 46142670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 13284497 - 13284443
Alignment:
Q  211 gacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||| || ||||||||||||   ||||||||||||||| ||||||||||||    
T  13284497 gacattatagtactttgaataaaaccccgttttgaataattttgattaaagtcgc 13284443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 38044348 - 38044414
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||| ||||||||  |||| |||||||||||  |||||||| ||||||||| |||||| ||||    
T  38044348 tacattttgcttgacatattggtactttgaataaatttgcgttttaaataatttcaattaaaatcgc 38044414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 39856387 - 39856453
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||| ||||||||  |||| |||||||||||  |||||||| ||||||||| |||||| ||||    
T  39856387 tacattttgcttgacatattggtactttgaataaatttgcgttttaaataatttcaattaaaatcgc 39856453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 14172919 - 14172972
Alignment:
Q  209 ttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagt 262  Q
    ||||||||||||| ||| ||||||||  || ||| |||||||||||||||||||    
T  14172919 ttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagt 14172972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 31451621 - 31451690
Alignment:
Q  191 cattttgctacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaa 260  Q
    ||||||| || |||||  || |||||||||| |||||||||||   |||| |||||||||||||||||||    
T  31451621 cattttggtaaattttggtttacattatggtactttgaataaagtcgcgtattgaataatttcgattaaa 31451690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 36910922 - 36910869
Alignment:
Q  212 acattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  36910922 acattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 36910869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 42570944 - 42571009
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||| ||||||||||||||    
T  42570944 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatatcgattaaagtcgc 42571009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 48227564 - 48227499
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||| ||||||||||||    
T  48227564 acattttgtttgacattatggtacttagaataaaatcgcatttggaataattttgattaaagtcgc 48227499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 49260834 - 49260895
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaa 260  Q
    |||||||| ||||||||  |||| |||||||||||   ||||||||||||||||| ||||||    
T  49260834 tacattttgcttgacatattggtactttgaataaattcgcgttttgaataatttcaattaaa 49260895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 49428392 - 49428327
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||| ||||||||||||    
T  49428392 acattttgtttgacattatggtacttagaataaaatcgcatttggaataattttgattaaagtcgc 49428327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 12790472 - 12790500
Alignment:
Q  237 gcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||||||||||||||||||||||||    
T  12790472 gcgttttgaataatttcgattaaagtcgc 12790500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 14771984 - 14772024
Alignment:
Q  224 tttgaataaaaatgcgttttgaataatttcgattaaagtcg 264  Q
    ||||||||||  ||||| |||||||||||||||||||||||    
T  14771984 tttgaataaagttgcgtattgaataatttcgattaaagtcg 14772024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 15355938 - 15356002
Alignment:
Q  196 tgctacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaa 260  Q
    ||||||||||| ||||||||   ||| |||||||||||   ||||||||||||||||| ||||||    
T  15355938 tgctacattttgcttgacatataggtactttgaataaattcgcgttttgaataatttcaattaaa 15356002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 24363225 - 24363277
Alignment:
Q  201 cattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttc 253  Q
    |||||| || ||||||||||| |||||||| |||  |||||||||||||||||    
T  24363225 cattttgctggacattatggtactttgaatgaaatcgcgttttgaataatttc 24363277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 22 - 262
Target Start/End: Original strand, 1641673 - 1641913
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||||| ||| |||| ||  ||||||||||||||    
T  1641673 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagaaggtgccccaggaactggcgaggacaatccagttgacttgtgtgacgaggaagat 1641772  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatcnnnnnnnnnnnnnnnnatatgtcgcgcacattttgctacattttccttgacattatggt 221  Q
     |||||||||||||| |||||||||||||||||||||||||                ||||||||||| |||| ||||||||||| || || ||||||||    
T  1641773 gattgaatgtaatggattgtaatgcctaattgttttggatctttttttatgttttttatatgtcgcgcgcattgtgctacattttgctagatattatggt 1641872  T
Q  222 gctttgaataaaaatgcgttttgaataatttcgattaaagt 262  Q
     ||||||||||||   |||||||||||||||||||||||||    
T  1641873 actttgaataaaatcacgttttgaataatttcgattaaagt 1641913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 4230701 - 4230447
Alignment:
Q  12 attctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtga 111  Q
    |||| ||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||  ||||    
T  4230701 attccaggtggaggaggagcgggaggacatgctattttgatcctcaaccaaaagcaggtgccccagggactgtcgaggacaacccaattgacttgtgtga 4230602  T
Q  112 cgaggaagataattgaatgtaatggcttgtaatgcctaattgttttggatc-nnnnnnnnnnnnnnnnatatgtcgcgcacattttgctacattttcctt 210  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||||||||                 |||||||| || ||||||| |||||||| |||    
T  4230601 cgaggaagatgattgattgtaatggcttgtaatgtctaattgttttggatctttttttatgtttttttatatgtcgtgcgcattttggtacattttgctt 4230502  T
Q  211 gacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    ||||||||||| |||||||||||   |||| |||| |||||||||||||| ||||    
T  4230501 gacattatggtactttgaataaagtcgcgtattgagtaatttcgattaaaatcgc 4230447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 43350383 - 43350523
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||| |||||||||    
T  43350383 gaggaggagcgggaggacatgctattttggtcttcaaccaaaagcaggtgccccagggactgtcgaggacaacccaattgacttgtgtgatgaggaagat 43350482  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||  |||||||  ||||||||||||||||    
T  43350483 gattgaatgtaatgagttgtaatatctaattgttttggatc 43350523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 22292064 - 22291924
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| ||||||||| |||||| ||  |||| |||||||||    
T  22292064 gaggaggagcgggaggacatgctattttggtcctgagccaaaagcaggtgccccagggactgtcgaggacaacctaattgacttgtgtgatgaggaagat 22291965  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||| |||||||  ||||||||||||||||    
T  22291964 gattgaatgtaatgggttgtaatatctaattgttttggatc 22291924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 42736208 - 42736069
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||  |||| |||||||||    
T  42736208 gaggaggagcgggagaacatgctattttggtcctcagccaaaagcaggtgccc-agggactgtcgaggacaacccaattgacttgtgtgatgaggaagat 42736110  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||  || ||||  ||||||||||||||||    
T  42736109 gattgaatgtaatgagttataatatctaattgttttggatc 42736069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 42683621 - 42683485
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||   || |||||| ||||| ||  |||| |||||||      
T  42683621 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgtagcgggcaacccgattgacttgtgtgatgaggaag-- 42683524  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  42683523 -aatgaatgtaatggcttttaatgcctaattgttttggat 42683485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 20877016 - 20877095
Alignment:
Q  23 aggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattga 102  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  20877016 aggaggagcgggaggacatgctattttggtcctcaaccaaaagcaggtgccccagggactgtcgaggacaacccgattga 20877095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 48271869 - 48271733
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||| |||||| |||||||||||||||||||||  ||||||||||||||||||   || |||||| ||||| ||  ||||||||||||      
T  48271869 gaggaggagcgggatgacatgctattttggtcctcaaccaaaacaaggtgccccagggactgtagcgggcaacccgattgacttgtgtgacgaggaag-- 48271772  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| ||||||||| |||||||||||    
T  48271771 -aatgaatgtaatggcttttaatgcctagttgttttggat 48271733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 17184417 - 17184278
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||| ||| |||| | |||||||||||||||||| ||| |||| |||||||||||||||| ||  |||| | |||||||    
T  17184417 gaggaggagcgggaggacatgctatattg-tccttagccaaaagcaggtgccccatggattgtcgaggacaacccaattgacttgtgtgatgcggaagat 17184319  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||  |||||||  ||||||||||||||||    
T  17184318 gattgaatgtaatgtgttgtaatatctaattgttttggatc 17184278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 36392812 - 36392948
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||   || |||||| ||||| ||  ||||||||||||      
T  36392812 gaggaggagcgggaggacatgttattttggtcctcaaccaaaacaaggtgcctcagggactgtagcgggcaacccgattgacttgtgtgacgaggaag-- 36392909  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    |||| ||||||||  ||| |||||||||||||||||||||    
T  36392910 aatt-aatgtaatttcttttaatgcctaattgttttggat 36392948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 27316952 - 27317070
Alignment:
Q  27 ggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataattg 126  Q
    ||||||| || || |||||||||||||  ||||||||||||||||||| ||| |||||| |||||||||||||||| ||||| || |||| |||| ||||    
T  27316952 ggagcggaagaacttgttattttggtctacaaccaaaagcaggtgccctaggaactgtctaggacaacccaattgacttaagcgatgagggagatgattg 27317051  T
Q  127 aatgtaatggcttgtaatg 145  Q
    |||||||||| ||||||||    
T  27317052 aatgtaatggtttgtaatg 27317070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 9366228 - 9366364
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  9366228 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 9366325  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  9366326 -aatgaatgtaatggcttttaatgcctaattgttttggat 9366364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 15900392 - 15900530
Alignment:
Q  17 aggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgagg 116  Q
    |||| ||||||||| ||||||| ||| ||||||||||||||  |||||||||||||||||||||||||| |||||||||| ||| |  |  |||||||||    
T  15900392 aggctgaggaggagtgggaggatatgctattttggtcctcagtcaaaagcaggtgccccagggactgtcgaggacaacccgattaacctgtgtgacgagg 15900491  T
Q  117 aagataattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    |||||      ||||| ||||||||||||||||||||| ||||||    
T  15900492 aagat------atgtagtggcttgtaatgcctaattgtgttggat 15900530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 17840417 - 17840281
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   || |||||| ||||| ||  ||||||||||||      
T  17840417 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcgggcaacccgattgatttgtgtgacgaggaag-- 17840320  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  17840319 -aatgaatgtaatggcttttaatgcctaattgttttggat 17840281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 20565857 - 20565721
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| ||||| || ||  ||||||||||||      
T  20565857 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccaatcgatttgtgtgacgaggaag-- 20565760  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  20565759 -aatgaatgtaatggcttttaatgcctaattgttttggat 20565721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 41623299 - 41623163
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||| |||||||| |||||||||||||| ||||||  ||||||||||||||||||   || |||||| ||||| ||  |||| |||||||      
T  41623299 gaggaggagcggaaggacatgctattttggtcctcatccaaaacaaggtgccccagggactgtagcgggcaacccgattgacttgtgtgatgaggaag-- 41623202  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  41623201 -aatgaatgtaatggcttttaatgcctaattgttttggat 41623163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 42504366 - 42504502
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| |||| || ||||||||||   |||||| |||||||| ||  ||||||||||||      
T  42504366 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaagaaggtaccgcagggactgtagcggacaagccaattgatttgtgtgacgaggaag-- 42504463  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | |||  |||||||||| |||||||||||||||||||||    
T  42504464 -aatgacagtaatggcttttaatgcctaattgttttggat 42504502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 46861186 - 46861322
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||  ||||||||||||||||||   || |||||| ||||| ||   |||||||||||      
T  46861186 gaggaggagtgggaggaaatgctattttggtcctcaaccaaaacaaggtgccccagggactgtagcgggcaacccgattgacttgtatgacgaggaag-- 46861283  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  46861284 -aatgaatgtaatggcttttaatgcctaattgttttggat 46861322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 21186285 - 21186418
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||   || |||| | ||||| ||  ||||||||||||      
T  21186285 gaggaggagcgggaggacatgttattttggtcctcaaccaaaacaaggtgccctagggactgtagcgggcaactcgattgacttgtgtgacgaggaag-- 21186382  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttg 158  Q
     | ||||||||||| | | ||||||||||||||||||    
T  21186383 -aatgaatgtaatgacatttaatgcctaattgttttg 21186418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 34157895 - 34157762
Alignment:
Q  25 gaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataat 124  Q
    |||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   || |||||| ||||| ||  ||||||||||||   |     
T  34157895 gaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccacagggactgtagcgggcaacccgattgatttgtgtgacgaggaag---aa 34157799  T
Q  125 tgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34157798 tgaatgtaatggcttttaatgcctaattgttttggat 34157762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 3380050 - 3380123
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacc 95  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| || ||||||    
T  3380050 gaggaggagcgggaggacatgctattttggtcctcaaccaaaagcaggtgccacaaggactgtcgagcacaacc 3380123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 28113397 - 28113459
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  28113397 gaggaggagcgggaggacatgttattttggtcctcaaccaaaacaaggtgccacagggactgt 28113459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 28978224 - 28978360
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||| ||| ||||||||||   || |||||| ||||| ||  ||||||||||||      
T  28978224 gaggaggagcgggaggacatgttattttggtcctcaacaaaaacaaggcgccacagggactgtagcgggcaacccgattgacttgtgtgacgaggaag-- 28978321  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||| | ||| ||||| || ||||||||||||    
T  28978322 -aatgaatgtaaagacttttaatgtctgattgttttggat 28978360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 34142069 - 34141937
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||| |||||| |||||||||||||||||||||  ||||||| ||||||||||   ||  ||||| ||||| ||  |||||||||| |      
T  34142069 gaggaggagcgggatgacatgctattttggtcctcaaccaaaacaaggtgccacagggactgtagcgggaaacccgattgacttgtgtgacgaggagg-- 34141972  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgtttt 157  Q
     | ||||||||||| ||| |||||||||||||||||    
T  34141971 -aatgaatgtaatgacttttaatgcctaattgtttt 34141937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 16886001 - 16886101
Alignment:
Q  35 aggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataattgaatgtaat 134  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||| ||| || |||||||||||||||| ||| |||| || | |||| ||| ||||||||    
T  16886001 aggacttgttattttggtcctcaaccaaaagtaggtgccacaggaactctcgaggacaacccaattgacttatgtgatgaaggagatgattaaatgtaat 16886100  T
Q  135 g 135  Q
    |    
T  16886101 g 16886101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 45362284 - 45362346
