View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15483_high_1 (Length: 647)

Name: NF15483_high_1
Description: NF15483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15483_high_1
NF15483_high_1
[»] chr5 (2 HSPs)
chr5 (37-631)||(825319-825889)
chr5 (67-107)||(32320865-32320905)
[»] chr8 (1 HSPs)
chr8 (57-97)||(17712773-17712813)
[»] chr4 (2 HSPs)
chr4 (57-132)||(8291064-8291140)
chr4 (37-103)||(35737945-35738010)
[»] chr7 (1 HSPs)
chr7 (37-131)||(39158647-39158741)
[»] chr2 (2 HSPs)
chr2 (69-132)||(9131700-9131763)
chr2 (57-101)||(9964664-9964708)
[»] chr1 (1 HSPs)
chr1 (57-105)||(51049823-51049871)


Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 37 - 631
Target Start/End: Complemental strand, 825889 - 825319
Alignment:
Q  37 agtgccataaggacattgggttaaggaattcataaaagaaaagtttgtcttggaaatacaagttaaacattgtcaatgtaataaatacatcattttgcta 136  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  825889 agtgtcataaggacattgg-ttaaggaattcataaaagaaaagtttgtcttggaaatacaagttaaacattgtcaatgtaataaatacatcatt------ 825797  T
Q  137 tatgaattgcatattttgattcttaatcaaatgtcttaa-ggacatttgttggcattctcctatacaataaaataaatagtgattaaatgaataatatca 235  Q
                   |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  825796 ---------------ttgattcttaatcaaatgtcttaaaggacatttgttggcattctcctataaaataaaataaatagtgattaaatgaataatatca 825712  T
Q  236 tggatgcatttgataatagtaatatatctcgattaagggagaaatctgattaacattttgtaatcatggactaaattaagcatgtatgtattgaataaat 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825711 tggatgcatttgataatagtaatatatctcgattaagggagaaatctgattaacattttgtaatcatggactaaattaagcatgtatgtattgaataaat 825612  T
Q  336 aaa-taaaaaagtactgcagtaccttaaaaagaacaggagtttgtttaagtggaccctgggaaactctgccttcataaagcctgcactgcgatcaagctg 434  Q
    ||| |||||||     | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825611 aaaataaaaaaa----gtaataccttaaaaagaacaggagtttgtttaagtggaccctgggaaactctgccttcataaagcctgcactgcgatcaagctg 825516  T
Q  435 tcatcattcatgagtatccaatttagtccctcacagtgttcaaattagtcctcgggtaactaactaagtacctgattttgacgctgccttcttgaacatc 534  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  825515 tcatcattcataggtatccaatttagtccctcacagtgttcaaattagtcatcgggtaactaactaagtacctgattttgacgctgccttcttgaacatc 825416  T
Q  535 ttgagttttcaatccaccaccaagtgaatattgatcggtactggaagtagtgacgttcatgaaaccatagttgccaatgggtcgacccacttggaac 631  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825415 ttgagttttcaatccaccaccaagtgaatattgatcggtactggaagtagtgacgttcatgaaaccatagttgccaatgggtcgacccacttggaac 825319  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 32320905 - 32320865
Alignment:
Q  67 cataaaagaaaagtttgtcttggaaatacaagttaaacatt 107  Q
    ||||||||||||  ||||||||||||||||||| |||||||    
T  32320905 cataaaagaaaaacttgtcttggaaatacaagtcaaacatt 32320865  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 17712813 - 17712773
Alignment:
Q  57 ttaaggaattcataaaagaaaagtttgtcttggaaatacaa 97  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  17712813 ttaagaaattcataaaagaaaagtttatcttggaaatacaa 17712773  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 8291064 - 8291140
Alignment:
Q  57 ttaaggaattcataaaagaaaagtttgtcttggaaatacaagttaaaca-ttgtcaatgtaataaatacatcatttt 132  Q
    ||||||||| |||| ||| ||| |||||||||||||||||||| ||||| ||||||  || |||| |||||||||||    
T  8291064 ttaaggaatacatataaggaaaatttgtcttggaaatacaagtcaaacacttgtcatagtcataattacatcatttt 8291140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 35738010 - 35737945
Alignment:
Q  37 agtgccataaggacattgggttaaggaattcataaaagaaaagtttgtcttggaaatacaagttaaa 103  Q
    |||||| ||||| |||||| |||| ||||||||||||  ||||||| |||||||||||||| |||||    
T  35738010 agtgccctaagggcattgg-ttaaagaattcataaaatgaaagtttttcttggaaatacaatttaaa 35737945  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 39158647 - 39158741
Alignment:
Q  37 agtgccataaggacattgggttaaggaattcataaaagaaaagtttgtcttggaaatacaagttaaacatt-gtcaatgtaataaatacatcattt 131  Q
    |||||| ||||| |||||| |||||||| | ||||||| ||| ||||||| | |||||||||| |||| || |||||| ||||||||||| |||||    
T  39158647 agtgccctaagggcattgg-ttaaggaacttataaaaggaaaatttgtctcgaaaatacaagtcaaacctttgtcaatataataaatacaacattt 39158741  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 9131700 - 9131763
Alignment:
Q  69 taaaagaaaagtttgtcttggaaatacaagttaaaca-ttgtcaatgtaataaatacatcatttt 132  Q
    |||||||||| ||||| |||||||||||||| ||||| ||||  | |||||||||||||||||||    
T  9131700 taaaagaaaattttgt-ttggaaatacaagtcaaacacttgtggaagtaataaatacatcatttt 9131763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 9964708 - 9964664
Alignment:
Q  57 ttaaggaattcataaaagaaaagtttgtcttggaaatacaagtta 101  Q
    |||||||||||||||||  || |||||||||| ||||||||||||    
T  9964708 ttaaggaattcataaaaagaatgtttgtcttgaaaatacaagtta 9964664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 51049823 - 51049871
Alignment:
Q  57 ttaaggaattcataaaagaaaagtttgtcttggaaatacaagttaaaca 105  Q
    |||||||||| | ||||||||| | ||||||| ||||||||||||||||    
T  51049823 ttaaggaatttagaaaagaaaattatgtcttgaaaatacaagttaaaca 51049871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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