View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15482_high_4 (Length: 236)
Name: NF15482_high_4
Description: NF15482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15482_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 4368767 - 4368981
Alignment:
| Q |
6 |
tcttcatctccattagcattttcatcatgcaaatcagcaattcccgcatcagctagacattgcacagacatgttacatccaaatctgagtcgtccacatt |
105 |
Q |
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| T |
4368767 |
tcttcatctccattagcattttcatcatgcaaatcagcaattcccgcatcagcttgacattgta--gacatggtacatccaaatctgagtcgtccacatt |
4368864 |
T |
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| Q |
106 |
taaaccttcaacgtctccattatcatcaatatttagctcagctgacgttctcttcttttcagccaattttgaattagtcatgacaaaaagaacatcacga |
205 |
Q |
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| T |
4368865 |
taaaccttcaacgtctccattatcatcaatatttagctcagctgacgttctcttcttttcggccaattttgaattagccatgacaaaaagaacatcacga |
4368964 |
T |
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| Q |
206 |
tcagttctgtacatcat |
222 |
Q |
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| T |
4368965 |
tcagttctgtacatcat |
4368981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 4364357 - 4364570
Alignment:
| Q |
2 |
tccgtcttcatctccattagcattttcatcatgcaaatcagcaattcccgcatcagctagacattgcacagacatgttacatccaaatctgagtcgtcca |
101 |
Q |
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| T |
4364357 |
tccgtcttcatctccgtacccatttacatcatgcaaatcagcaattcccgcatcagctagacacttca--gacatggtgtatccaaatccgaggcttcca |
4364454 |
T |
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| Q |
102 |
catttaaaccttcaacgtctccattatcatcaatatttagctcagctgacgttctcttcttttcagccaattttgaattagtcatgacaaaaagaacatc |
201 |
Q |
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| T |
4364455 |
catttaaaccttcaacgtctccattatcatcaatatttagctcagctgaggttctcttcttttcggccaattttgaattagccatgacaaaaagaacatc |
4364554 |
T |
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| Q |
202 |
acgatcagttctgtac |
217 |
Q |
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| T |
4364555 |
atgatcagttctgtac |
4364570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 4358990 - 4359169
Alignment:
| Q |
22 |
cattttcatcatgcaaatcagcaattcccgcatcagctagacattgcacagacatgttacatccaaatctgagtcgtccacatttaaaccttcaacgtct |
121 |
Q |
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|||||| |||||||| ||| ||||| |||||||||||||||| | || |||||| | |||||| || ||| |||| |||| || | ||||||| | | |
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| T |
4358990 |
catttttatcatgcatatccgcaatcgccgcatcagctagacacttca--gacatggtgtatccaagtccgaggcgtctacatctagaacttcaacattt |
4359087 |
T |
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| Q |
122 |
ccattatcatcaatatttagctcagctgacgttctcttcttttcagccaattttgaattagtcatgacaaaaagaacatcac |
203 |
Q |
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| T |
4359088 |
ccattgtcatcaagatttagctcacttgacgctctcttcttttcggccaattttgaattagccatgacaaaaacaacatcac |
4359169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 5726938 - 5726746
Alignment:
| Q |
6 |
tcttcatctccattagcattttcatcatgcaaatcagcaattcccgcatcagctagacattgcacagacatgttacatccaaatctgagtcgtccacatt |
105 |
Q |
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||||||||||||||||||||||||||||||||| || |||| ||| ||||| || || | || |||||| || | ||||||| |||| |||||| |
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| T |
5726938 |
tcttcatctccattagcattttcatcatgcaaaccatcaatccccacatcatcttgaggcttca--gacatggtataatcaaatctaagtcccccacatc |
5726841 |
T |
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| Q |
106 |
taaaccttcaacgtctccattatcatcaatatttagctcagctgacgttctcttcttttcagccaattttgaattagtcatgacaaaaagaacat |
200 |
Q |
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|||| | ||||||||||||||||| |||| |||||||| | ||| | || ||||||||| | | |||||||||||| ||||||||||||||||| |
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| T |
5726840 |
taaagcatcaacgtctccattatcgtcaagatttagctgaattgaggatcgcttcttttcggtccattttgaattagccatgacaaaaagaacat |
5726746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 3596113 - 3596069
Alignment:
| Q |
158 |
ttcttttcagccaattttgaattagtcatgacaaaaagaacatca |
202 |
Q |
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| T |
3596113 |
ttctcttcagccaattttgaattagccatgacaaagacaacatca |
3596069 |
T |
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