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||| || |||||||    
T  45362284 gaggaggagcgggaggacatgctattttggtcctcaaccaaaagaaggtgccgcaaggactgt 45362346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 48194183 - 48194123
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggact 82  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||| ||||||||    
T  48194183 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcagggact 48194123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 41934468 - 41934565
Alignment:
Q  41 tgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataattgaatgtaatggctt 139  Q
    |||||||| | ||| || |||||||||||||||| ||| |||||| |||||||||||||||| |||||| |||||| | || ||| |||||||||||||    
T  41934468 tgttatttcgatccgcagccaaaagcaggtgccc-aggaactgtcgaggacaacccaattgacttaagtaacgagggaaatgattaaatgtaatggctt 41934565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 40589955 - 40589896
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggac 81  Q
    ||||||||||||||||||||| |||||||||| ||||||||||  ||||||| |||||||    
T  40589955 gaggaggagcgggaggacatgctattttggtcatcaaccaaaacaaggtgccgcagggac 40589896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 10225288 - 10225152
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||| ||| ||| ||||||||| |||||||||||  ||||||| ||| || |||   || |||||| ||||| ||  ||||||||||||      
T  10225288 gaggaggagcggggggaaatgctattttggttctcaaccaaaacaaggtgcctcagagattgtagcggccaacccgattgacttgtgtgacgaggaag-- 10225191  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||| ||||||||| ||||| |||||| ||||||||    
T  10225190 -aatgaatataatggcttttaatgtctaattattttggat 10225152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 15900588 - 15900633
Alignment:
Q  218 tggtgctttgaataaaaat-gcgttttgaataatttcgattaaagt 262  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||    
T  15900588 tggtgctttgaataaaaatcgtgttttgaataatttcgattaaagt 15900633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 46861350 - 46861412
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagt 262  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| |||||||||||||||||||    
T  46861350 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagt 46861412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 41623122 - 41623069
Alignment:
Q  212 acattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  41623122 acattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 41623069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 42683456 - 42683391
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||| | ||| ||||||||  || ||| ||||||||||||||||||||||    
T  42683456 acattttgtttgacattatgttacttagaataaaatcgcatttggaataatttcgattaaagtcgc 42683391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 48194029 - 48193964
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||| ||||||||    
T  48194029 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgatcaaagtcgc 48193964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 48271704 - 48271639
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || |||  |||||||||||||||||||||    
T  48271704 acattttgtttgacattatggtacttagaataaaatcgcatttgaaataatttcgattaaagtcgc 48271639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 17184201 - 17184173
Alignment:
Q  237 gcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||||||||||||||||||||||||    
T  17184201 gcgttttgaataatttcgattaaagtcgc 17184173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 28113592 - 28113620
Alignment:
Q  237 gcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||||||||||||||||||||||||    
T  28113592 gcgttttgaataatttcgattaaagtcgc 28113620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 21410968 - 21411215
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| ||  ||||||||||||||    
T  21410968 gaggagaagcgggaggacatgctattttggtcctcaaccaaaagcaggtgccacagggactggcgaggacaacccaattgacttgtgtgacgaggaagat 21411067  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc-----nnnnnnnnnnnnnnnnatatgtcgcgcacattttgctacattttccttgacatt 216  Q
     ||||||||||||||||||| ||||||||||||||||||||                     ||||||||||| |||||||||||||||| |||||||||    
T  21411068 gattgaatgtaatggcttgtgatgcctaattgttttggatcttttttttttatgttttttttatatgtcgcgcgcattttgctacattttgcttgacatt 21411167  T
Q  217 atggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcg 264  Q
    ||||| |||| |||||||  |||||||||||||||| |||||||||||    
T  21411168 atggtactttaaataaaatcgcgttttgaataattttgattaaagtcg 21411215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 25145755 - 25145611
Alignment:
Q  17 aggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgagg 116  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||||||    
T  25145755 aggctgaggaggagcggaaggacatgttatttcggtcctcaaccaaaagcaggtgcgccagggactgtcgaggacaacccaattgacttatgtgacgagg 25145656  T
Q  117 aagataattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||    
T  25145655 aagatgattgaatgtaatggcttgtaatgtctaattgttttggat 25145611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 264
Target Start/End: Complemental strand, 21412478 - 21412230
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||| | |||||||||||||||| ||  ||||||||||||||    
T  21412478 gaggagaagcgggaggacatgctattttggtcctcaaccaaaagcaggtgcctctgggactggcgaggacaacccaattgacttgtgtgacgaggaagat 21412379  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc------nnnnnnnnnnnnnnnnatatgtcgcgcacattttgctacattttccttgacat 215  Q
     ||||||||||||||||||| ||||||||||||||||||||                      ||||||||||| |||||||||||||||| ||||||||    
T  21412378 gattgaatgtaatggcttgtgatgcctaattgttttggatcttttttttttttttttttttttatatgtcgcgcgcattttgctacattttgcttgacat 21412279  T
Q  216 tatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcg 264  Q
    |||||| |||| |||||||  |||||||||||||||| |||||||||||    
T  21412278 tatggtactttaaataaaatcgcgttttgaataattttgattaaagtcg 21412230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 51026780 - 51026920
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||||||    
T  51026780 gaggaggagcgggatgacatgctattttggtcctcagccaaaagcaggtgccccagggactgtcaaggacaacccaattgacttgtgtgatgaggaagat 51026879  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||| |||||||  ||||||||||||||||    
T  51026880 gattgaatgtaatgggttgtaatatctaattgttttggatc 51026920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 9718479 - 9718230
Alignment:
Q  17 aggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgagg 116  Q
    |||| ||||||||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||| ||  ||||||||     
T  9718479 aggctgaggaggagtgggaggacatgctattttggtcctcagccaaa-gcaggtgctccagggactgtcgaggacaacccaattgacttgtgtgacgaga 9718381  T
Q  117 aagataattgaatgtaatggcttgtaatgcctaattgttttggatc--nnnnnnnnnnnnnnnnatatgtcgcgcacattttgctacattttccttgaca 214  Q
    ||||| |||||||||||||| |||| ||||||||||||||| ||||                  ||||| || || ||||||||||||||||  ||||||    
T  9718380 aagatgattgaatgtaatggtttgtcatgcctaattgtttttgatctttttttatgtttttcttatatgccgtgcgcattttgctacattttgtttgaca 9718281  T
Q  215 ttatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    ||||||| |||| |||||||  |||||||||||||||||||||||||||||    
T  9718280 ttatggtacttttaataaaatcgcgttttgaataatttcgattaaagtcgc 9718230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 4910615 - 4910765
Alignment:
Q  12 attctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtga 111  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||  ||||    
T  4910615 attctaggctgaggaagagcgggaggacatgctattttggtcctcatccaaaagcaggtgccctagggactgtcgaggacaacccaattgacttgtgtga 4910714  T
Q  112 cgaggaagataattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    |||||||||| ||||||||||||   |||||||  ||||||||||||||||    
T  4910715 cgaggaagatgattgaatgtaatacgttgtaatatctaattgttttggatc 4910765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 2774250 - 2774098
Alignment:
Q  9 attattctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaag 108  Q
    ||||||| |||  ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| ||  |    
T  2774250 attattcgaggttgaggaggagcgggaggacatgctattttggtcttcaaccaaaagcaggtgcccc-gggactgtcgaggacaacccaattgacttgtg 2774152  T
Q  109 tgacgaggaagataattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    ||| ||||||||| |||||||||||||| |||||||  ||||||||||||||||    
T  2774151 tgatgaggaagatgattgaatgtaatgggttgtaatatctaattgttttggatc 2774098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 36775461 - 36775614
Alignment:
Q  9 attattctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaag 108  Q
    ||||||| |||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||  |    
T  36775461 attattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggaccgtcgaggacaacccaattgacttgtg 36775560  T
Q  109 tgacgaggaagataattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    ||| ||||||||| |||||||||||||  |||||||  ||||||||||||||||    
T  36775561 tgatgaggaagatgattgaatgtaatgagttgtaatatctaattgttttggatc 36775614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 24076343 - 24076204
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||| || |||||||||||||||  ||  ||||||||||||||    
T  24076343 gaggaggagcggaaggacttgttatttcggtcctcaaccaaaagcaggtgccccaggcactctcgaggacaacccaattgtcttgtgtgacgaggaagat 24076244  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     ||||||||||||| ||||||||| |||||||||||||||    
T  24076243 gattgaatgtaatgacttgtaatgtctaattgttttggat 24076204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 21170697 - 21170557
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||  |||| |||||||||    
T  21170697 gaggaggagcggaaggacatgctattttggtcctcagccaaaagcaggtgcccccgggactgtcgaggacaacccaattgacttgtgtgatgaggaagat 21170598  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||  |||||||  ||||||||||||||||    
T  21170597 gattgaatgtaatgagttgtaatatctaattgttttggatc 21170557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 49790921 - 49791057
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||  |||| |||||||||    
T  49790921 gaggaggagcgggaggacatgatattttggtcctcagccaaaagcaggtgccccagggactgtcgagaacaacccaattgacttgtgtgatgaggaagat 49791020  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttg 158  Q
     ||| |||||||||| |||||||  ||||||||||||    
T  49791021 gattaaatgtaatgggttgtaatatctaattgttttg 49791057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 45940759 - 45940619
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||||||||| || ||||||| |||||||| ||||||| ||  |||| || ||||||    
T  45940759 gaggaggagcgggaggacatgctatttgggtcctcagccaaaagcaggtgccctagagactgtcgaggacaactcaattgacttgtgtgatgacgaagat 45940660  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||| |||||||  ||||||| ||||||||    
T  45940659 gattgaatgtaatgggttgtaatatctaattggtttggatc 45940619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 17292895 - 17292760
Alignment:
Q  12 attctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtga 111  Q
    |||| |||| |||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  ||||||| ||||||||||||||||| |||| ||    
T  17292895 attcaaggctgaggaggagcaggaggacatgctattttggtcctcaacaaaaagcaggtgccccaaagactgtcgaggacaacccaattgagataagcga 17292796  T
Q  112 cgaggaagataatt---gaatgtaatggcttgtaat 144  Q
    ||||| |||| |||    ||||||||||||||||||    
T  17292795 cgagggagatgattaaataatgtaatggcttgtaat 17292760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 34152275 - 34152411
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||||   || ||||||  |||| ||  ||||||||||||      
T  34152275 gaggaggagcgggaggacatgctattttggtcctcaaccaaatcaaggtgccccagggactgtagcgggcaacccggttgacttgtgtgacgaggaag-- 34152372  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  34152373 -aatgaatgtaatggcttttaatgcctaattgttttggat 34152411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 41793913 - 41794049
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||| || ||||||||||   |||||| ||||| || ||  ||||||||||||      
T  41793913 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccaatcgatttgtgtgacgaggaag-- 41794010  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  41794011 -aatgaatgtaatggcttttaatgcctaattgttttggat 41794049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 37867668 - 37867536
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||   || | |||||||||| ||  ||||||||||  ||    
T  37867668 gaggaggagcgggaggacatgttattttggtcctcaacaaaaacaaggtgccccagggactgtagcgggcgacccaattgacttgtgtgacgagga--at 37867571  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgtttt 157  Q
    || ||||||||||||||| |||||| ||||||||||    
T  37867570 aa-tgaatgtaatggcttttaatgcttaattgtttt 37867536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 6176426 - 6176562
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  6176426 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 6176523  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  6176524 -aatgaatgtaatggcttttaatgcctaattgttttggat 6176562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 10315540 - 10315455
Alignment:
Q  179 atatgtcgcgcacattttgctacattttccttgacattatggtgctttgaataaaaa-tgcgttttgaataatttcgattaaagtc 263  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||    
T  10315540 atatgtcgcgcgcattttgctacattttccttgacattatggtgttttaaataaaaattgtgttttgaataatttcgattaaagtc 10315455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 21016288 - 21016424
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  21016288 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 21016385  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  21016386 -aatgaatgtaatggcttttaatgcctaattgttttggat 21016424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 49095841 - 49095705
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  49095841 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 49095744  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  49095743 -aatgaatgtaatggcttttaatgcctaattgttttggat 49095705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 55797839 - 55797703
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || || |||||||   |||||| |||||||| ||  ||||||||||||      
T  55797839 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcatggactgtagcggacaagccaattgatttgtgtgacgaggaag-- 55797742  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  55797741 -aatgaatgtaatggcttttaatgcctaattgttttggat 55797703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 43888482 - 43888562
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattga 102  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||    
T  43888482 gaggaggagcgggaggacatgctattttggccctcagccaaaagcaggtgccccagggactgtcaaggacaatccgattga 43888562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 40352887 - 40353023
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||| ||||||   |||||| || ||||| ||  ||||||||||||      
T  40352887 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagcgactgtagcggacaagccgattgatttgtgtgacgaggaag-- 40352984  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  40352985 -aatgaatgtaatggcttttaatgcctaattgttttggat 40353023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 56140111 - 56139979
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||   || |||||| ||||| ||  ||||||||   |||    
T  56140111 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgtagcgggcaacccgattgacttgtgtgacgag---gat 56140015  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgtttt 157  Q
     | |||||||| ||| || |||||||||||||||||    
T  56140014 gaatgaatgtagtggtttttaatgcctaattgtttt 56139979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 49816405 - 49816485
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattga 102  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||    
