View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15481_low_6 (Length: 471)

Name: NF15481_low_6
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15481_low_6
NF15481_low_6
[»] chr8 (13 HSPs)
chr8 (17-457)||(31272870-31273311)
chr8 (394-457)||(44873910-44873973)
chr8 (397-457)||(9479415-9479475)
chr8 (408-457)||(30774137-30774186)
chr8 (408-457)||(10078316-10078365)
chr8 (397-457)||(33568164-33568224)
chr8 (408-450)||(39077386-39077428)
chr8 (415-456)||(16930901-16930942)
chr8 (408-457)||(26912418-26912467)
chr8 (408-457)||(41624984-41625033)
chr8 (396-457)||(44473747-44473808)
chr8 (397-457)||(28539164-28539224)
chr8 (408-448)||(38498355-38498395)
[»] chr5 (7 HSPs)
chr5 (408-457)||(16994237-16994286)
chr5 (406-457)||(15978812-15978863)
chr5 (408-451)||(38758724-38758767)
chr5 (408-457)||(27365727-27365776)
chr5 (408-457)||(28038302-28038351)
chr5 (408-457)||(33429240-33429289)
chr5 (408-457)||(9741737-9741786)
[»] chr3 (12 HSPs)
chr3 (408-457)||(3283371-3283420)
chr3 (408-457)||(21395960-21396009)
chr3 (408-457)||(8351064-8351113)
chr3 (408-457)||(42092819-42092868)
chr3 (408-456)||(54253895-54253943)
chr3 (408-450)||(54411898-54411940)
chr3 (408-457)||(13700349-13700398)
chr3 (408-457)||(20513130-20513179)
chr3 (408-457)||(34673567-34673616)
chr3 (408-457)||(35711927-35711976)
chr3 (408-457)||(54160400-54160449)
chr3 (408-448)||(50090938-50090978)
[»] chr2 (7 HSPs)
chr2 (408-457)||(10664784-10664833)
chr2 (394-450)||(18924639-18924695)
chr2 (415-457)||(9548303-9548345)
chr2 (415-457)||(21950658-21950700)
chr2 (408-450)||(29471734-29471776)
chr2 (408-457)||(1750011-1750060)
chr2 (394-443)||(4206427-4206476)
[»] chr1 (14 HSPs)
chr1 (408-457)||(14463331-14463380)
chr1 (394-457)||(1838757-1838820)
chr1 (395-457)||(26213795-26213857)
chr1 (408-457)||(5226811-5226860)
chr1 (408-457)||(25671073-25671122)
chr1 (397-450)||(49659892-49659945)
chr1 (397-457)||(25825394-25825454)
chr1 (397-448)||(44720066-44720117)
chr1 (408-450)||(1406721-1406763)
chr1 (415-457)||(43939548-43939590)
chr1 (408-457)||(9005440-9005489)
chr1 (408-457)||(17452992-17453041)
chr1 (408-457)||(41146554-41146603)
chr1 (397-457)||(38509716-38509776)
[»] chr4 (10 HSPs)
chr4 (397-457)||(42434328-42434388)
chr4 (408-457)||(13386995-13387044)
chr4 (408-457)||(32626161-32626210)
chr4 (410-450)||(51682665-51682705)
chr4 (408-450)||(11020454-11020496)
chr4 (408-457)||(5975667-5975716)
chr4 (408-457)||(20835718-20835767)
chr4 (408-457)||(34728319-34728368)
chr4 (408-457)||(38963341-38963390)
chr4 (408-457)||(48860822-48860871)
[»] scaffold0002 (1 HSPs)
scaffold0002 (408-450)||(478321-478363)
[»] scaffold0168 (1 HSPs)
scaffold0168 (408-457)||(35065-35114)
[»] scaffold0093 (1 HSPs)
scaffold0093 (408-457)||(9163-9212)
[»] chr7 (8 HSPs)
chr7 (408-457)||(35983118-35983167)
chr7 (408-457)||(36004530-36004579)
chr7 (408-457)||(45099982-45100031)
chr7 (408-448)||(21993481-21993521)
chr7 (415-457)||(3203386-3203428)
chr7 (408-450)||(3961188-3961230)
chr7 (408-450)||(41378473-41378515)
chr7 (408-448)||(43077597-43077637)
[»] scaffold0004 (1 HSPs)
scaffold0004 (410-457)||(121729-121776)
[»] chr6 (3 HSPs)
chr6 (415-457)||(15081139-15081181)
chr6 (408-457)||(17347142-17347191)
chr6 (421-457)||(18102475-18102511)
[»] scaffold0001 (1 HSPs)
scaffold0001 (408-457)||(392417-392466)


Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Complemental strand, 31273311 - 31272870
Alignment:
Q  17 cataacaaagatagaaggcggttatattaagatttgagaaagagaagaataaatgtccatgtggcaaactcaaacaagtgtaggcattgtatttttgtga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273311 cataacaaagatagaaggcggttatattaagatttgagaaagagaagaataaatgtccatgtggcaaactcaaacaagtgtaggcattgtatttttgtga 31273212  T
Q  117 gcaacgaccgccaaagctttctatatatatacacctctaaatgatgctaacatgcttttcaggcacaaaacattgactcaaaatcaacactgctgttatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273211 gcaacgaccgccaaagctttctatatatatacacctctaaatgatgctaacatgcttttcaggcacaaaacattgactcaaaatcaacactgctgttatt 31273112  T
Q  217 tcccttaaatagaatgcaaaaccaccgttacactctcaaggatttcat-ccccttcttttcatagctttgttacatagtgtcgatttaaaggactagatg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273111 tcccttaaatagaatgcaaaaccaccgttacactctcaaggatttcatcccccttcttttcatagctttgttacatagtgtcgatttaaaggactagatg 31273012  T
