View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15482_high_1 (Length: 419)
Name: NF15482_high_1
Description: NF15482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15482_high_1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 419
Target Start/End: Complemental strand, 35697210 - 35696800
Alignment:
| Q |
9 |
gatcataaccctgcggtatatctttctgtctcccccggcccttcttcgtttccaacatccccccgccattgtccttctccggcggccatttctcaaacat |
108 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| || ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35697210 |
gatcataaacctgcggtatatctatctgtctccaccggtccatcttcgtgttcaacatctccccgccattgtccttctccggcggccatttctcaaacat |
35697111 |
T |
|
| Q |
109 |
tgaattattcaccgtctttcttggcacgtgcaatggcaacggatacaatcctttcgctatcgcggcagccaccacagacggtgaaggtccaacatccgaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35697110 |
tgaattattcaccgtctttcttggcacgtgcaatggcaacggatacaatcctttcgctatcgcggcagccaccacagacggtgaaggtccaacatccgaa |
35697011 |
T |
|
| Q |
209 |
cacaacgatccattcgcgttcacgatcacacctttcttcccagtaggaacactaatttcagactcacattcaccaccgtaaccgttttttccattaggat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35697010 |
cacaacgatccattcgcgttcacgatcacacctttcttcccagtaggaacactaatttcagactcacattcaccaccgtaaccgttttttccattaggat |
35696911 |
T |
|
| Q |
309 |
tataaacataatcattaatcgtcgaatcannnnnnncgctttgtgatcgttgaagcgtcatcatatgcttggcatcacaattactgttattgtcatagtt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35696910 |
tataaacataatcattaatcgtcgaatcatttttttcgctttgtgatcgttgaagcgtcatcatatgcttggcatcacaattactgttattgtcatagtt |
35696811 |
T |
|
| Q |
409 |
ttgattctgtt |
419 |
Q |
| |
|
||||||||||| |
|
|
| T |
35696810 |
ttgattctgtt |
35696800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University