T  49816405 gaggaggagctggaggacatgctattttggtcctcagccaaaagcaggtgccctagggactgtcgaggacaacccgattga 49816485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 956443 - 956579
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||    | |||| |  |||  ||  ||||||||||||      
T  956443 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgtagcaggcaactcgtttggcttgtgtgacgaggaag-- 956540  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||||||||||||||||||    
T  956541 -aatgaatgtaatgacttttaatgcctaattgttttggat 956579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 44559316 - 44559452
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||   ||||||||||| ||||||   || ||||||  |||| ||  ||||||||| ||      
T  44559316 gaggaggagcgggaggacatgctattttggtcctcaaccaaatcaaggtgccccagagactgtagcgggcaacccgtttgacttgtgtgacgaggcag-- 44559413  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||||||||||||||||||    
T  44559414 -aatgaatgtaatgacttttaatgcctaattgttttggat 44559452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 51427190 - 51427324
Alignment:
Q  22 gaggaggagcgggaggacatgttatttt-ggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaaga 120  Q
    ||||||||||||||||||||| |||||| |||||||||||||||  ||| |||||||||||| |   || |||||| ||||| ||  |||||||||||||    
T  51427190 gaggaggagcgggaggacatgctatttttggtcctcaaccaaaacaaggcgccccagggactatagcgggcaacccgattgacttgtgtgacgaggaaga 51427289  T
Q  121 taattgaatgtaatggcttgtaatgcctaattgttttg 158  Q
        ||||||||||||||| |||| |||||||||||||    
T  51427290 a---tgaatgtaatggcttttaattcctaattgttttg 51427324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 42887497 - 42887443
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgcccca 76  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42887497 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagaaggtgcccca 42887443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 6281514 - 6281650
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||| |||||||||| ||||||| ||||||| |||||  |||||||||||||||| |   || |||||| ||||| ||  ||||||||||||      
T  6281514 gaggaggagcaggaggacatgctattttgatcctcaatcaaaacaaggtgccccagggactttagcgggcaacccgattgacttgtgtgacgaggaag-- 6281611  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||| |||||| || |||||||||||||||||||||    
T  6281612 -aatgaatataatggtttttaatgcctaattgttttggat 6281650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 49572318 - 49572182
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||| |||||| |||||||||||||||||||||  |||||||  ||||| |||   |  |||||| ||||| ||  ||||||||||||      
T  49572318 gaggaggagcgggatgacatgctattttggtcctcaaccaaaacaaggtgccatagggattgtagtgtgcaacccgattgacttgtgtgacgaggaag-- 49572221  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||||||||||||||||||    
T  49572220 -aatgaatgtaatgacttttaatgcctaattgttttggat 49572182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 4784332 - 4784394
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| | ||||||||||||||||    
T  4784332 gaggaggagcggggggacatgctattttggtcctcaaccaaaagaatgtgccccagggactgt 4784394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 47871233 - 47871145
Alignment:
Q  74 ccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    ||||||| |||| |||||||||||||||| ||  |||| ||||||||| |||||||||||||| |||||||  ||||||||| ||||||    
T  47871233 ccagggaatgtcgaggacaacccaattgacttgtgtgaggaggaagatgattgaatgtaatgggttgtaatatctaattgttctggatc 47871145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 49422747 - 49422879
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||| ||||||||||| |||||||||||||||||||||  |||||||||| ||||| |   || ||||||    || ||  ||||||||||||      
T  49422747 gaggaggagtgggaggacatgctattttggtcctcaaccaaaacaaggtgccccaaggactttagcgggcaaccc----gacttgtgtgacgaggaag-- 49422840  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||| ||||||||    
T  49422841 -aatgaatgtaatggcttttaatgcctaattattttggat 49422879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 34528809 - 34528867
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccaggga 80  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||| ||||||    
T  34528809 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcaggga 34528867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 39589977 - 39589915
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||||||  |||||||||    
T  39589977 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgtagggactgt 39589915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 9490683 - 9490623
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggact 82  Q
    |||||||||| |||||||||| |||||||||||||| ||||||  ||||||||||||||||    
T  9490683 gaggaggagctggaggacatgctattttggtcctcagccaaaacaaggtgccccagggact 9490623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 1043941 - 1043879
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||  ||||||| ||||||||||    
T  1043941 gaggaggagcgagagaacatgctattttggtcctcaaccaaaacaaggtgccgcagggactgt 1043879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 4784529 - 4784572
Alignment:
Q  223 ctttgaataaaaat-gcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  4784529 ctttgaataaaaattgcgttttgaataatttcgattaaagtcgc 4784572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 1043785 - 1043720
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| |||||||| ||| |||  |||||||||||||||||||||    
T  1043785 acattttgtttgacattatggtacttagaataaaattgcatttgaaataatttcgattaaagtcgc 1043720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 56139946 - 56139881
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  56139946 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 56139881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 49422919 - 49422975
Alignment:
Q  209 ttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  49422919 ttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 49422975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 49816578 - 49816642
Alignment:
Q  201 cattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||| ||||||||  |||| |||||||||||   |||||||||||||||||||||||| ||||    
T  49816578 cattttgcttgacatattggtactttgaataaattcgcgttttgaataatttcgattaaaatcgc 49816642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 44559481 - 44559544
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtc 263  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||    
T  44559481 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtc 44559544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 17054415 - 17054489
Alignment:
Q  28 gagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattga 102  Q
    ||||||||| ||||| || ||| ||||||| |||||||||||| ||||| ||| |||  | ||||||||||||||    
T  17054415 gagcgggagtacatgctaattttgtcctcagccaaaagcaggtaccccatggattgttgatgacaacccaattga 17054489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 956608 - 956673
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||| ||||||||||||    
T  956608 acattttgtttgacattatggtacttagaataaaatcgcatttggaataattttgattaaagtcgc 956673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 2774086 - 2774025
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaa 260  Q
    |||||||| ||||||||  |||| |||||||||||  |||||||| ||||||||| ||||||    
T  2774086 tacattttgcttgacatattggtactttgaataaatttgcgttttaaataatttcaattaaa 2774025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 9490518 - 9490453
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| |||  |||||||  || ||| ||||||||||||||||||||||    
T  9490518 acattttgtttgacattatggtacttaaaataaaatcgcatttggaataatttcgattaaagtcgc 9490453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 34528963 - 34529028
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||| ||||    
T  34528963 acattttgtttgacattatggtacttcgaataaaatcgcatttggaataatttcgattaaactcgc 34529028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 39589823 - 39589758
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| |||||| |  || ||| ||||||||||||||||||||||    
T  39589823 acattttgtttgacattatggtacttagaataagatcgcatttggaataatttcgattaaagtcgc 39589758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 4784571 - 4784599
Alignment:
Q  237 gcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||||||||||||||||||||||||    
T  4784571 gcgttttgaataatttcgattaaagtcgc 4784599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 7400939 - 7400789
Alignment:
Q  12 attctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtga 111  Q
    |||| |||| |||||||||||| |||||||||||||| ||||||||||||||| |||||||| || |||||||| |||||||||||||||| ||  ||||    
T  7400939 attccaggctgaggaggagcggaaggacatgttatttcggtcctcaaccaaaatcaggtgcctcaaggactgtcgaggacaacccaattgacttgtgtga 7400840  T
Q  112 cgaggaagataattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  7400839 cgaggaagatgattgaatataatggcttgtaatgtctaattgttttggatc 7400789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 7484484 - 7484624
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||  |||| |||||||||    
T  7484484 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtcgaggataacccaattgacttgtgtgatgaggaagat 7484583  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||| |||||||  ||||||||||||||||    
T  7484584 gattgaatgtaatggattgtaatatctaattgttttggatc 7484624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 1972595 - 1972455
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| ||  ||||  || |||||    
T  1972595 gaggaggagcgggaggacatgctattttggtcctcaagcaaaagcaggtgccccagggactgtcgaggacaaaccaattgacttgtgtgattagaaagat 1972496  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||| |||||||  ||||||| ||||||||    
T  1972495 gattgaatgtaatgggttgtaatatctaattgatttggatc 1972455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 8531269 - 8531413
Alignment:
Q  17 aggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgagg 116  Q
    |||| |||||||||||| | ||| ||||| ||||||||||||||||||||| |||||| |||||| ||| | |||||||||||||| ||| |||||||||    
T  8531269 aggctgaggaggagcggaatgacttgttactttggtcctcaaccaaaagcaagtgccctagggaccgtcgacgacaacccaattgacttatgtgacgagg 8531368  T
Q  117 aagataattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    ||||| ||| ||||||||| || |||||| |||||||||||||||    
T  8531369 aagatgattaaatgtaatgactagtaatgtctaattgttttggat 8531413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 6792438 - 6792577
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||| |||||||||||||||| ||  |||| ||| |||||    
T  6792438 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcagatgccctagggactgtcgaggacaacccaattgacttgtgtgatgagcaagat 6792537  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     ||||||| |||||  |||||||  |||||||||||||||    
T  6792538 gattgaatctaatgagttgtaatatctaattgttttggat 6792577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 4723082 - 4723220
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| || ||||| |||||||||||||||| ||  |||| |||||||||    
T  4723082 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggcgccccaagg-ctgtcgaggacaacccaattgactt-tgtgatgaggaagat 4723179  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     ||| |||||||||| |||||||  ||||||||||||||||    
T  4723180 gattaaatgtaatgggttgtaatatctaattgttttggatc 4723220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 3602558 - 3602423
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||| ||||||||||||   |||||| || ||||| ||  ||||||||||||      
T  3602558 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtg-cccagggactgtagcggacaatccgattgacttgtgtgacgaggaag-- 3602462  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  3602461 -aatgaatgtaatggcttttaatgcctaattgttttggat 3602423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 18309477 - 18309341
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||||||| |||||||||   || |||||| ||||  ||  ||||||||||||      
T  18309477 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgcccaagggactgtagcgggcaacccgattgcattgtgtgacgaggaag-- 18309380  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  18309379 -aatgaatgtaatggcttttaatgcctaattgttttggat 18309341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 34682919 - 34683055
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||| |||||||||||||   || |||| | ||||| ||  ||||||||||||      
T  34682919 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggttccccagggactgtagcgggcaactcgattgacttgtgtgacgaggaag-- 34683016  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  34683017 -aatgaatgtaatggcttttaatgcctaattgttttggat 34683055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 38855252 - 38855116
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  38855252 gaggaggagcgggaggacatgttatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 38855155  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  38855154 -aatgaatgtaatggcttttaatgcctaattgttttggat 38855116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 10978508 - 10978405
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||| ||  ||||||||| ||||    
T  10978508 gaggaggagcggaaggacttgttattttggtcctcaaccaaaagcaggttccccaggaactgacgaggacaacccaattgaattttgtgacgagggagat 10978409  T
Q  122 aatt 125  Q
    ||||    
T  10978408 aatt 10978405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 25499299 - 25499162
Alignment:
Q  21 ggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaaga 120  Q
    |||||||||||||||||||||  |||||||||||||||||||||  |||||||||| |||||||   || |||||| ||||| ||  ||||||||   ||    
T  25499299 ggaggaggagcgggaggacatactattttggtcctcaaccaaaacaaggtgccccaaggactgtagcgggcaacccgattgacttgtgtgacgag---ga 25499203  T
Q  121 taattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    | | ||||||||||||||| |||||||||||||||||||||    
T  25499202 tgaatgaatgtaatggcttttaatgcctaattgttttggat 25499162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 11028545 - 11028409
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  11028545 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 11028448  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  11028447 -aatgaatgtaatggcttttaatgcctaattgttttggat 11028409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 19035787 - 19035923
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| ||||| || ||  ||||||||||||      
T  19035787 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccaatcgatttgtgtgacgaggaag-- 19035884  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  19035885 -aatgaatgtaatggcttttaatgcctaattgttttggat 19035923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 31239228 - 31239103
Alignment:
Q  17 aggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgagg 116  Q
    |||| ||||||||| || |||||||| |||||||||||||||||||||||| |||||| |||||||||  |||||||||||||||| ||| | ||| | |    
T  31239228 aggctgaggaggagtggaaggacatgctattttggtcctcaaccaaaagcacgtgccctagggactgtggaggacaacccaattgacttatgagactaag 31239129  T
Q  117 aagataattgaatgtaatggcttgta 142  Q
    ||| | ||| ||||||||||||||||    
T  31239128 aagctgattaaatgtaatggcttgta 31239103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 1399280 - 1399429
Alignment:
Q  9 attattctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaag 108  Q
    |||| ||||||  ||||||||||||||||||||| ||||||| ||||||| |||||  |||||||||||||| |||   | |||||||  |||| ||  |    
T  1399280 attagtctaggttgaggaggagcgggaggacatgctattttgatcctcaatcaaaacaaggtgccccagggattgtagcgaacaacccggttgacttgtg 1399379  T
Q  109 tgacgaggaagataattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    |||||||||||   | ||||||||||||||| |||||||||||||||||||||    
T  1399380 tgacgaggaag---aatgaatgtaatggcttttaatgcctaattgttttggat 1399429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 35566488 - 35566355
