View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15482_low_3 (Length: 369)
Name: NF15482_low_3
Description: NF15482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15482_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 39614350 - 39614047
Alignment:
| Q |
2 |
cagtcttatgcttcaagcaaagaattcaaatacacataacaaaaaatcagcacacattaaagatttagagcacggataaaaaagaaacaaaacaatacaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39614350 |
cagtcttatgcttcaagcaaagaattcaaatacacataa-aaaaacccaatacacattaaagatttagagcacggataaaaaagaaacaaaacaatacaa |
39614252 |
T |
|
| Q |
102 |
ttaaacaacacccatacaatcaaaggggatgctgccaccaaccaacaaactcaagagaaacatttgcgaccttatgcttcagccaccacaaaaacaaata |
201 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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|
| T |
39614251 |
ttaaacaacacccagacaatcaaagggggcgctgccaccaaccagcaaactcaagagaaacatttgcgaccttatgcttcagccaccacaaagataaata |
39614152 |
T |
|
| Q |
202 |
tttaaccttatcaagcagttgagacatcaatttctccgtatggttaaaaaccctgtcatttcactcttgccagataactcacacacatataaaccaaatt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
39614151 |
tttaaccttatcaagcagttgagacatcaatttctccgtatgattaaaaaccctgtcatttcgctcttgccatataactcacacacatgtaaaccaaatt |
39614052 |
T |
|
| Q |
302 |
aaatg |
306 |
Q |
| |
|
||||| |
|
|
| T |
39614051 |
aaatg |
39614047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 39614492 - 39614336
Alignment:
| Q |
20 |
aaagaattcaaatacacataacaaaaaatcagcacacattaaagatttagagcacggataaaaaagaaacaaaacaatacaattaaacaacacccataca |
119 |
Q |
| |
|
||||| |||||||||| | ||||||||| || ||| |||||| |||| ||||||| ||||||||| ||||||||||||||||| ||||| | ||| |
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|
| T |
39614492 |
aaagagttcaaatacataaaacaaaaaaccaacacccattaatgatt-agagcactgataaaaaa----caaaacaatacaattaattaacactctgaca |
39614398 |
T |
|
| Q |
120 |
atcaaaggggatgctgccaccaaccaacaaactcaagagaaacatttgcgaccttatgcttca |
182 |
Q |
| |
|
||||||| || | ||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
39614397 |
atcaaagaggc-gttgccaccgaccaacaaactcaagagaaacatttgcagtcttatgcttca |
39614336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 27984349 - 27984439
Alignment:
| Q |
128 |
ggatgctgccaccaaccaacaaactcaagagaaacatttgcgaccttatgcttcagccaccacaaaaacaaatatttaaccttatcaagca |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||| ||| | ||||||||||||||| | ||| ||| |||||| |||||||| |||| |
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|
| T |
27984349 |
ggatgctgccaccaaccagcaaactcaaaagatacaaatgcagcattatgcttcagccacgagaaagacacatatttgaccttatcgagca |
27984439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 76 - 303
Target Start/End: Original strand, 4110946 - 4111173
Alignment:
| Q |
76 |
gataaaaaagaaacaaaacaatacaattaaacaacacccatacaatcaaaggggatgctgccaccaaccaacaaactcaagagaaacatttgcgacctta |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | |||| ||||||||| ||| || ||||||||||||||||||||||||||||||||| | | ||| |
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|
| T |
4110946 |
gataaaaaagaaacaaaacaatacaattaaccaccgcccaaacaatcaaaaggg-tgttgccaccaaccaacaaactcaagagaaacattttcagcatta |
4111044 |
T |
|
| Q |
176 |
tgcttcagccaccacaaaaacaaatatttaaccttatcaagcagttgagacatcaatttctccgtatggttaaaaa-ccctgtcatttcactcttgccag |
274 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| | ||| | ||| ||| || |||||| |||| ||||||| |||| ||||||||||||||||| |
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|
| T |
4111045 |
tgcttcacccaccacaaagacaaatatttaaccttgttaagaaactgatgcataaacttctccttatgattaaaaacccctatcatttcactcttgccaa |