Q  316 gaagagacgaagacaacaaagatttacaaactcctttgtatacagatacggaggtaatattacagtatgttttaattttgagttttgttcggagacacat 415  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| ||||||||    
T  31273011 gaagagacgaaggcaaaaaagatttacaaactcctttgtatacagatacggaggtaatattacagtatgttttaatttttggttttattcgaagacacat 31272912  T
Q  416 tttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||| | ||| ||||||||||||||||||    
T  31272911 tttatgaaggtgttttttaacaaattattctatgagtatttg 31272870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 394 - 457
Target Start/End: Original strand, 44873910 - 44873973
Alignment:
Q  394 tgagttttgttcggagacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||| | |||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  44873910 tgagttttgttagaagacaccttttatgaaggtgttttttagcaagttattctatgagcatttg 44873973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 457
Target Start/End: Original strand, 9479415 - 9479475
Alignment:
Q  397 gttttgttcggagacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||| | ||||||||||||||||||||| ||| |||||||||||||||||| |||||    
T  9479415 gttttgttagaagacacattttatgaaggtgtcttttagcaagttattctatgagcatttg 9479475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 30774137 - 30774186
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  30774137 agacaccttttatgaaggtgttttttagcaagttattctatgagcatttg 30774186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 10078316 - 10078365
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| |||||||||||||||||| |||||    
T  10078316 agacaccttttatgaaggtgtcttttagcaagttattctatgagcatttg 10078365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 457
Target Start/End: Complemental strand, 33568224 - 33568164
Alignment:
Q  397 gttttgttcggagacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||| | ||||||||||||| ||||||| ||| | |||||||||||||||| |||||    
T  33568224 gttttgttagaagacacattttataaaggtgtcttttatcaagttattctatgagcatttg 33568164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 450
Target Start/End: Complemental strand, 39077428 - 39077386
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatga 450  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  39077428 agacaccttttatgaaggtgtcttttagcaagttattctatga 39077386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 16930942 - 16930901
Alignment:
Q  415 ttttatgaaggtgtttttgagcaagttattctatgagtattt 456  Q
    |||||||||||||| ||| |||||||||||||||||| ||||    
T  16930942 ttttatgaaggtgtcttttagcaagttattctatgagcattt 16930901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 26912467 - 26912418
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||||||||||| |||| ||| | |||||||||||||||| |||||    
T  26912467 agacacattttatgaatgtgtcttttaacaagttattctatgagcatttg 26912418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 41625033 - 41624984
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||||||| |||| ||||||| |||||||||||| ||||| |||||    
T  41625033 agacacattttaagaagatgttttttagcaagttattcaatgagcatttg 41624984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 44473747 - 44473808
Alignment:
Q  396 agttttgttcggagacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||| | |||||  ||| |||||||||| ||| ||||||||||| ||||||||||||    
T  44473747 agttttgttagaagacatctttcatgaaggtgtcttttagcaagttattgtatgagtatttg 44473808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 457
Target Start/End: Original strand, 28539164 - 28539224
Alignment:
Q  397 gttttgttcggagacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||| | ||||||||||||||||  ||| ||| ||||||||||| |||||| |||||    
T  28539164 gttttgttagaagacacattttatgaatatgtcttttagcaagttattttatgagcatttg 28539224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 448
Target Start/End: Complemental strand, 38498395 - 38498355
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctat 448  Q
    |||||| |||||||||||||| ||| |||||||||||||||    
T  38498395 agacaccttttatgaaggtgtcttttagcaagttattctat 38498355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 16994286 - 16994237
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||||||||||||||||| || |||||||||||||||||| |||||    
T  16994286 agacacattttatgaaggtgttgtttagcaagttattctatgagcatttg 16994237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 406 - 457
Target Start/End: Original strand, 15978812 - 15978863