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||| |||||| ||||||||| |||||||||||||||||||||  ||||||| ||||||||||   || |||||| ||||| ||  ||||||||||||      
T  35566488 gaggcggagcgtgaggacatgctattttggtcctcaaccaaaacaaggtgcctcagggactgtagcggccaacccgattgacttgtgtgacgaggaag-- 35566391  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttg 158  Q
     ||||||||||||||||  ||||||||||||||||||    
T  35566390 -attgaatgtaatggctcttaatgcctaattgttttg 35566355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 8575253 - 8575389
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || |||||||| |   |||||| || ||||| ||  ||||||||||||      
T  8575253 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactatagcggacaagccgattgatttgtgtgacgaggaag-- 8575350  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  8575351 -aatgaatgtaatggcttttaatgcctaattgttttggat 8575389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 1696026 - 1695946
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattga 102  Q
    ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||| |||||||||| |||||    
T  1696026 gaggaggagcgggaggacatgctattttggccctcagccaaaagcaggtgccccaaggactgtcgaggacaacccgattga 1695946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 13130382 - 13130469
Alignment:
Q  34 gaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||||| |||||||||||||||||||||  |||||||||||| |||||||| |||||||| |||| ||||||| ||||    
T  13130382 gaggacatgttatttttgtcctcaaccaaaagcaggtgtgccagggactgtcgaggacaacacaattgagataagcgacgagggagat 13130469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 27660489 - 27660625
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  |||||||| |||      
T  27660489 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtatcggacaagccgattgatttgtgtgacgagaaag-- 27660586  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||||||||||||||||||    
T  27660587 -aatgaatgtaatgacttttaatgcctaattgttttggat 27660625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 35927072 - 35927132
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggact 82  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  35927072 gaggaggagcgggaggacatgctattttggtcctcaaccaaaagaaggtgccccagggact 35927132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 36349295 - 36349386
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacga 114  Q
    ||||| ||||||||||||||| | |||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||| ||| |||||||    
T  36349295 gaggaagagcgggaggacatgct-ttttggtcctcagccaaaagcaggtgctccagggactgtcgaggacaacccgattgacttatgtgacga 36349386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 20199557 - 20199459
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaaga 120  Q
    ||||||||||||||||||||| |||||||||||||||||||||  | ||||||||||||||||   || |||||| ||||| ||  |||||||||||||    
T  20199557 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaagtgccccagggactgtagcgggcaacccgattgacttgtgtgacgaggaaga 20199459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 6342 - 6478
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   ||  || || ||||| ||  ||||||||||||      
T  6342 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggttaagcctattgatttgtgtgacgaggaag-- 6439  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| | |||||||||||||||||||    
T  6440 -aatgaatgtaatggctttttatgcctaattgttttggat 6478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 11347898 - 11347762
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   || |||||| ||||| ||  || |||||||||      
T  11347898 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcgggcaacccgattgatttgtgttacgaggaag-- 11347801  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | |||||| |||| ||| |||||||||||||||||||||    
T  11347800 -aatgaatgcaatgacttttaatgcctaattgttttggat 11347762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 30710697 - 30710561
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||  |||| |  ||||||||||   |||||| |||||||| ||  |||||||||||||     
T  30710697 gaggaggagcgagaggacatgttatttcggtcctcgaccaaaacaaggtactgcagggactgtagcggacaagccaattgatttgtgtgacgaggaagaa 30710598  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     |   ||||||||| ||| |||||||||||||||||||||    
T  30710597 ta---aatgtaatgacttttaatgcctaattgttttggat 30710561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 31489030 - 31488912
Alignment:
Q  26 aggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataatt 125  Q
    |||||||| | ||| |||||||||| ||   | ||||||||||||| |||||| || || ||||||||||||||||| |||||||| |||| |||| |||    
T  31489030 aggagcggaaagacgtgttattttgatcgctagccaaaagcaggtgtcccaggaaccgttaaggacaacccaattgacttaagtgaagagggagatgatt 31488931  T
Q  126 gaatgtaatggcttgtaat 144  Q
     ||||||||||| ||||||    
T  31488930 aaatgtaatggcgtgtaat 31488912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 8539074 - 8538939
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||| |||||||||| ||||| |||||||||||||||  |||| ||  |||||||||   || |||||| ||||| ||  ||||||||||||      
T  8539074 gaggaggagcaggaggacatgctatttcggtcctcaaccaaaacaaggtaccgtagggactgtagcgggcaacccgattgatttgtgtgacgaggaag-- 8538977  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||| ||||||||    
T  8538976 -aatgaatgtaatggcttttaatgcctaatt-ttttggat 8538939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 35927236 - 35927300
Alignment:
Q  201 cattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||| |||| ||||||||| ||||||||||||  |||||||||||||||||| ||||| ||||    
T  35927236 cattttgcttgtcattatggtactttgaataaaatcgcgttttgaataatttcggttaaaatcgc 35927300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 20197129 - 20197064
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  20197129 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 20197064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 34683084 - 34683149
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| |||||||| ||| |||  |||||||||||||||||||||    
T  34683084 acattttgtttgacattatggtacttagaataaaattgcatttgaaataatttcgattaaagtcgc 34683149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 6792603 - 6792670
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgca 266  Q
    |||||||| ||||||||  |||| |||||||||||   ||||||||||||||||| |||||| |||||    
T  6792603 tacattttgcttgacatattggtactttgaataaattcgcgttttgaataatttcaattaaaatcgca 6792670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 1695866 - 1695800
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||| ||||||||  |||| |||||||||||  | |||||||||||||||| |||||| ||||    
T  1695866 tacattttgcttgacatattggtactttgaataaattttcgttttgaataatttcaattaaaatcgc 1695800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 20197192 - 20197158
Alignment:
Q  127 aatgtaatggcttgtaatgcctaattgttttggat 161  Q
    ||||||||||||| |||||||||||||||||||||    
T  20197192 aatgtaatggcttttaatgcctaattgttttggat 20197158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 3602396 - 3602331
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||| ||||||||||||    
T  3602396 acattttgtttgacattatggtacttagaataaaatcgcatttggaataattttgattaaagtcgc 3602331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 7484701 - 7484729
Alignment:
Q  237 gcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||||||||||||||||||||||||    
T  7484701 gcgttttgaataatttcgattaaagtcgc 7484729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 26487674 - 26487534
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||  || | |||||||||    
T  26487674 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtcaatgacaacccaattgacttgtgtcatgaggaagat 26487575  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||| |||||||  ||||||||||||||||    
T  26487574 gattgaatgtaatgggttgtaatatctaattgttttggatc 26487534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 42167928 - 42168068
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||  |||| |||||||||    
T  42167928 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccggggactgtcgaggacaacccaattgacttgtgtgatgaggaagat 42168027  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||  |||||||  ||||||||||||||||    
T  42168028 gattgaatgtaatgagttgtaatatctaattgttttggatc 42168068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 38032897 - 38033035
Alignment:
Q  23 aggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagata 122  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||| ||  |||| |||||||||     
T  38032897 aggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgtcccggggactgtcgaggacaacccaattgacttgtgtgatgaggaagatg 38032996  T
Q  123 attgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    ||| |||||||||| |||||||  ||||||| |||||||    
T  38032997 attaaatgtaatgggttgtaatatctaattgatttggat 38033035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 28168011 - 28167875
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||   || |||||| ||||| ||  ||||||||||||      
T  28168011 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgtagcgggcaacccgattgacttgtgtgacgaggaag-- 28167914  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  28167913 -aatgaatgtaatggcttttaatgcctaattgttttggat 28167875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 484365 - 484501
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  484365 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 484462  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  484463 -aatgaatgtaatggcttttaatgcctaattgttttggat 484501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 18439290 - 18439426
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||||||| |||||| ||   ||  ||||| ||||| ||  ||||||||||||      
T  18439290 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccctagggacagttgtgggaaacccgattgacttttgtgacgaggaag-- 18439387  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  18439388 -aatgaatgtaatggcttttaatgcctaattgttttggat 18439426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 41855989 - 41856125
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||||||| || ||||||||  ||||||||||||||||||   || |||||| ||||| ||  ||||| ||||||      
T  41855989 gaggaggagcgggaggacatgctattttggttcttaaccaaaacaaggtgccccagggactgtagcgggcaacccgattgatttgtgtgacaaggaag-- 41856086  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | |||||||||||| || |||||||||||||||||||||    
T  41856087 -aatgaatgtaatggtttttaatgcctaattgttttggat 41856125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 19241649 - 19241729
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattga 102  Q
    ||||||||||||||||||||  |||||| ||||||| |||||||||| ||||||||||||||||||||||||||| |||||    
T  19241649 gaggaggagcgggaggacatactatttttgtcctcacccaaaagcagttgccccagggactgtcaaggacaacccgattga 19241729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 19314833 - 19314913
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattga 102  Q
    ||||||||||||||||||||  |||||| ||||||| |||||||||| ||||||||||||||||||||||||||| |||||    
T  19314833 gaggaggagcgggaggacatactatttttgtcctcacccaaaagcagttgccccagggactgtcaaggacaacccgattga 19314913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 10205651 - 10205526
Alignment:
Q  12 attctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtga 111  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||| | |||||||||||||||       ||||||| ||||||| |||||| ||||| ||    
T  10205651 attctaggccgaggaggagcggaaggacttgttattttggtcctgacccaaaagcaggtgcc-------ctgtcaatgacaacctaattgacttaagcga 10205559  T
Q  112 cgaggaagataattgaatgtaatggcttgtaat 144  Q
    | | | |||||||| ||||||||||||||||||    
T  10205558 caaaggagataattaaatgtaatggcttgtaat 10205526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 15031432 - 15031564
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  15031432 gaggaggagcgggaggatatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 15031529  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgtttt 157  Q
     | ||||||||||||||| |||||||||||||||||    
T  15031530 -aatgaatgtaatggcttttaatgcctaattgtttt 15031564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 41276283 - 41276151
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||| ||||||||||   ||  ||||| ||||| ||  ||||||||   |||    
T  41276283 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcagggactgtagcgggaaacccgattgacttgtgtgacgag---gat 41276187  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgtttt 157  Q
     | |||||||| |||||| |||||||||||||||||    
T  41276186 gaatgaatgtagtggcttttaatgcctaattgtttt 41276151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 42604659 - 42604523
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| | |||||||||||||  ||||||||||||||||     || |||||| ||||| ||  ||||||||||||      
T  42604659 gaggaggagcgggaggacatgctatttcgatcctcaaccaaaacaaggtgccccagggactccagtgggcaacccgattgacttgtgtgacgaggaag-- 42604562  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | |||||||||||| || |||||||||||| ||||||||    
T  42604561 -aatgaatgtaatggtttttaatgcctaattattttggat 42604523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 45065883 - 45065749
Alignment:
Q  24 ggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataa 123  Q
    |||||||||| |||||||| ||||| |||||||||||||||  |||| || || |||||||   |||||| || ||||| ||  ||||||||||||   |    
T  45065883 ggaggagcggaaggacatgctatttcggtcctcaaccaaaacaaggtaccgcatggactgtagcggacaagccgattgatttgtgtgacgaggaag---a 45065787  T
Q  124 ttgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     ||||||||||| ||| |||||||||||||||||||||    
T  45065786 atgaatgtaatgacttttaatgcctaattgttttggat 45065749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 24862554 - 24862422
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||| ||||||||||| |||||||||||||||||||||  |||||||  |||||||||   ||  |||||  |||| ||  ||||||||   |||    
T  24862554 gaggaggagtgggaggacatgctattttggtcctcaaccaaaacaaggtgccgtagggactgtagcgggaaacccgtttgacttgtgtgacgag---gat 24862458  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgtttt 157  Q
     | ||||||||||||||| |||||||||||||||||    
T  24862457 gaatgaatgtaatggcttttaatgcctaattgtttt 24862422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 41016961 - 41017097
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||| |||| |||||||||| ||||| |||||||||||||||  |||| || ||||||||||   || |||||| ||||| ||  ||||||| ||||      
T  41016961 gaggatgagcaggaggacatgctatttcggtcctcaaccaaaacaaggtaccacagggactgtagcgggcaacccgattgatttgtgtgacgaagaag-- 41017058  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||||||||||||||||||    
T  41017059 -aatgaatgtaatgacttttaatgcctaattgttttggat 41017097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 22550274 - 22550215
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggac 81  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||| |||||||    
T  22550274 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcagggac 22550215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 27784565 - 27784462
Alignment:
Q  42 gttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataattgaatgtaatggcttgt 141  Q
    ||||||||||||| || |||||||||||||||||||| |||||  |  ||||||||||||| ||| |||| |||| | || ||| ||||||||||||| |    
T  27784565 gttattttggtccacagccaaaagcaggtgccccaggaactgttgataacaacccaattgacttatgtgatgagggaaatgattaaatgtaatggcttat 27784466  T
Q  142 aatg 145  Q
    ||||    
T  27784465 aatg 27784462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 24629038 - 24629174
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||| |  ||||| || ||||| | ||||||||||||||||||| ||||||| || |   ||||||||  |||||| |||  |||| ||  ||||    
T  24629038 gaggaggagggaaaggacttggtatttggatcctcaaccaaaagcaggttccccaggaacag---aggacaacttaattgacttatatgacaagtgagat 24629134  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     ||| ||||||||||||||||||| |||||||||||||||    
