View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15481_low_9 (Length: 443)
Name: NF15481_low_9
Description: NF15481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15481_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 77 - 436
Target Start/End: Original strand, 36990405 - 36990764
Alignment:
| Q |
77 |
tttaacttacatattcacctggctaagagagtttcttattaattgatttatttactatatgcagaagagacagcttcattacccacagagcattctgtga |
176 |
Q |
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| T |
36990405 |
tttaacttacat--tcacctggcta-gagagtttcttattaattgatttatttactatatgcagaagagacagcttcattacccacagagcattctgtga |
36990501 |
T |
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| Q |
177 |
cgcattagctgaagagaacaacaaagccaacgaaggagtactatcaaacttgcaacaccaaccaatctcaaatctcgtttcttcattacctttaaacccc |
276 |
Q |
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| T |
36990502 |
cgcattggctgaagagaacaacaaagccaacgaaggagtactatcaaacttgcaacaccaaccaatctcaaatctcgtttcttcattacctttaaacccc |
36990601 |
T |
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| Q |
277 |
attaataaccctcaaattggtggaactgtatcagaattcaacaaccattcagatcacaagctcccattatcatcccctcatgaactcatgtc---gtctg |
373 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36990602 |
attaataaccctcaaatttgtggaactgtatcagaattcaacaaccattcagatcacaagctcccattatcatcccctcatgaactcatgtccatgtctg |
36990701 |
T |
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| Q |
374 |
tgccaccaaaacccttcaataacaacatattcactagaagcctttcatcatcaacttcatctc |
436 |
Q |
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| T |
36990702 |
tgccaccaaaacccttcaataacaacatattcactagaagcctttcatcatcaacttcatctc |
36990764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 36990375 - 36990408
Alignment:
| Q |
17 |
ctcatgtcatgaacaattatatatttcatattta |
50 |
Q |
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| T |
36990375 |
ctcatgtcatgagcaattatatatttcatattta |
36990408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 44150204 - 44150142
Alignment:
| Q |
137 |
gcagaagagacagcttcattacccacagagcattctgtgacgcattagctgaagagaacaaca |
199 |
Q |
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| T |
44150204 |
gcaggagagacagttttataacccacagagcattctgtgatgcattaactgaagaaaacaaca |
44150142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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