Alignment:
Q  406 ggagacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||    
T  15978812 ggagacacattttatgaaggtgtcttttagcaaattaatctatgagtatttg 15978863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 38758767 - 38758724
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgag 451  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||    
T  38758767 agacacattttatgaaggtgtcttttagcaagttattctatgag 38758724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 27365727 - 27365776
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| |||||||||||||||||| |||||    
T  27365727 agacaccttttatgaaggtgtcttttagcaagttattctatgagcatttg 27365776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 28038351 - 28038302
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||||||||||| |||| ||| |||||||||||||||||| |||||    
T  28038351 agacacattttatgaaagtgtcttttagcaagttattctatgagcatttg 28038302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 33429289 - 33429240
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||||||  ||| |||||||||||||||||| |||||    
T  33429289 agacacattttatgaaggtgccttttagcaagttattctatgagcatttg 33429240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 9741737 - 9741786
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||||||| ||| | ||| |||||||||||| |||||    
T  9741737 agacacattttatgaaggtgtcttttaacaaattattctatgagcatttg 9741786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 3283420 - 3283371
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||||||| ||| |||||||||||||||||| |||||    
T  3283420 agacacattttatgaaggtgtcttttagcaagttattctatgagcatttg 3283371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 21396009 - 21395960
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  21396009 agacaccttttatgaaggtgttttttagcaagttattctatgagcatttg 21395960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 8351064 - 8351113
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| |||||||||||||||||| |||||    
T  8351064 agacactttttatgaaggtgtcttttagcaagttattctatgagcatttg 8351113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 42092819 - 42092868
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||| ||||    
T  42092819 agacaccttttatgaaggtgtcttttagcaagttattctatgagtctttg 42092868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 54253943 - 54253895
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtattt 456  Q
    |||| |||||||||||||||| ||| |||||||||||||||||| ||||    
T  54253943 agacgcattttatgaaggtgtattttagcaagttattctatgagcattt 54253895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 450
Target Start/End: Complemental strand, 54411940 - 54411898
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatga 450  Q
    |||||| |||||||||||||||||| |||||| ||||||||||    
T  54411940 agacaccttttatgaaggtgttttttagcaagatattctatga 54411898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 13700398 - 13700349
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||||||||||| |  |||||||||| |||| |||||    
T  13700398 agacacattttatgaaggtgttttttaataagttattctttgagcatttg 13700349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 20513179 - 20513130
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| ||||| |||||||||||| |||||    
T  20513179 agacactttttatgaaggtgtcttttagcaatttattctatgagcatttg 20513130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 34673616 - 34673567
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| ||||||||||| ||| ||||||||    
T  34673616 agacaccttttatgaaggtgtcttttagcaagttattatattagtatttg 34673567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 35711976 - 35711927
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||||||| || ||||| ||| |||||||||||||||||| |||||    
T  35711976 agacacattttacgagggtgtcttttagcaagttattctatgagcatttg 35711927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 54160400 - 54160449
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| ||||||||||||||| || |||||    
T  54160400 agacaccttttatgaaggtgtcttttagcaagttattctataagcatttg 54160449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 448
Target Start/End: Complemental strand, 50090978 - 50090938
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctat 448  Q
    |||||| |||||||||||||| ||| |||||||||||||||    