T  24629135 gattaaatgtaatggcttgtaatgtctaattgttttggat 24629174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 40703569 - 40703436
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||  ||||||||| ||||| | |||||||||||||  ||||||||||||||||||   |  |||||| ||||| ||  ||||||||||||      
T  40703569 gaggaggagcaagaggacatgctatttcgatcctcaaccaaaacaaggtgccccagggactgtagtgtgcaacccgattgacttgtgtgacgaggaag-- 40703472  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttg 158  Q
    |||| |||||||||| || |||||||||||| |||||    
T  40703471 aatt-aatgtaatggtttttaatgcctaattattttg 40703436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 31171080 - 31171190
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||| |||  ||||||||||| |||||||| | ||||| |||| ||| | |||||||| || ||||| ||||||| ||  |||| || ||||||    
T  31171080 gaggaggagcaggaatacatgttatttcggtcctcagcaaaaagtaggt-ccctatggactgtcgagaacaactcaattgatttgtgtgatgaagaagat 31171178  T
Q  122 aattgaatgtaa 133  Q
    ||||||||||||    
T  31171179 aattgaatgtaa 31171190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 40703406 - 40703339
Alignment:
Q  198 ctacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  40703406 ctacattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 40703339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 44051636 - 44051578
Alignment:
Q  26 aggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||||||||||||||| ||||||||||||||| ||||||  ||||||  |||||||||    
T  44051636 aggagcgggaggacatgctattttggtcctcaatcaaaagagggtgccgtagggactgt 44051578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 18439455 - 18439520
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  18439455 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 18439520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 26487522 - 26487455
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgca 266  Q
    |||||||| ||||||||  |||| |||||||||||  |||||||| ||||||||| |||||| |||||    
T  26487522 tacattttgcttgacatattggtactttgaataaatttgcgttttaaataatttcaattaaaatcgca 26487455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 24862389 - 24862324
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||| ||||||||    
T  24862389 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgatgaaagtcgc 24862324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 41276113 - 41276048
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || |||  |||||||||||||||||||||    
T  41276113 acattttgtttgacattatggtacttagaataaaatcgcatttgaaataatttcgattaaagtcgc 41276048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 44051486 - 44051421
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| |||||||| ||| |||  |||| ||||||||||||||||    
T  44051486 acattttgtttgacattatggtacttagaataaaattgcatttgaaatagtttcgattaaagtcgc 44051421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 42604485 - 42604429
Alignment:
Q  209 ttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    ||||||||||||| ||| ||||||||  |  ||| ||||||||||||||||||||||    
T  42604485 ttgacattatggtacttggaataaaatcgtatttggaataatttcgattaaagtcgc 42604429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 61)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 44928686 - 44928546
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| ||  |||| |||||||||    
T  44928686 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggttccccagggactgtcgaggacaacccaattgaattgtgtgatgaggaagat 44928587  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||| |||||||  ||||||||||||||||    
T  44928586 gattgaatgtaatgggttgtaatatctaattgttttggatc 44928546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 51012277 - 51012417
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||  |||| |||||| ||    
T  51012277 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccaggaactgtcaaggacaacccaattgacttgtgtgatgaggaatat 51012376  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||| |||||||  ||||||||||||||||    
T  51012377 gattgaatgtaatgggttgtaatatctaattgttttggatc 51012417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 11377972 - 11378112
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||  |||| |||||||||    
T  11377972 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccctagggactgtcgaggacaacccaattgacttgtgtgatgaggaagat 11378071  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||  |||||||  ||||||||||||||||    
T  11378072 gattgaatgtaatgttttgtaatatctaattgttttggatc 11378112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 34471052 - 34471192
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |||| ||||||||||| ||  |||| |||||||||    
T  34471052 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccctagggactgtcgaggaaaacccaattgacttgtgtgatgaggaagat 34471151  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||  |||||||  ||||||||||||||||    
T  34471152 gattgaatgtaatgagttgtaatagctaattgttttggatc 34471192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 27096671 - 27096822
Alignment:
Q  12 attctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtga 111  Q
    ||||||||  ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||  |||||| |||||||||||||||| ||  ||||    
T  27096671 attctaggttgaggaggagcgggaggacatgctattttggctctcaaccaaaagcaggtgccccagaaactgtcgaggacaacccaattgacttgtgtga 27096770  T
Q  112 cgaggaagat-aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    ||||||| || ||||||||||||||| || |||||||||||| |||||||||    
T  27096771 cgaggaaaatgaattgaatgtaatggtttctaatgcctaattattttggatc 27096822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 50458241 - 50458380
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||  |||  |||||||||    
T  50458241 gaggaagagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtcgaggacaacccaattgacttgtgtggtgaggaagat 50458340  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | |||||||||||| |||||||  |||||||||||||||    
T  50458341 gaatgaatgtaatgggttgtaatatctaattgttttggat 50458380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 50341423 - 50341573
Alignment:
Q  12 attctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtga 111  Q
    |||| |||| |||||||||||| ||||||||||||||   |||| |||||||||||||||||| |||||||||| ||||||| |||||||| ||  ||||    
T  50341423 attccaggctgaggaggagcggaaggacatgttatttctatcctaaaccaaaagcaggtgccctagggactgtcgaggacaatccaattgacttgtgtga 50341522  T
Q  112 cgaggaagataattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    | |||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  50341523 caaggaagatgattgaatgaaatggcttgtaatgtctaattgttttggatc 50341573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 20374968 - 20375107
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||| |||||| ||| |||| |  || |||||| ||||| ||| ||||||||||||||    
T  20374968 gaggaggagcgggaggacatgctattttggtcatcaaccaaaagcaagtgcccaagg-actgccgcgggcaacccgattgacttatgtgacgaggaagat 20375066  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     ||||||||||||||||| ||||||||||||||||||||||    
T  20375067 gattgaatgtaatggcttctaatgcctaattgttttggatc 20375107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 265
Target Start/End: Complemental strand, 27188299 - 27188054
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||||| |||||||  |||||||  || |||||||||||||   | || ||| ||||| ||  |||| |||||||||    
T  27188299 gaggaggagcgggaggacatgctattttgctcctcaattaaaagcaaatgtcccagggactgtcgcaggcatcccgattgacttgtgtgatgaggaagat 27188200  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatcnnnnnnnnnnnnnnnnatatgtcgcgcacattttgctacattttccttgacattatggt 221  Q
      ||||||||| ||||||||||| |||||||||||||||||                |||||| ||||  |||||||||||||||||||||||| |||||    
T  27188199 gcttgaatgtagtggcttgtaatacctaattgttttggatcctttttttgtttttttatatgttgcgcggattttgctacattttccttgacatgatggt 27188100  T
Q  222 gc-tttgaataaaaat-gcgttttgaataatttcgattaaagtcgc 265  Q
    || ||||||||||||| | |||||||||||||||||||||||||||    
T  27188099 gcttttgaataaaaatcgtgttttgaataatttcgattaaagtcgc 27188054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 51016501 - 51016374
Alignment:
Q  35 aggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataattgaatgtaat 134  Q
    |||||||| |||||||||||||| |||||||||||||||||| |||||||| | |||||||||||||| ||  |||| ||||||||| ||||||||||||    
T  51016501 aggacatgctattttggtcctcagccaaaagcaggtgccccatggactgtcgaagacaacccaattgacttgtgtgatgaggaagatgattgaatgtaat 51016402  T
Q  135 ggcttgtaatgcctaattgttttggatc 162  Q
    || |||||||  ||||||||||||||||    
T  51016401 gggttgtaatatctaattgttttggatc 51016374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 30193778 - 30193621
Alignment:
Q  5 gtatattattctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagt 104  Q
    |||||| |||| |||  ||||||||||||| ||||||||| ||||||||||||  ||||| ||||||||||| |||||||| | |||||||||||||| |    
T  30193778 gtatatcattcgaggttgaggaggagcgggtggacatgttgttttggtcctcagtcaaaaacaggtgccccatggactgtcgaagacaacccaattgact 30193679  T
Q  105 taagtgacgaggaagataattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    |  |||| ||||||||| |||||||||||||| |||||||  |||||| |||||||||    
T  30193678 tgtgtgatgaggaagatgattgaatgtaatgggttgtaatagctaattattttggatc 30193621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 49274645 - 49274505
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| ||  || |||||||||||    
T  49274645 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgtcccagggactgtcgaggacaacccaattgacttgtgttacgaggaagat 49274546  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     ||  ||| ||| || |||||||  |||||||||| |||||    
T  49274545 gatataatataacgggttgtaatatctaattgtttcggatc 49274505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 45099460 - 45099596
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||| |||||||||||   || |||||| ||||| ||  ||||||||||||      
T  45099460 gaggatgagcgggaggacatgttattttggtcctcaaccaaaacaaggtgcaccagggactgtagcgggcaacccgattgacttttgtgacgaggaag-- 45099557  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  45099558 -aatgaatgtaatggcttttaatgcctaattgttttggat 45099596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 34050837 - 34050701
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  34050837 gaggaggagcgggaggacatgttatttcggtcctcaaccaaaacaaggtaccacagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 34050740  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  34050739 -aatgaatgtaatggcttttaatgcctaattgttttggat 34050701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 3494134 - 3494269
Alignment:
Q  23 aggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagata 122  Q
    |||||||||||||||||||| ||||| |||||||||||||||  |||| || |||||||| |   |||||| |||||||| ||| ||||||||||||       
T  3494134 aggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactatagcggacaagccaattgatttatgtgacgaggaag--- 3494230  T
Q  123 attgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    | ||||||||||||||| |||||||||||||||||||||    
T  3494231 aatgaatgtaatggcttttaatgcctaattgttttggat 3494269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 10052348 - 10052487
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||| ||| |||| | |||||||||||||||||| ||| |||| |||||||||||||||| ||  |||| | |||||||    
T  10052348 gaggaggagcgggaggacatgctatattg-tccttagccaaaagcaggtgccccatggattgtcgaggacaacccaattgacttgtgtgatgcggaagat 10052446  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||  |||||||  ||||||||||||||||    
T  10052447 gattgaatgtaatgtgttgtaatatctaattgttttggatc 10052487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 14632693 - 14632572
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| ||||| |||||||||| ||  || | | |||||||    
T  14632693 gaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccctagggactgtcgaggacgacccaattgacttgtgt-atgtggaagat 14632595  T
Q  122 aattgaatgtaatggcttgtaat 144  Q
     ||| |||||||||| |||||||    
T  14632594 gattaaatgtaatgggttgtaat 14632572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 2645985 - 2646121
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  2645985 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 2646082  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  2646083 -aatgaatgtaatggcttttaatgcctaattgttttggat 2646121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 46406115 - 46405979
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  46406115 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 46406018  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  46406017 -aatgaatgtaatggcttttaatgcctaattgttttggat 46405979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 54391552 - 54391416
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  54391552 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 54391455  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  54391454 -aatgaatgtaatggcttttaatgcctaattgttttggat 54391416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 13894896 - 13895030
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||| ||||  |||||||||||||| ||| | || |||||| ||||| ||  ||||| ||||||      
T  13894896 gaggaggagcgggaggacatgctattttggtcctcaacaaaaacaaggtgccccagggattgt-aggggcaacccgattgacttgtgtgacaaggaag-- 13894992  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttgga 160  Q
     | ||||||||||||||| ||||||||||||||||||||    
T  13894993 -aatgaatgtaatggcttttaatgcctaattgttttgga 13895030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 46413281 - 46413420
Alignment:
Q  24 ggaggagcgggaggacatgttattttggtcctcaaccaaaagcagg-tgcccc-agggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||| ||||| | |||||| ||||||||||| |||||| ||||||| || |||||||||||||||| ||  |||| |||||||||    
T  46413281 ggaggagcgggaggacatgatattt-gatcctcagccaaaagcagggtgcccccagggactatcgaggacaacccaattgacttgtgtgatgaggaagat 46413379  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||  |||||||  ||||||||||||||||    
T  46413380 gattgaatgtaatgagttgtaatatctaattgttttggatc 46413420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 55205932 - 55206067
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||   || |||||  ||||| ||  |||||||||||||     
T  55205932 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtgccccagggactgtagtgggcaacctgattgacttgtgtgacgaggaaga- 55206030  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
       |||||||||||| || |||||||||||| ||||||||    
T  55206031 ---tgaatgtaatggtttttaatgcctaattcttttggat 55206067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 41579136 - 41579000
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||| |||||| |||||||||||||||||||||  ||||||||||| |||| |   || |||||  ||||| ||  ||||||||||||      
T  41579136 gaggaggagcgggaagacatgctattttggtcctcaaccaaaacaaggtgccccagtgactatagcgggcaacctgattgacttgtgtgacgaggaag-- 41579039  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  41579038 -aatgaatgtaatggcttttaatgcctaattgttttggat 41579000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 49139163 - 49139299
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  49139163 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 49139260  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||||||||||||||||||    
T  49139261 -aatgaatgtaatgacttttaatgcctaattgttttggat 49139299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 55268070 - 55268206
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||  |||||||||||||||| |   || |||||| ||||| ||  ||||||||||||      
T  55268070 gaggaggagcgggaggacatgctatttcggtcctgaaccaaaacaaggtgccccagggactctagtgggcaacccgattgacttgtgtgacgaggaag-- 55268167  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | |||||||||||| || |||||||||||||||||||||    
T  55268168 -aatgaatgtaatggtttttaatgcctaattgttttggat 55268206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 2429691 - 2429562