4111144 |
T |
|
| Q |
275 |
ataactcacacacatataaaccaaattaa |
303 |
Q |
| |
|
||||| |||||||| ||||||||||||| |
|
|
| T |
4111145 |
ataacccacacacaagtaaaccaaattaa |
4111173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 93 - 303
Target Start/End: Original strand, 9371700 - 9371909
Alignment:
| Q |
93 |
acaatacaattaaacaacacccatacaatcaaaggggatgctgccaccaaccaacaaactcaagagaaacatttgcgaccttatgcttcagccaccacaa |
192 |
Q |
| |
|
|||| ||||||| |||||| || ||||||||||||| |||||||||||| || ||||||||| ||||||||||||| ||||||||||||| ||||||| |
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|
| T |
9371700 |
acaacacaattatccaacacacagacaatcaaagggg-tgctgccaccaagcagcaaactcaatagaaacatttgcggtcttatgcttcagcaaccacaa |
9371798 |
T |
|
| Q |
193 |
aaacaaatatttaaccttatcaagcagttgagacatcaatttctccgtatggttaaaaaccctgtcatttcactcttgccagataactcacacacatata |
292 |
Q |
| |
|
| ||||||||||||| |||| ||||| |||| ||||| ||| ||| |||| |||||| | ||||||| ||||| |||||||| |||||| | || |
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|
| T |
9371799 |
agacaaatatttaactttattaagcaattgatgcatcattttatccttatgattaaaagctaggtcattttggtcttgtcagataacccacacataggta |
9371898 |
T |
|
| Q |
293 |
aaccaaattaa |
303 |
Q |
| |
|
||||||||||| |
|
|
| T |
9371899 |
aaccaaattaa |
9371909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 11096866 - 11096762
Alignment:
| Q |
199 |
atatttaaccttatcaagcagttgagacatcaatttctccgtatggttaaaaaccctgtcatttcactcttgccagataactcacacacatataaaccaa |
298 |
Q |
| |
|
||||||||||||||||| || | || |||| | | |||| |||| ||||||||| ||||||||| ||||| | |||| || |||||||| |||| ||| |
|
|
| T |
11096866 |
atatttaaccttatcaaacaactaaggcatcgaatactccttatgattaaaaaccttgtcatttcgctcttactagatgacccacacacaggtaaagcaa |
11096767 |
T |
|
| Q |
299 |
attaa |
303 |
Q |
| |
|
||||| |
|
|
| T |
11096766 |
attaa |
11096762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 132 - 286
Target Start/End: Original strand, 28453433 - 28453587
Alignment:
| Q |
132 |
gctgccaccaaccaacaaactcaagagaaacatttgcgaccttatgcttcagccaccacaaaaacaaatatttaaccttatcaagcagttgagacatcaa |
231 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| | |||| |||| | |
|
|
| T |
28453433 |
gctgccaccgaccatcaaacttaagagaaacatttccagccttatgcttcagccaccacaaagacaaatatttaaccttatcaagtaactgaggcatcga |
28453532 |
T |
|
| Q |
232 |
tttctccgtatggttaaaaaccctgtcatttcactcttgccagataactcacaca |
286 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
28453533 |
cttctcctaatgattaaaaaccatgtcatttcactcttgtcagataacccacaca |
28453587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 17401244 - 17401042
Alignment:
| Q |
97 |
tacaattaaacaacacccatacaatcaaaggggatgctgccaccaaccaacaaactcaagagaaacatttgcgaccttatgcttcagc-caccacaaaaa |
195 |
Q |
| |
|
||||||||| |||||| || ||||||||||||| ||| |||||||| | |||||||||||||||||||||| | ||| ||||||| ||||||||| | |
|
|
| T |
17401244 |
tacaattaaccaacactcaaacaatcaaagggg--gctcccaccaactagcaaactcaagagaaacatttgcacctttacgcttcaggtcaccacaaaga |
17401147 |
T |
|
| Q |
196 |
caaatatttaaccttatcaagcagttgagacatcaatttctccgtatggttaaaaaccctgtcatttcactcttgccagataactcacacacatataaac |
295 |
Q |
| |
|
||||| |||||||||||||| || || || ||||||||||||| |||| ||||| | | ||||| ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
17401146 |
caaatgtttaaccttatcaaacaattaaggcatcaatttctccttatgattaaacaacttgtcagttcactcttgccagataacccacacaccggtaaac |
17401047 |
T |
|
| Q |
296 |
caaat |
300 |
Q |
| |
|
||||| |
|
|
| T |
17401046 |
caaat |
17401042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 77 - 286
Target Start/End: Original strand, 35947250 - 35947458