T  50090978 agacaccttttatgaaggtgtcttttagcaagttattctat 50090938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 10664833 - 10664784
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||||||| ||| |||||||||||||||||| |||||    
T  10664833 agacacattttatgaaggtgtcttttagcaagttattctatgagcatttg 10664784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 18924695 - 18924639
Alignment:
Q  394 tgagttttgttcggagacacattttatgaaggtgtttttgagcaagttattctatga 450  Q
    ||||||||| | | |||||| |||||||||||||| ||| |||||||||||||||||    
T  18924695 tgagttttgctagaagacaccttttatgaaggtgtcttttagcaagttattctatga 18924639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 457
Target Start/End: Complemental strand, 9548345 - 9548303
Alignment:
Q  415 ttttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||||||||| ||| |||||||||||||||||| |||||    
T  9548345 ttttatgaaggtgtcttttagcaagttattctatgagcatttg 9548303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 457
Target Start/End: Original strand, 21950658 - 21950700
Alignment:
Q  415 ttttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||||||||| ||| |||||||||||||||||| |||||    
T  21950658 ttttatgaaggtgtcttttagcaagttattctatgagcatttg 21950700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 450
Target Start/End: Complemental strand, 29471776 - 29471734
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatga 450  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  29471776 agacaccttttatgaaggtgtcttttagcaagttattctatga 29471734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 1750060 - 1750011
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||||||| ||| |||| |||||||||| || |||||    
T  1750060 agacacattttatgaaggtgtcttttagcaggttattctattagcatttg 1750011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 4206427 - 4206476
Alignment:
Q  394 tgagttttgttcggagacacattttatgaaggtgtttttgagcaagttat 443  Q
    ||||||||| | | ||||||||||||||||||||| ||| ||||||||||    
T  4206427 tgagttttgctagaagacacattttatgaaggtgtcttttagcaagttat 4206476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 14463331 - 14463380
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  14463331 agacaccttttatgaaggtgttttttagcaagttattctatgagcatttg 14463380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 394 - 457
Target Start/End: Complemental strand, 1838820 - 1838757
Alignment:
Q  394 tgagttttgttcggagacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||| | |||||||||||||||| |||| ||| || ||||||||||||||| |||||    
T  1838820 tgagttttgttagaagacacattttatgaaagtgtcttttagtaagttattctatgagcatttg 1838757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 457
Target Start/End: Complemental strand, 26213857 - 26213795
Alignment:
Q  395 gagttttgttcggagacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||| | | |||||||||||| |||||||| ||| |||||||||||||||||| |||||    
T  26213857 gagttttgctagaagacacattttacgaaggtgtcttttagcaagttattctatgagcatttg 26213795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 5226811 - 5226860
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||||||| ||| | ||||||||| ||||||||||||    
T  5226811 agacacattttatgaaggtgtcttttaacaagttattatatgagtatttg 5226860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 25671122 - 25671073
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||| ||||||||||||||| ||| |||||||||||||||||| |||||    
T  25671122 agacatattttatgaaggtgtcttttagcaagttattctatgagcatttg 25671073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 450
Target Start/End: Original strand, 49659892 - 49659945
Alignment:
Q  397 gttttgttcggagacacattttatgaaggtgtttttgagcaagttattctatga 450  Q
    |||||||| | |||||| ||| |||||||||||||| |||||||||||||||||    
T  49659892 gttttgttagaagacacctttcatgaaggtgttttttagcaagttattctatga 49659945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 457
Target Start/End: Complemental strand, 25825454 - 25825394
Alignment:
Q  397 gttttgttcggagacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||| | |||||| |||||||||||||| ||| ||||||||||| |||||| |||||    
T  25825454 gttttgttagaagacaccttttatgaaggtgtcttttagcaagttattttatgagcatttg 25825394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 448
Target Start/End: Original strand, 44720066 - 44720117
Alignment:
Q  397 gttttgttcggagacacattttatgaaggtgtttttgagcaagttattctat 448  Q
    |||||||| | |||||| |||||||||||||| ||| |||||||||||||||    