Alignment:
Q  26 aggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataatt 125  Q
    |||||||||| |||||| |||||||||||||||||||||  |||||||||||||||| |   || |||||| ||||| ||  ||||||||||||   | |    
T  2429691 aggagcgggaagacatgctattttggtcctcaaccaaaacaaggtgccccagggactatagcgggcaacccgattgacttgtgtgacgaggaag---aat 2429595  T
Q  126 gaatgtaatggcttgtaatgcctaattgttttg 158  Q
    |||||||||||||| |||||||||||| |||||    
T  2429594 gaatgtaatggcttttaatgcctaattattttg 2429562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 17371862 - 17371756
Alignment:
Q  38 acatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataattgaatgtaatggc 137  Q
    ||||||||||||||||| |||||||||| |||||| | ||| |||||| |||||||||||||||| |||||||| |||| |||| ||| || ||||||||    
T  17371862 acatgttattttggtccacaaccaaaagtaggtgctctaggaactgtcgaggacaacccaattgacttaagtgatgagggagatgattaaaagtaatggc 17371763  T
Q  138 ttgtaat 144  Q
     ||||||    
T  17371762 ctgtaat 17371756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 2267594 - 2267730
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   ||  || || ||||| ||  ||||||||||||      
T  2267594 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcgggtaagccgattgatttgtgtgacgaggaag-- 2267691  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  2267692 -aatgaatgtaatggcttttaatgcctaattgttttggat 2267730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 43571093 - 43570957
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||||||||||| ||||||   ||||||| ||||||||||   || |||||| ||||| ||  ||||||||||||      
T  43571093 gaggaggagcgggaggacatgctattttggtcctcgaccaaatcaaggtgcctcagggactgtagcgggcaacccgattgacttgtgtgacgaggaag-- 43570996  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||| ||||||| |||||||||||||||| ||||    
T  43570995 -aatgaatgtgatggcttttaatgcctaattgtttcggat 43570957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 46345596 - 46345732
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||| |||||||||||||| ||||| |||||||||| ||||  |||||||||| |||||||   || |||| | ||||| ||  ||||||||||  ||    
T  46345596 gaggagcagcgggaggacatgctatttcggtcctcaacaaaaacaaggtgccccatggactgtagcgggcaactcgattgacttgtgtgacgagga--at 46345693  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    || ||||||||||||||| |||||||||||||||||||||    
T  46345694 aa-tgaatgtaatggcttttaatgcctaattgttttggat 46345732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 7247270 - 7247133
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccaggg-actgtcaaggacaacccaattgagttaagtgacgaggaaga 120  Q
    ||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||| | | |   || |||||| ||||| ||  ||||||||||||     
T  7247270 gaggaggagcgagaggacatgctattttggtcctcaaccaaaacaaggtgccccagggaaatatagcgggcaacccgattgacttgtgtgacgaggaag- 7247172  T
Q  121 taattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
      | ||||||||||||| | |||||||||||||||||||||    
T  7247171 --aatgaatgtaatggcatttaatgcctaattgttttggat 7247133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 4003263 - 4003399
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||| |||||||| ||||| |||||||||||||||  |||| || ||||||||||   || |||||| ||||| ||   |||||| ||||      
T  4003263 gaggaggagcggaaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcgggcaacccgattgatttgtctgacgacgaag-- 4003360  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  4003361 -aatgaatgtaatggcttttaatgcctaattgttttggat 4003399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 20375138 - 20375203
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    ||||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  20375138 acattttgcttgacattatggtgctttgaataaaattgtattttgaataatttcgattaaagtcgc 20375203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 51694545 - 51694677
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||  ||||| | ||||||||||   ||  ||||||||||| ||  ||||||||   |||    
T  51694545 gaggaggagcgggaggacatgctattttgttcctaaaccaaaacaaggtgtcgcagggactgtagcgggaaacccaattgacttgtgtgacgag---gat 51694641  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgtttt 157  Q
     | ||||||||||||||| |||||||||||||||||    
T  51694642 gaatgaatgtaatggcttttaatgcctaattgtttt 51694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 34646212 - 34646274
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||||||| ||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  34646212 gaggaggagtgggaggacatgctattttggtcctcaaccaaaagaaggtgccctagggactgt 34646274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 49611365 - 49611303
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||| ||||||||||    
T  49611365 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcagggactgt 49611303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 52568430 - 52568563
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||| ||||| ||||||| || ||||||||||  ||||||||||||||||||   || |||| | ||||| ||  ||||| ||||||      
T  52568430 gaggaggagcgggagcacatgctattttgatcatcaaccaaaacaaggtgccccagggactgtagtgggcaacacgattgacttgtgtgacaaggaag-- 52568527  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttg 158  Q
     | ||||||||||||||| |||||||||||| |||||    
T  52568528 -aatgaatgtaatggcttttaatgcctaattattttg 52568563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 36136124 - 36135989
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| ||  |||||| ||   || |||||| ||||| ||  ||||||||||||      
T  36136124 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgaagggac-gtagcgggcaacccgattgatttgtgtgacgaggaag-- 36136028  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| ||||||||| |||||||||||    
T  36136027 -aatgaatgtaatggcttttaatgcctatttgttttggat 36135989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 43478238 - 43478176
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||||||||||||||||||| |||||||||||||||||||||   |||||| ||||||||||    
T  43478238 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacagggtgccgcagggactgt 43478176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 49217738 - 49217800
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    |||||||||||||| |||||| |||||||||||||||||||||  ||||||| ||||||||||    
T  49217738 gaggaggagcgggaagacatgctattttggtcctcaaccaaaacaaggtgccgcagggactgt 49217800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 34692293 - 34692425
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| || ||||||||||||||||||  ||||||| | ||||||||   ||  ||||| ||||| ||  ||||||||   |||    
T  34692293 gaggaggagcgggaggacatgctactttggtcctcaaccaaaacaaggtgccgcggggactgtagcgggaaacccgattgacttgtgtgacgag---gat 34692389  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgtttt 157  Q
     | ||||||||||| ||| ||||||||||| |||||    
T  34692390 gaatgaatgtaatgacttttaatgcctaatagtttt 34692425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 7247104 - 7247039
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| |||||||| ||| ||| ||||||||||||||||||||||    
T  7247104 acattttgtttgacattatggtacttagaataaaattgcatttggaataatttcgattaaagtcgc 7247039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 27096843 - 27096896
Alignment:
Q  179 atatgtcgcgcacattttgctacattttccttgacattatggtgctttgaataa 232  Q
    |||||||||||  ||||||||||||||| |||||||||||||| ||||||||||    
T  27096843 atatgtcgcgcttattttgctacatttttcttgacattatggtactttgaataa 27096896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 3497828 - 3497887
Alignment:
Q  23 aggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggact 82  Q
    |||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||    
T  3497828 aggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggact 3497887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 13895058 - 13895123
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  13895058 acattttgtttgacattatggtacttagaataaaatcgcatttagaataatttcgattaaagtcgc 13895123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 24701453 - 24701518
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  24701453 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 24701518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 49274482 - 49274421
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaa 260  Q
    |||||||||||||||||  |||| |||||||||||   ||||||||||||||||| ||||||    
T  49274482 tacattttccttgacatattggtactttgaataaattcgcgttttgaataatttcaattaaa 49274421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 49611202 - 49611146
Alignment:
Q  209 ttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  49611202 ttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 49611146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 45099626 - 45099689
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtc 263  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||    
T  45099626 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtc 45099689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 30193599 - 30193533
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||| ||||||||  |||| |||||||||||   || ||| ||||||||||||||||||||||    
T  30193599 tacattttgcttgacatattggtactttgaataaattcgcatttggaataatttcgattaaagtcgc 30193533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 44928534 - 44928468
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||| ||||||||  |||| |||||||||||  |||||||| ||||||||| |||||| ||||    
T  44928534 tacattttgcttgacatattggtactttgaataaatttgcgttttaaataatttcaattaaaatcgc 44928468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 51012431 - 51012497
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||| ||||||||  |||| |||||||||||  |||||||| ||||||||| |||||| ||||    
T  51012431 tacattttgcttgacatattggtactttgaataaatttgcgttttaaataatttcaattaaaatcgc 51012497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 2429530 - 2429465
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || |||  |||||||||||||||||||||    
T  2429530 acattttgtttgacattatggtacttagaataaaatcgcatttgaaataatttcgattaaagtcgc 2429465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 41578971 - 41578906
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||| ||||||||||||    
T  41578971 acattttgtttgacattatggtacttagaataaaatcgcatttggaataattttgattaaagtcgc 41578906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 43570928 - 43570863
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| |||||||||| |||||||||||    
T  43570928 acattttatttgacattatggtacttagaataaaatcgcatttggaataatttcaattaaagtcgc 43570863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 51695126 - 51695179
Alignment:
Q  212 acattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  51695126 acattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 51695179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 55268233 - 55268298
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||| | ||| |||||||| | | ||| ||||||||||||||||||||||    
T  55268233 acattttgtttgacattatgctacttagaataaaatttcatttggaataatttcgattaaagtcgc 55268298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 10052512 - 10052576
Alignment:
Q  202 attttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgca 266  Q
    ||||| ||||||||  |||| |||||||||||   ||||||||||||||||| |||||| |||||    
T  10052512 attttgcttgacatattggtactttgaataaattcgcgttttgaataatttcaattaaaatcgca 10052576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 44928469 - 44928441
Alignment:
Q  237 gcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||||||||||||||||||||||||    
T  44928469 gcgttttgaataatttcgattaaagtcgc 44928441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 49217904 - 49217968
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcg 264  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||| |||||||||||    
T  49217904 acattttgtttgacattatggtacttagaataaaatcgcatttggaataattttgattaaagtcg 49217968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 9707 - 9569
Alignment:
Q  23 aggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagata 122  Q
    ||||||||||| |||||||||||||||||||||||||||||| || |||||| ||||||| || |||||||||||||||| ||| |||| |||||||||     
T  9707 aggaggagcggaaggacatgttattttggtcctcaaccaaaatcatgtgccctagggactatcgaggacaacccaattgacttatgtgaagaggaagatg 9608  T
Q  123 attgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    ||| ||||||||||||||||||| |||||||||||||||    
T  9607 attaaatgtaatggcttgtaatgtctaattgttttggat 9569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 30763962 - 30764112
Alignment:
Q  12 attctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtga 111  Q
    |||| |||| |||||||||||| | |||||||||||| |||||||||||||||||  |||||||| |||||||| |||||||||||||||| ||  ||||    
T  30763962 attccaggctgaggaggagcggaatgacatgttatttcggtcctcaaccaaaagcgagtgccccatggactgtcgaggacaacccaattgacttgtgtga 30764061  T
Q  112 cgaggaagataattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    ||||||| || ||||||||||||||||||||||| ||||||||||||||||    
T  30764062 cgaggaaaatgattgaatgtaatggcttgtaatgtctaattgttttggatc 30764112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 14123924 - 14123681
Alignment:
Q  23 aggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagata 122  Q
    |||||||| ||||||||||| || ||||||||| || |||||| ||||||| ||||||||||   || |||||| ||||| ||  ||||||| ||||||     
T  14123924 aggaggagtgggaggacatgctactttggtccttaatcaaaagtaggtgccgcagggactgtagcgggcaacccgattgacttgtgtgacgatgaagatg 14123825  T
Q  123 attgaatgtaatggcttgtaatgcctaattgttttggatc-nnnnnnnnnnnnnnnnatatgtcgcgcacattttgctacattttccttgacattatggt 221  Q
    | ||||||||||| ||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||    
T  14123824 aatgaatgtaatgacttgtaatgcctaattgttttggatcttttttatgtttttttaatatgtcgcgcacattttgctacattttccttgacattatggt 14123725  T
Q  222 gc-tttgaataaaaat-gcgttttgaataatttcgattaaagtc 263  Q
    || ||||||||||||| | ||||||||||||||| |||||||||    
T  14123724 gcttttgaataaaaatcgtgttttgaataatttcaattaaagtc 14123681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 20241342 - 20241482
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||| |||||  ||| ||||||||||||||||||||||||||| ||| |||||||||  |||||||||||||||| ||  ||||||||||||||    
T  20241342 gaggaggagcaggaggttatgctattttggtcctcaaccaaaagcaggttcccaagggactgttgaggacaacccaattgacttgtgtgacgaggaagat 20241441  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     ||||||||||||||||||||||| |||||| |||||||||    
T  20241442 gattgaatgtaatggcttgtaatgtctaattattttggatc 20241482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 22135326 - 22135466
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||| |||||  ||| ||||||||||||||||||||||||||| ||| |||||||||  |||||||||||||||| ||  ||||||||||||||    
T  22135326 gaggaggagcaggaggttatgctattttggtcctcaaccaaaagcaggttcccaagggactgttgaggacaacccaattgacttgtgtgacgaggaagat 22135425  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     ||||||||||||||||||||||| |||||| |||||||||    
T  22135426 gattgaatgtaatggcttgtaatgtctaattattttggatc 22135466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 22142679 - 22142819
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||| |||||  ||| ||||||||||||||||||||||||||| ||| |||||||||  |||||||||||||||| ||  ||||||||||||||    
T  22142679 gaggaggagcaggaggttatgctattttggtcctcaaccaaaagcaggttcccaagggactgttgaggacaacccaattgacttgtgtgacgaggaagat 22142778  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     ||||||||||||||||||||||| |||||| |||||||||    
T  22142779 gattgaatgtaatggcttgtaatgtctaattattttggatc 22142819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 12398013 - 12397875
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||  |||| |||||||||    
T  12398013 gaggaggagcgggaggacatgatattttggtcctcagccaaaagcaggtgccc-agggactgtcgaggacaacccaattgacttgtgtgatgaggaagat 12397915  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     ||||||||||||||  ||||||  |||||||||||||||    
