View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_low_38 (Length: 250)
Name: NF15481_low_38
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_low_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 11019490 - 11019729
Alignment:
| Q |
11 |
caaaggcaacaaatggcaaagtttcttacttgccttttggatggggtccaagactttgtattggacaaaactttggtttattagaagctaaaattgctgt |
110 |
Q |
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| T |
11019490 |
caaaggcaacaaatggcaaagtttcttacttgccttttggatggggtccaagactttgtattggacaaaactttggtttattagaagctaaaattgctgt |
11019589 |
T |
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| Q |
111 |
gtctatgatccttagacaattttctttagagttttcaccttcctatactcatgctccttcctttattattactcttcagcctgagcatggtgcacatctc |
210 |
Q |
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| T |
11019590 |
gtctatgatccttagacaattttctttagagttttcaccttcctatactcatgctccttcctttattattactcttcagcctgagcatggtgcacatctc |
11019689 |
T |
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| Q |
211 |
attttgcataaactttagagtgtattttggttactgtacc |
250 |
Q |
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| T |
11019690 |
attttgcataaactttagagtgtattttggctactgtacc |
11019729 |
T |
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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 15858597 - 15858512
Alignment:
| Q |
13 |
aaggcaacaaatggcaaagtttcttacttgccttttggatggggtccaagactttgtattggacaaaactttggtttattagaagc |
98 |
Q |
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| T |
15858597 |
aaggcaacaaaaggacaagtttcttatttcccttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagc |
15858512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 15865668 - 15865580
Alignment:
| Q |
10 |
gcaaaggcaacaaatggcaaagtttcttacttgccttttggatggggtccaagactttgtattggacaaaactttggtttattagaagc |
98 |
Q |
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| T |
15865668 |
gcaaaggctacaaaaggaaaagtttcttatttcccttttggatggggtcctagaatttgtcttggacaaaactttgccttactagaagc |
15865580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 15851700 - 15851612
Alignment:
| Q |
10 |
gcaaaggcaacaaatggcaaagtttcttacttgccttttggatggggtccaagactttgtattggacaaaactttggtttattagaagc |
98 |
Q |
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| T |
15851700 |
gcaaaggccacaaaaggccaagtttcgtatatcccttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagc |
15851612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 15844462 - 15844377
Alignment:
| Q |
13 |
aaggcaacaaatggcaaagtttcttacttgccttttggatggggtccaagactttgtattggacaaaactttggtttattagaagc |
98 |
Q |
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| T |
15844462 |
aaggcaacaaaaggacaagtttcttatttcccctttggatggggtcctagaatttgtcttggacaaaactttaccttattagaagc |
15844377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 30395810 - 30395878
Alignment:
| Q |
16 |
gcaacaaatggcaaagtttcttacttgccttttggatggggtccaagactttgtattggacaaaacttt |
84 |
Q |
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| T |
30395810 |
gcaacaaatggtagagtttcattttttccatttggatggggtccaagaatttgcattggacaaaacttt |
30395878 |
T |
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