T  44720066 gttttgttagaagacaccttttatgaaggtgtcttttagcaagttattctat 44720117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 450
Target Start/End: Original strand, 1406721 - 1406763
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatga 450  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||    
T  1406721 agacacattttatgaaggtgtcttttagcaaattattctatga 1406763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 457
Target Start/End: Complemental strand, 43939590 - 43939548
Alignment:
Q  415 ttttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||||||||| ||| |||||||||||||||||| |||||    
T  43939590 ttttatgaaggtgtcttttagcaagttattctatgagcatttg 43939548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 9005440 - 9005489
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| ||||||||||||||| || |||||    
T  9005440 agacaccttttatgaaggtgtcttttagcaagttattctatcagcatttg 9005489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 17453041 - 17452992
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| |||||| ||||||||||| |||||    
T  17453041 agacactttttatgaaggtgtcttttagcaagctattctatgagcatttg 17452992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 41146554 - 41146603
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| ||||||||| |||||||| | |||||||||||||||| |||||    
T  41146554 agacactttttatgaaagtgttttttaccaagttattctatgagcatttg 41146603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 457
Target Start/End: Complemental strand, 38509776 - 38509716
Alignment:
Q  397 gttttgttcggagacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||| | ||||||||||||||||||||| ||| ||||| |||| |||| || |||||    
T  38509776 gttttgttagaagacacattttatgaaggtgtcttttagcaaattatcctataagcatttg 38509716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 457
Target Start/End: Complemental strand, 42434388 - 42434328
Alignment:
Q  397 gttttgttcggagacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||| | |||||| ||||| |||||||||||| |||||||||||||||||| |||||    
T  42434388 gttttgttagaagacaccttttaggaaggtgttttttagcaagttattctatgagcatttg 42434328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 13386995 - 13387044
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||| ||||||| ||| |||||||||||||||||| |||||    
T  13386995 agacacattttataaaggtgtcttttagcaagttattctatgagcatttg 13387044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 32626210 - 32626161
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| |||||||||||||||||| |||||    
T  32626210 agacaccttttatgaaggtgtcttttagcaagttattctatgagcatttg 32626161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 51682705 - 51682665
Alignment:
Q  410 acacattttatgaaggtgtttttgagcaagttattctatga 450  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  51682705 acaccttttatgaaggtgttttttagcaagttattctatga 51682665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 450
Target Start/End: Complemental strand, 11020496 - 11020454
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatga 450  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  11020496 agacaccttttatgaaggtgtgttttagcaagttattctatga 11020454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 5975667 - 5975716
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| || |||||    
T  5975667 agacacattttatgaaggtgtcttttagcaagttattatattagcatttg 5975716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 20835718 - 20835767
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| ||||||||||||||| || |||||    
T  20835718 agacaccttttatgaaggtgtcttttagcaagttattctattagcatttg 20835767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 34728368 - 34728319
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| ||||||||||||||| || |||||    
T  34728368 agacaccttttatgaaggtgtcttttagcaagttattctataagcatttg 34728319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 38963390 - 38963341
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| ||||||||| |||| ||| |||||||||||||||||| |||||    
T  38963390 agacaccttttatgaatgtgtcttttagcaagttattctatgagcatttg 38963341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 48860871 - 48860822
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||| ||||||| ||| |||||||||||||||||| |||||    