T  12397914 gattgaatgtaatgggctgtaatatctaattgttttggat 12397875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 33201509 - 33201361
Alignment:
Q  12 attctaggcggaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtga 111  Q
    |||| |||| ||||| |||||| |||||||||||| | ||||||||||||||| ||||||| ||||||| |||| ||||||||| |||||| ||  ||||    
T  33201509 attccaggctgaggaagagcggaaggacatgttatatcggtcctcaaccaaaatcaggtgcgccagggaatgtcgaggacaacctaattgacttgtgtga 33201410  T
Q  112 cgaggaagataattgaatgtaatggcttgtaatgcctaattgttttgga 160  Q
    |||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  33201409 cgaggaagatgattgaatgtaatgacttgtaatgtctaattgttttgga 33201361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 17464488 - 17464613
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||||| |||| ||||||| ||||    
T  17464488 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgtcccagggactgttgaagacaacccaattgagataagcgacgagggagat 17464587  T
Q  122 aatt---gaatgtaatggcttgtaat 144  Q
    ||||    ||||||||||||||||||    
T  17464588 aattaaataatgtaatggcttgtaat 17464613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 11181812 - 11181933
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| |  ||| |||| |||||||||||||||| ||||| ||||| | ||||    
T  11181812 gaggaggagcggaatgacatgttattttggtcctcaaccaaaagcaggtgccactaggattgtcgaggacaacccaattgacttaagcgacgaaggagat 11181911  T
Q  122 aattgaatgtaatggcttgtaat 144  Q
    |||| ||||||||| ||||||||    
T  11181912 aatt-aatgtaatgacttgtaat 11181933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 27641274 - 27641138
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| |||||||| ||  ||||||||||||      
T  27641274 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccaattgatttgtgtgacgaggaag-- 27641177  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  27641176 -aatgaatgtaatggcttttaatgcctaattgttttggat 27641138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 21863907 - 21864045
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||| ||||| ||||||||||| |||||||||| | |||||||| ||||||||| ||||||| |||||||||||||||| ||| ||||||||||||||    
T  21863907 gaggagaagcggaaggacatgttactttggtcctcgatcaaaagcatgtgccccagagactgtcgaggacaacccaattgacttatgtgacgaggaagat 21864006  T
Q  122 aattgaatgta---atggcttgtaatgcctaattgtttt 157  Q
     ||| ||| ||   ||||||||||||| |||| ||||||    
T  21864007 gattaaatataatgatggcttgtaatgtctaactgtttt 21864045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 6206584 - 6206448
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  6206584 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 6206487  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  6206486 -aatgaatgtaatggcttttaatgcctaattgttttggat 6206448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 11693551 - 11693415
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  11693551 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 11693454  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  11693453 -aatgaatgtaatggcttttaatgcctaattgttttggat 11693415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 13616890 - 13617026
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||   |  |||||| ||||| ||  ||||| ||||||      
T  13616890 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgtagcgagcaacccgattgacttgtgtgacaaggaag-- 13616987  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | |||||||||||||||  ||||||||||||||||||||    
T  13616988 -aatgaatgtaatggctttcaatgcctaattgttttggat 13617026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 32026614 - 32026750
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||| ||||||| |||||||||||||||||||||  ||||||||||||||||||   || |||||| ||||| ||  |||| |||||||      
T  32026614 gaggaggagcgggtggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgtagcgggcaacccgattgacttgtgtgatgaggaag-- 32026711  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||||||||||||||||||    
T  32026712 -aatgaatgtaatgacttttaatgcctaattgttttggat 32026750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 32036673 - 32036809
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||| ||||||| |||||||||||||||||||||  ||||||||||||||||||   || |||||| ||||| ||  |||| |||||||      
T  32036673 gaggaggagcgggtggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgtagcgggcaacccgattgacttgtgtgatgaggaag-- 32036770  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||||||||||||||||||    
T  32036771 -aatgaatgtaatgacttttaatgcctaattgttttggat 32036809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 32133662 - 32133799
Alignment:
Q  25 gaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataat 124  Q
    |||||| | ||||||||| |||||||||||||| |||||||||||| |||||||||||||| | |||||||  |||||  |  |||||||||||||| |     
T  32133662 gaggagtgagaggacatgctattttggtcctcagccaaaagcaggttccccagggactgtcgatgacaacctgattgacctgtgtgacgaggaagatgaa 32133761  T
Q  125 tgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    ||||||||||| ||| |||||| ||||| |||||||||    
T  32133762 tgaatgtaatgacttctaatgcgtaattattttggatc 32133799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 32691700 - 32691836
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  32691700 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 32691797  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  32691798 -aatgaatgtaatggcttttaatgcctaattgttttggat 32691836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 14485978 - 14486085
Alignment:
Q  34 gaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataattgaatgtaa 133  Q
    |||||| |||||||||||| ||||||||||||||||||||| ||||| | || ||||||||| |||||| ||||| ||||| |||||||||| |||||||    
T  14485978 gaggacttgttattttggttctcaaccaaaagcaggtgccctagggaatatcgaggacaacctaattgacttaagcgacgaagaagataattaaatgtaa 14486077  T
Q  134 tggcttgt 141  Q
    || |||||    
T  14486078 tgacttgt 14486085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 35020248 - 35020381
Alignment:
Q  24 ggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataa 123  Q
    ||||||||||||||||||||||||| |||||||||||||||  |||||||| ||||||||| |  | |||||| ||||| ||  ||||||||||||   |    
T  35020248 ggaggagcgggaggacatgttatttcggtcctcaaccaaaacaaggtgccctagggactgt-agtggcaacccgattgacttgtgtgacgaggaag---a 35020343  T
Q  124 ttgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     |||||||||||| || |||||||||||||||||||||    
T  35020344 atgaatgtaatggtttttaatgcctaattgttttggat 35020381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 13404028 - 13403892
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||  ||||||||||||||||||   || |||||| || || ||  |||| |||||||      
T  13404028 gaggaggagcgagaggacatgctatttcggtcctcaaccaaaaaaaggtgccccagggactgtagcgggcaacccgatagacttgtgtgaagaggaag-- 13403931  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  13403930 -aatgaatgtaatggcttttaatgcctaattgttttggat 13403892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 20245232 - 20245097
Alignment:
Q  26 aggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataatt 125  Q
    |||||||| ||||  |||||||||||||| ||||||||| || || || || | | |||  |||||||||||||||| ||||||||||| | |||  |||    
T  20245232 aggagcggaaggatgtgttattttggtccacaaccaaaaacaagttcctcaagaattgttgaggacaacccaattgacttaagtgacgatggagaggatt 20245133  T
Q  126 gaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    |||||||||||||||||||| || ||| ||||||||    
T  20245132 gaatgtaatggcttgtaatgtcttatttttttggat 20245097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 22139216 - 22139081
Alignment:
Q  26 aggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataatt 125  Q
    |||||||| ||||  |||||||||||||| ||||||||| || || || || | | |||  |||||||||||||||| ||||||||||| | |||  |||    
T  22139216 aggagcggaaggatgtgttattttggtccacaaccaaaaacaagttcctcaagaattgttgaggacaacccaattgacttaagtgacgatggagaggatt 22139117  T
Q  126 gaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    |||||||||||||||||||| || ||| ||||||||    
T  22139116 gaatgtaatggcttgtaatgtcttatttttttggat 22139081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 34802174 - 34802310
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||| ||||||||||||||  ||||||||||||||||||    | ||||||  |||| ||  ||||||||||||      
T  34802174 gaggaggagcgggaggacatgctatttttgtcctcaaccaaaacaaggtgccccagggactgtagcaggcaacccggttgacttgtgtgacgaggaag-- 34802271  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| ||||||||| |||||| ||||    
T  34802272 -aatgaatgtaatgacttttaatgcctatttgtttaggat 34802310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 29067692 - 29067630
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||| ||||||||||||||| |||||||||||||||||||||  ||||||| ||||| ||||    
T  29067692 gaggatgagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcaggggctgt 29067630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 29109281 - 29109219
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgt 84  Q
    ||||| ||||||||||||||| |||||||||||||||||||||  ||||||| ||||| ||||    
T  29109281 gaggatgagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcaggggctgt 29109219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 19243876 - 19243796
Alignment:
Q  36 ggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgagg 116  Q
    ||||||||||||||||||| |||| ||||  ||||| |||||  | |||||||||||| || ||||| |||||||||||||    
T  19243876 ggacatgttattttggtccacaacaaaaattaggtgtcccagaaattgtcaaggacaatcctattgacttaagtgacgagg 19243796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 13617055 - 13617120
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  13617055 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 13617120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 14283570 - 14283513
Alignment:
Q  87 aggacaacccaattgagttaagtgacgaggaagataattgaatgtaatggcttgtaat 144  Q
    |||||||||||||||||||||| ||||| | ||||| || ||||||||| ||||||||    
T  14283570 aggacaacccaattgagttaagcgacgatggagatacttaaatgtaatgccttgtaat 14283513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 20241512 - 20241585
Alignment:
Q  191 cattttgctacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcg 264  Q
    ||||||| || |||||  ||||||||| ||| |||||||||||    ||| |||||||||||||||||||||||    
T  20241512 cattttggtatattttggttgacattaaggtactttgaataaagtcacgtattgaataatttcgattaaagtcg 20241585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 22135496 - 22135569
Alignment:
Q  191 cattttgctacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcg 264  Q
    ||||||| || |||||  ||||||||| ||| |||||||||||    ||| |||||||||||||||||||||||    
T  22135496 cattttggtatattttggttgacattaaggtactttgaataaagtcacgtattgaataatttcgattaaagtcg 22135569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 22142849 - 22142922
Alignment:
Q  191 cattttgctacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcg 264  Q
    ||||||| || |||||  ||||||||| ||| |||||||||||    ||| |||||||||||||||||||||||    
T  22142849 cattttggtatattttggttgacattaaggtactttgaataaagtcacgtattgaataatttcgattaaagtcg 22142922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 29067538 - 29067473
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||| ||||    
T  29067538 acattttgtttgacattatggtacttggaataaaatcgcatttggaataatttcgattaaactcgc 29067473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 29109127 - 29109062
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||| ||||    
T  29109127 acattttgtttgacattatggtacttggaataaaatcgcatttggaataatttcgattaaactcgc 29109062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 12397797 - 12397769
Alignment:
Q  237 gcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||||||||||||||||||||||||    
T  12397797 gcgttttgaataatttcgattaaagtcgc 12397769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 13403854 - 13403798
Alignment:
Q  209 ttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    ||||||||||||| ||| ||||||||  || |||  |||||||||||||||||||||    
T  13403854 ttgacattatggtacttagaataaaatcgcatttgaaataatttcgattaaagtcgc 13403798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 6978050 - 6977910
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||  |||| |||||||||    
T  6978050 gaggaggagcgggaggacatgctattttggtcctcaaccaaaagcaggtgcccaagggactgtcgaggacaacccaattgatttgtgtgatgaggaagat 6977951  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     ||||| |||||||| || ||||  ||||||||||||||||    
T  6977950 gattgagtgtaatgggttctaatatctaattgttttggatc 6977910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 15890963 - 15891098
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||  |||| |||||||||    
T  15890963 gaggaggagcggaaggacatgctattttggtcctcaaccaaaagcaggtgccccagggactgtcga-gacaacccaattgacttgtgtgatgaggaagat 15891061  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttg 158  Q
     |||||||||||||| ||||||||  |||||||||||    
T  15891062 gattgaatgtaatggtttgtaatgtttaattgttttg 15891098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 33404969 - 33404829
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||| ||  |||| |||||||||    
T  33404969 gaggaggagcggtaggacatgctattttggtcctcaaccaaaagtaggtgccccagggactgtcgagggcaacccgattgacttgtgtgaggaggaagat 33404870  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
      ||||||||| ||||||||||| |||||||||||||||||    
T  33404869 gcttgaatgtagtggcttgtaatacctaattgttttggatc 33404829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 5421356 - 5421216
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| ||  |||| |||||||||    
T  5421356 gaggaggagcggcagaacatgctattttggtcctcagccaaaagcaggtgccccagggactctcgaggacaacccaattgacttgtgtgatgaggaagat 5421257  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||| || ||||  | ||||||||||||||    
T  5421256 gattgaatgtaatgggttttaatatccaattgttttggatc 5421216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 34520707 - 34520847
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||||||||||| |||||| ||| |||||| ||||||||| ||  |||| |||||||||    
T  34520707 gaggaggagcgggaggacatgctattttggtcttcagccaaaagcaggtgcccgagggaccgtcgaggacatcccaattgacttgtgtgatgaggaagat 34520806  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
     |||||||||||||  |||||||  |||||| |||||||||    
T  34520807 gattgaatgtaatgagttgtaatatctaattattttggatc 34520847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 17537900 - 17538035
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||| |||||| |||||| ||||  ||||||| |||||||||||||||| ||  |||| |||||||||    
T  17537900 gaggaggagcgggaggacatgctattttggtcctcagccaaaaacaggtgtcccatagactgtcgaggacaacccaattgacttgtgtgatgaggaagat 17537999  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgtttt 157  Q
     |||||||||||||| |||||||  ||| |||||||    
T  17538000 gattgaatgtaatgggttgtaatatctatttgtttt 17538035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 19470612 - 19470748
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||||||| |||||||||   || |||||| ||||| ||  ||||||||||||      
T  19470612 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccctagggactgtagcgggcaacccgattgacttgtgtgacgaggaag-- 19470709  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  19470710 -aatgaatgtaatggcttttaatgcctaattgttttggat 19470748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 16413265 - 16413378
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||| | |||||||||| ||||| ||  ||||||||||||||    
T  16413265 gaggaggagcgggaagacatgttattttggtc-tcaaccaaaagcaggtgctgcagggactggcgaggacaacccgattgacttgtgtgacgaggaagat 16413363  T
Q  122 aattgaatgtaatgg 136  Q
     ||||||||||||||    
T  16413364 gattgaatgtaatgg 16413378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 43492670 - 43492537
Alignment:
Q  25 gaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataat 124  Q
    |||||| ||||||||||| |||||||||||||||||||||  ||||||||||| |||||| | ||||||||| ||||| ||  ||||||||||||   |     
T  43492670 gaggagtgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagtgactgtaacggacaacccgattgacttgtgtgacgaggaag---aa 43492574  T
Q  125 tgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  43492573 tgaatgtaatgacttttaatgcctaattgttttggat 43492537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 28476605 - 28476469
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| |||||||| ||  ||||||||||||      
T  28476605 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccaattgatttgtgtgacgaggaag-- 28476508  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  28476507 -aatgaatgtaatggcttttaatgcctaattgttttggat 28476469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 35492745 - 35492610
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||   || |||||| ||||| ||  ||||||||||||      
T  35492745 gaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgtagtgggcaacccgattgacttgtgtgacgaggaag-- 35492648  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | |||||||||||| || |||||||||||||||||||||    
T  35492647 -aatgaatgtaatgg-ttttaatgcctaattgttttggat 35492610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 24107760 - 24107894
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||| ||||| ||| |||||||||||||| ||||||||||||| || | |||||||  |||||||||||||||| ||  ||||  ||||||||    
T  24107760 gaggaggagcgagaggaaatgctattttggtcctcagccaaaagcaggtgtcctatggactgttgaggacaacccaattgacttgtgtgagaaggaagat 24107859  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttt 156  Q
     |||||||||||||| |||||||  ||||||||||    
T  24107860 gattgaatgtaatgggttgtaatatctaattgttt 24107894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 16583023 - 16582887
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||||||||||||| ||||  |||||||| |||||||||  ||| |||||| ||||| ||  ||||||||||||      
T  16583023 gaggaggagcgggaggacatgctattttggtcctcaacaaaaacaaggtgccctagggactgtagagggcaacccgattgacttgtgtgacgaggaag-- 16582926  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||| ||||||||||||||    
T  16582925 -aatgaatgtaatgacttttaatgcataattgttttggat 16582887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 43983825 - 43983689
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  43983825 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 43983728  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  43983727 -aatgaatgtaatggcttttaatgcctaattgttttggat 43983689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 20989472 - 20989353
Alignment:
Q  26 aggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataatt 125  Q
    |||||||| ||||| ||||||||| ||||||||| ||||||| |||||||| | | |||| |||||||||||  ||| ||||||||||||| |||| |||    
T  20989472 aggagcggaaggacttgttatttttgtcctcaacaaaaagcaagtgccccacgaattgtcgaggacaacccagctgacttaagtgacgagggagatgatt 20989373  T
Q  126 gaatgtaatggcttgtaatg 145  Q
     |||||||||||||||||||    
T  20989372 aaatgtaatggcttgtaatg 20989353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 22002925 - 22002792
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  22002925 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 22002828  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttg 158  Q
     | ||||||||||||||| ||||||||||||||||||    
T  22002827 -aatgaatgtaatggcttttaatgcctaattgttttg 22002792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 2918355 - 2918491
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||| |||||||||| |||||||||||||||||||||  |||||||||| |||||||   || ||||||  |||| ||  ||||||||||||      
T  2918355 gaggaggagcaggaggacatgctattttggtcctcaaccaaaacaaggtgccccatggactgtagtgggcaacccggttgacttgtgtgacgaggaag-- 2918452  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||||||||||||||||||    
T  2918453 -aatgaatgtaatgacttttaatgcctaattgttttggat 2918491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 3936412 - 3936548
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  3936412 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 3936509  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||| ||||||||    
T  3936510 -aatgaatgtaatggcttttaatgcctaattattttggat 3936548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 17425889 - 17425753
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||  ||||||||||||||  |||| || ||||||||||   |||||| ||||| || ||  ||||||||||||      
T  17425889 gaggaggagcgggaggacatgctatttcagtcctcaaccaaaacaaggtaccgcagggactgtagcggacaagccaatcgatttgtgtgacgaggaag-- 17425792  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  17425791 -aatgaatgtaatggcttttaatgcctaattgttttggat 17425753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 41498109 - 41498245
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||   || |||||| ||||| ||  ||||| || |||      
T  41498109 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtgccccagggactgtagcggccaacccgattgacttgtgtgacaagtaag-- 41498206  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||||||||||||||||||    
T  41498207 -aatgaatgtaatgacttttaatgcctaattgttttggat 41498245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 28272621 - 28272741
Alignment:
Q  23 aggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagata 122  Q
    |||||||| || ||||| ||||||||||||||||||| |||||||||||||| | |||||||| | |||||||| ||||| ||||| ||||| | ||||     
T  28272621 aggaggagtggaaggacttgttattttggtcctcaactaaaagcaggtgccctaaggactgtcgatgacaaccc-attgacttaagcgacgaaggagatg 28272719  T
Q  123 attgaatgtaatggcttgtaat 144  Q
    ||| ||||||||| ||||||||    
T  28272720 attaaatgtaatgacttgtaat 28272741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 37311635 - 37311712
Alignment:
Q  25 gaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattga 102  Q
    |||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||| |||||||||| |||||    
T  37311635 gaggagcgggaggacatgctattttgatcctcagccaaaagtaggtgccccagggactgtcgaggacaacccgattga 37311712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 39798976 - 39799112
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  |||| || |||| |||||   |||||| |  ||||| ||  ||||||||||||      
T  39798976 gaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtaccgcaggaactgtagcggacaagcagattgatttgtgtgacgaggaag-- 39799073  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  39799074 -aatgaatgtaatggcttttaatgcctaattgttttggat 39799112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 23408934 - 23408798
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||   |||| ||||||||| |||   || |||||| ||||| ||  |||| |||||||      
T  23408934 gaggaggagcgggaggacatgctattttggtcctcaaccaaatcaaggtaccccagggattgtagcgggcaacccgattgacttgtgtgatgaggaag-- 23408837  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||| ||| |||||||||||| ||||||||    
T  23408836 -aatgaatgtaatgacttttaatgcctaattattttggat 23408798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 18333658 - 18333541
Alignment:
Q  27 ggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataattg 126  Q
    ||||||| || || |||||||||||| | || ||||||| |||||||| | | |||||  |||||||||||||||| ||||| ||||||| |||| |||     
T  18333658 ggagcggaagaacctgttattttggttcgcatccaaaaggaggtgccc-atgaactgttgaggacaacccaattgacttaagcgacgagggagatgatta 18333560  T
Q  127 aatgtaatggcttgtaatg 145  Q
    |||||||||||||||||||    
T  18333559 aatgtaatggcttgtaatg 18333541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 40676409 - 40676545
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| |||||| ||||| || |||||  |||||||||| |||||||    | |||||| ||| | ||  ||||| ||||||      
T  40676409 gaggaggagcgggaggacatgctattttcgtccttaatcaaaacaaggtgccccatggactgtagcaggcaacccgattcacttgtgtgactaggaag-- 40676506  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | ||||||||||||||| |||||||||||||||||||||    
T  40676507 -aatgaatgtaatggcttttaatgcctaattgttttggat 40676545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 33404791 - 33404716
Alignment:
Q  190 acattttgctacattttccttgacattatggtgc-tttgaataaaaat-gcgttttgaataatttcgattaaagtcg 264  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||||||||||||| ||||||||||    
T  33404791 acattttgctacattttccttgaca-tatggtgcttttgaataaaaatcgtgttttgaataatttctattaaagtcg 33404716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 12764592 - 12764508
Alignment:
Q  61 aaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagataattgaatgtaatggcttgtaatg 145  Q
    |||| ||||||||||| | ||| || |||||||||||||||| ||| |||  |||| |||| ||| |||||||||||||||||||    
T  12764592 aaaaacaggtgccccacgaactatcgaggacaacccaattgacttatgtgctgagggagatgattaaatgtaatggcttgtaatg 12764508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 16582858 - 16582793
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  16582858 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 16582793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 40676574 - 40676639
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  40676574 acattttatttgacattatggtacttagaataaaaccgcatttggaataatttcgattaaagtcgc 40676639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 43492508 - 43492443
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||||||||||||||||    
T  43492508 acattttgtttgacattatggtacttagaataaaatcgcatttggaataatttcgattaaagtcgc 43492443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 17538068 - 17538135
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgca 266  Q
    |||||||| ||||||||  |||| |||||||||||   ||||||||||||||||| |||||| |||||    
T  17538068 tacattttgcttgacatattggtactttgaataaattcgcgttttgaataatttcaattaaaatcgca 17538135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 24107922 - 24107989
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgca 266  Q
    |||||||| ||||||||  |||| |||||||||||   ||||||||||||||||| |||||| |||||    
T  24107922 tacattttgcttgacatattggtactttgaataaattcgcgttttgaataatttcaattaaaatcgca 24107989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 3942600 - 3942558
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaa 64  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||    
T  3942600 gaggaggagcgggaggatatgctattttggtcctcaactaaaa 3942558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 23408769 - 23408704
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    |||||||  ||||||||||||| ||| ||||||||  || |||| ||||||||| |||||||||||    
T  23408769 acattttgtttgacattatggtacttagaataaaatcgcattttaaataatttcaattaaagtcgc 23408704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 44298868 - 44298819
Alignment:
Q  61 aaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtg 110  Q
    |||||||||||||||||  | |||| |||||||||||||||| |||||||    
T  44298868 aaaagcaggtgccccagaaattgtcgaggacaacccaattgaattaagtg 44298819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 2918530 - 2918586
Alignment:
Q  209 ttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    ||||||||||||| ||| ||| ||||  || ||| ||||||||||||||||||||||    
T  2918530 ttgacattatggtacttagaacaaaatcgcatttggaataatttcgattaaagtcgc 2918586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 5421202 - 5421142
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaa 260  Q
    ||||||| ||||||||  |||| |||||||||||  |||||||| ||||||||| ||||||    
T  5421202 acattttgcttgacatattggtactttgaataaatttgcgttttaaataatttcaattaaa 5421142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 19470786 - 19470842
Alignment:
Q  209 ttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgc 265  Q
    ||||||||||||| ||| ||||||||  || ||| ||||||||| ||||||||||||    
T  19470786 ttgacattatggtacttagaataaaaccgcatttagaataattttgattaaagtcgc 19470842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 37311793 - 37311853
Alignment:
Q  199 tacattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaa 259  Q
    |||||||| ||||||||  |||| |||||||||||   ||||||||||||||||| |||||    
T  37311793 tacattttacttgacatattggtactttgaataaattcgcgttttgaataatttcaattaa 37311853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 5517 - 5378
Alignment:
Q  23 aggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagata 122  Q
    |||||||| ||||||||||| |||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| ||  |||| |||||||||     
T  5517 aggaggagtgggaggacatgctattttggtcctcagccaaaaccaggtgccccagggactgtcgaggacaacccaattgacttgtgtgatgaggaagatg 5418  T
Q  123 attgaatgtaatggcttgtaatgcctaattgttttggatc 162  Q
    |||||||||| ||| |||||||  ||||||||||||||||    
T  5417 attgaatgtattgggttgtaatatctaattgttttggatc 5378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 1554 - 1415
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||| | ||||| |||||   |||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||  ||||||||||||||    
T  1554 gaggaggagcgggtgaacatgctatttctatcctcaaccaaaagaaggtgcctcagggactgtcgaggacaacccaattgacttgtgtgacgaggaagat 1455  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     ||||||||||||| | | ||||||| |||||||||||||    
T  1454 gattgaatgtaatgacatctaatgccaaattgttttggat 1415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 1394 - 1340
Alignment:
Q  179 atatgtcgcgcacattttgctacattttccttgacattatggtgctttgaataaa 233  Q
    ||||||||||| ||||||| |||||||| ||||||||| |||| |||||||||||    
T  1394 atatgtcgcgcgcattttggtacatttttcttgacattttggtactttgaataaa 1340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 1604 - 1726
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||| ||||| ||||||||| ||||||||| ||||||||||| ||||||||||||  || ||||||||||||  ||||| ||||||| | ||    
T  1604 gaggaggagcggaaggacttgttattttagtcctcaactaaaagcaggtggcccagggactgttgagtacaacccaattgccttaagcgacgagggacat 1703  T
Q  122 aattgaatgtaatggcttgtaat 144  Q
     ||| |||||||| |||||||||    
T  1704 gattaaatgtaatagcttgtaat 1726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 5833 - 5969
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| |||| || ||||||||||   |||||| || ||||| ||  ||||||||||||      
T  5833 gaggaggagcgggaggacatgctatttaggtcctcaaccaaaagaaggtaccgcagggactgtagcggacaagccgattgatttgtgtgacgaggaag-- 5930  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttggat 161  Q
     | |||  |||||||||| |||||||||||||||||||||    
T  5931 -aatgacagtaatggcttttaatgcctaattgttttggat 5969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 4550 - 4684
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||| |||||||||||||| ||||| |||||||||| ||||  |||||||||| |||||||   || |||| | ||||| ||  ||||||||||  ||    
T  4550 gaggagcagcgggaggacatgctatttcggtcctcaacaaaaacaaggtgccccatggactgtagcgggcaactcgattgacttgtgtgacgagga--at 4647  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgttttgg 159  Q
    || ||||||||||||||| |||||||||||||||||||    
T  4648 aa-tgaatgtaatggcttttaatgcctaattgttttgg 4684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 2994 - 2862
Alignment:
Q  22 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgccccagggactgtcaaggacaacccaattgagttaagtgacgaggaagat 121  Q
    |||||||||||||| |||||| |||||||||||||||||||||  ||||||| ||||||||||   ||  ||||| ||||| ||  |||||||||| |      
T  2994 gaggaggagcgggatgacatgctattttggtcctcaaccaaaacaaggtgccacagggactgtagcgggaaacccgattgacttgtgtgacgaggagg-- 2897  T
Q  122 aattgaatgtaatggcttgtaatgcctaattgtttt 157  Q
     | ||||||||||| ||| |||||||||||||||||    
T  2896 -aatgaatgtaatgacttttaatgcctaattgtttt 2862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 17111 - 17177
Alignment:
Q  200 acattttccttgacattatggtgctttgaataaaaatgcgttttgaataatttcgattaaagtcgca 266  Q
    |||||||  ||||||||||||| ||| ||||||||  || ||| ||||||||| |||||||||||||    
T  17111 acattttgtttgacattatggtacttagaataaaatcgcatttggaataattttgattaaagtcgca 17177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University