View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_low_8 (Length: 447)
Name: NF15481_low_8
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 217 - 431
Target Start/End: Complemental strand, 8133107 - 8132890
Alignment:
| Q |
217 |
tctactcataatttgaatcagaataacgtatactgcaacaaaaggcagaatattaca-----attcaattaaatccacaaaacatgtacacaatgtgaca |
311 |
Q |
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| T |
8133107 |
tctactcataatttgaatcagaataacgtatactgcaacaaaaggcagaatattacatactaattcaattaaatccacaaaacatgtacagaatgtgaca |
8133008 |
T |
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| Q |
312 |
tgactcagatacgaacaccaaacacctaatataatagacacgtcaataccgataatcaagtgtgtcggtgttgtgtgtcagacacatgtcgaacacaaga |
411 |
Q |
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| T |
8133007 |
tgactcagatacgaacaccaaacaccgaatataatagacacgtcaatactgataatcaagtgtgtcagtgt--tgtgtcagacacatgtcgaacacaaga |
8132910 |
T |
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| Q |
412 |
gacataaattgtttgaaaga |
431 |
Q |
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| T |
8132909 |
gacataaattgtttgaaaga |
8132890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8133323 - 8133216
Alignment:
| Q |
1 |
catagatatattacaagtttctgcttagtgaataagttgccattctcattgatcataaaaatctctagagtctaacatgtgaattttcttcttcattcat |
100 |
Q |
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| T |
8133323 |
catagatatattacaagtttctgcttagtgaataagttgccattctcattgatcataaaaatctctagagtctaacatgtgaattttcttcttcattctt |
8133224 |
T |
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| Q |
101 |
cactgcag |
108 |
Q |
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|||||||| |
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| T |
8133223 |
cactgcag |
8133216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 8151262 - 8151172
Alignment:
| Q |
4 |
agatatattacaagtttctgcttagtgaataag--ttgccattctcattgatcataaaaatctctagagtctaacatgtgaattttcttct |
92 |
Q |
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| T |
8151262 |
agatatattacaagtttttgctttgcgaataagaattgacattctcattgatcatgaaaatctctaaagtctgagatgtgaattttcttct |
8151172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 2806809 - 2806762
Alignment:
| Q |
221 |
ctcataatttgaatcagaataacgtatactgcaacaaaaggcagaatat |
269 |
Q |
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| T |
2806809 |
ctcataatttgaatcagaatagcgtatactgcaac-aaaggcagaatat |
2806762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 2806938 - 2806877
Alignment:
| Q |
41 |
cattctcattgatcataaaaatctctagagtctaacatgtgaattttcttcttcattcatcac |
103 |
Q |
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| T |
2806938 |
cattctcattgattataaaaatctctgaagtctgacatgtgaaattt-ttcttaattcatcac |
2806877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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