T  48860871 agacaccttttataaaggtgtcttttagcaagttattctatgagcatttg 48860822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 450
Target Start/End: Original strand, 478321 - 478363
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatga 450  Q
    |||||| |||||||||||||||||| |||||||||||||||||    
T  478321 agacactttttatgaaggtgttttttagcaagttattctatga 478363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 35065 - 35114
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| |||||||||||||||||| |||||    
T  35065 agacaccttttatgaaggtgtcttttagcaagttattctatgagcatttg 35114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 9163 - 9212
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||||||| ||| |||||||||||||||||| |||||    
T  9163 agacaccttttatgaaggtgtattttagcaagttattctatgagcatttg 9212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 35983118 - 35983167
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||| |||||    
T  35983118 agacacattttatgaagatgtcttttagcaagttattctatgagcatttg 35983167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 36004530 - 36004579
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||| |||||    
T  36004530 agacacattttatgaagatgtcttttagcaagttattctatgagcatttg 36004579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 45099982 - 45100031
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||||||||||| | |||||||||| ||||| |||||    
T  45099982 agacacattttatgaaggtgttttttaacaagttattcaatgagcatttg 45100031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 448
Target Start/End: Original strand, 21993481 - 21993521
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctat 448  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  21993481 agacacattttatgaaggtgtcttttagcaagttattctat 21993521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 457
Target Start/End: Complemental strand, 3203428 - 3203386
Alignment:
Q  415 ttttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||||||||| ||| |||||||||||||||||| |||||    
T  3203428 ttttatgaaggtgtcttttagcaagttattctatgagcatttg 3203386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 450
Target Start/End: Original strand, 3961188 - 3961230
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatga 450  Q
    |||||||||||||||| |||| ||| |||||||||||||||||    
T  3961188 agacacattttatgaaagtgtcttttagcaagttattctatga 3961230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 450
Target Start/End: Complemental strand, 41378515 - 41378473
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatga 450  Q
    |||||| |||||| ||||||||||| |||||||||||||||||    
T  41378515 agacactttttattaaggtgttttttagcaagttattctatga 41378473  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 448
Target Start/End: Complemental strand, 43077637 - 43077597
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctat 448  Q
    |||||| |||||||||||||||||| |||||||| ||||||    
T  43077637 agacaccttttatgaaggtgttttttagcaagtttttctat 43077597  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 121776 - 121729
Alignment:
Q  410 acacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||||| ||| | |||||||||||||||| |||||    
T  121776 acacattttatgaaggtgtcttttaacaagttattctatgagcatttg 121729  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 457
Target Start/End: Original strand, 15081139 - 15081181
Alignment:
Q  415 ttttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||||||||| ||| |||||||||||||||||| |||||    
T  15081139 ttttatgaaggtgtcttttagcaagttattctatgagcatttg 15081181  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 17347191 - 17347142
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| || |||||    
T  17347191 agacacattttatgaaggtgtcttttagcaagttattatattagcatttg 17347142  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 18102475 - 18102511
Alignment:
Q  421 gaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||||||||| |||||||||||||||||| |||||    
T  18102475 gaaggtgttttttagcaagttattctatgagcatttg 18102511  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 392417 - 392466
Alignment:
Q  408 agacacattttatgaaggtgtttttgagcaagttattctatgagtatttg 457  Q
    |||||| |||||||||| ||| ||| |||||||||||||||||| |||||    
T  392417 agacaccttttatgaagatgtcttttagcaagttattctatgagcatttg 392466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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