Alignment:
| Q |
77 |
ataaaaaagaaacaaaacaatacaattaaacaacacccatacaatcaaaggggatgctgccaccaaccaacaaactcaagagaaacatttgcgaccttat |
176 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||| | |||||| ||| ||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
35947250 |
ataaaaaagaaacaaaacattacaattaaccaacacccaaatgatcaaaagggg-gctgccaccaattggcaaactcaactgaaacatttaaagtcttat |
35947348 |
T |
|
| Q |
177 |
gcttcagccaccacaaaaacaaatatttaaccttatcaagcagttgagacatcaatttctccgtatggttaaaaaccctgtcatttcactcttgccagat |
276 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| || |||||| || |||| ||| ||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
35947349 |
gcttcagccaccacaaagacaaatatttaaccatatcaaacaactgagacgtcgatttttccttataattaaaaaacctgtcatttcactcttgtcagat |
35947448 |
T |
|
| Q |
277 |
aactcacaca |
286 |
Q |
| |
|
|||||||||| |
|
|
| T |
35947449 |
aactcacaca |
35947458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 22600943 - 22601014
Alignment:
| Q |
121 |
tcaaaggggatgctgccaccaaccaacaaactcaagagaaacatttgcgaccttatgcttcagccaccacaa |
192 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
22600943 |
tcaaaagggacgctgccaccaaccaacaaactcaaaagaattatttgcaaccttatgcttcagccaccacaa |
22601014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 16597552 - 16597474
Alignment:
| Q |
137 |
caccaaccaacaaactcaagagaaacatttgcgaccttatgcttcagccaccacaaaaacaaatatttaaccttatcaa |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||| | |||||| ||||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
16597552 |
caccaaccagcaaactcaagagaaacatttataatcttatgtttcagtcaccacaaagacaaatatttaactttatcaa |
16597474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 303
Target Start/End: Complemental strand, 6452592 - 6452418
Alignment:
| Q |
128 |
ggatgctgccaccaaccaacaaactcaagagaaacatttgcgaccttatgcttcagccaccacaaaaacaaatatttaaccttatcaagcagttgagaca |
227 |
Q |
| |
|
|||||||||||||||||| |||| |||| |||||| ||| || ||||||||||||||||| ||| ||| |||||| || ||||| |||| || || | |
|
|
| T |
6452592 |
ggatgctgccaccaaccatcaaaatcaaaagaaacgaatgcaacgttatgcttcagccaccataaagacacatatttgacgttatccagca-atgtgata |
6452494 |
T |
|
| Q |
228 |
tcaatttctccgtatggttaaaaaccctgtcatttcactcttgccagataactcacacacata-taaaccaaattaa |
303 |
Q |
| |
|
|| |||||| | | ||||||||||| || ||||| | |||||||| ||||| |||||| ||| ||||||||||||| |
|
|
| T |
6452493 |
tcgatttcttcctttggttaaaaacactatcattacgttcttgccaaataacccacaca-atagtaaaccaaattaa |
6452418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 16899518 - 16899442
Alignment:
| Q |
173 |
ttatgcttcagccaccacaaaaacaaatatttaaccttatcaagcagttgagacatcaatttctccgtatggttaaa |
249 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||| |||||||| |||| |||| | | | |||||||| | |||||||| |
|
|
| T |
16899518 |
ttatgcttcagacaccacaaagacacatatttgaccttatcgagcaattgaaataacgatttctccttttggttaaa |
16899442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 3374786 - 3374669
Alignment:
| Q |
76 |
gataaaaaagaaacaaaacaatacaattaaacaacacccatacaatcaaaggggatgctgccaccaaccaacaaactcaagagaaacatttgcgacctta |
175 |
Q |
| |
|
||||||||||||| | |||||||||||||| ||||||||| |||||||||| | ||| | |||||| ||||||||||||| ||| ||||| |
|
|
| T |
3374786 |
gataaaaaagaaatagaacaatacaattaagcaacacccaaacaatcaaaga--acgctccgaccaac--------tcaagagaaacatctgcaccctta |
3374697 |
T |
|
| Q |
176 |
tgcttcagccaccacaaaaacaaatatt |
203 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
3374696 |
tgcctcagccaccacaaaaacaaatatt |
3374669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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