View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15482_low_6 (Length: 238)
Name: NF15482_low_6
Description: NF15482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15482_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 26646911 - 26647134
Alignment:
| Q |
9 |
acatcatcatcaagcaccaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataata |
108 |
Q |
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||||||||||||| |||||||||||| |||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26646911 |
acatcatcatcaaccaccaactcaaaacaatctttctcaattatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgcataata |
26647010 |
T |
|
| Q |
109 |
tctccattagcaaaggagatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttccttaattacatcttccttttcccaaatcattctgttcat |
208 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |
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| T |
26647011 |
tctccattagcaaaggagatgtcacaacaccatctataaaaaattcatgcaccaaggcttccttaattacatcttccttttcccgaatcattatgttcgt |
26647110 |
T |
|
| Q |
209 |
tgaacttgtgccactttctttcat |
232 |
Q |
| |
|
||||||| |||||||||||||||| |
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| T |
26647111 |
tgaacttttgccactttctttcat |
26647134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 13682805 - 13682629
Alignment:
| Q |
24 |
accaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaag |
123 |
Q |
| |
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||||||||||||| || ||||| | | ||||||||||| |||||| ||||||||| | |||||||| | |||||| ||||||||| ||||||||||||| |
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| T |
13682805 |
accaactcaaacctattttccttgattctgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtataatatgtccattagcaaag |
13682706 |
T |
|
| Q |
124 |
gagatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttccttaattacatcttccttttcccaaatcatt |
200 |
Q |
| |
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||||||||||||||||| | || | ||||||||||||||||||||||||||| | |||||||| |||| |
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| T |
13682705 |
gagatgtcacaacaccaaccacaaaaaagtgctccaccaaggcttccttaattacatcttcttcttcccaaaacatt |
13682629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 13669920 - 13669772
Alignment:
| Q |
52 |
tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnn |
151 |
Q |
| |
|
||||||||||| |||||| ||||||||| | |||||||| | |||||| ||||||||| |||||||||||||||||||||||||||||| | |
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| T |
13669920 |
tgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtataatatgtccattagcaaaggagatgtcacaacaccaaccacaaaaaa |
13669821 |
T |
|
| Q |
152 |
ttgatgcaccaaggcttccttaattacatcttccttttcccaaatcatt |
200 |
Q |
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|| | ||||||||||||||||||||||||||| | |||||||| |||| |
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| T |
13669820 |
gtgctccaccaaggcttccttaattacatcttcttcttcccaaaacatt |
13669772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 13689373 - 13689216
Alignment:
| Q |
24 |
accaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaag |
123 |
Q |
| |
|
||||||||||||| || ||||| | | ||||||||||| |||||| ||||||||| | |||||||| | |||||| ||||| | ||||||||||||| |
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|
| T |
13689373 |
accaactcaaacctattttccttgattctgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtata---tgtccattagcaaag |
13689277 |
T |
|
| Q |
124 |
gagatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttccttaattacatcttc |
184 |
Q |
| |
|
|||||||||||||||||||| || | ||||||||||||||||||||||||||| |
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| T |
13689276 |
gagatgtcacaacaccatctagaaaaaagtgctccaccaaggcttccttaattacatcttc |
13689216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 22188262 - 22188367
Alignment:
| Q |
24 |
accaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaag |
123 |
Q |
| |
|
|||||| |||||| || ||||| || | | |||| |||| ||||||||||||||| |||||||||| |||||||| ||||||||| ||||||| ||||| |
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| T |
22188262 |
accaacccaaacctattttcctcaattctaacaaccttagacgtagtattgttagcatttattgattgataaccattgtataatatgtccattatcaaag |
22188361 |
T |
|
| Q |
124 |
gagatg |
129 |
Q |
| |
|
|||||| |
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|
| T |
22188362 |
gagatg |
22188367 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 13687342 - 13687264
Alignment:
| Q |
106 |
atatctccattagcaaaggagatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttccttaattacatcttc |
184 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |
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| T |
13687342 |
atatgtccattagcaaaggagatgtcacaacaccatctagaaaaaagtgctccaccaaggcttccttaattacatcttc |
13687264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 36992080 - 36992228
Alignment:
| Q |
52 |
tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnn |
151 |
Q |
| |
|
||||||||||| |||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36992080 |
tgacaaacttagccgtagtattgtcagcatttattgattgataaccattgtataatatctccattagcaaaggagatgtcacagcaccatctacaaagaa |
36992179 |
T |
|
| Q |
152 |
ttgatgcaccaaggcttccttaattacatcttccttttcccaaatcatt |
200 |
Q |
| |
|
|| | ||||||||||||| |||||||||||| |||||||||| |||| |
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| T |
36992180 |
gtgcttcaccaaggcttccataattacatcttgtttttcccaaaacatt |
36992228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 37001797 - 37001945
Alignment:
| Q |
52 |
tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnn |
151 |
Q |
| |
|
||||||||||| |||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37001797 |
tgacaaacttagccgtagtattgtcagcatttattgattgataaccattgtataatatctccattagcaaaggagatgtcacagcaccatctacaaagaa |
37001896 |
T |
|
| Q |
152 |
ttgatgcaccaaggcttccttaattacatcttccttttcccaaatcatt |
200 |
Q |
| |
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|| | ||||||||||||| |||||||||||| |||||||||| |||| |
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| T |
37001897 |
gtgcttcaccaaggcttccataattacatcttgtttttcccaaaacatt |
37001945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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