View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15483_high_10 (Length: 239)

Name: NF15483_high_10
Description: NF15483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15483_high_10
NF15483_high_10
[»] chr8 (5 HSPs)
chr8 (7-223)||(16790689-16790907)
chr8 (56-222)||(16792602-16792768)
chr8 (54-216)||(16616970-16617131)
chr8 (55-222)||(16628664-16628833)
chr8 (55-222)||(16637545-16637714)
[»] chr4 (1 HSPs)
chr4 (113-221)||(38877471-38877579)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 16790907 - 16790689
Alignment:
Q  7 gtgagatgaaaatgctctcgaattgttgtgataatcttcta---tttttattttctaccattgaaatttactagaatactatgccgttatatttttcctc 103  Q
    |||| ||||||||||||||||||||||||| |||||||||    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  16790907 gtgaaatgaaaatgctctcgaattgttgtggtaatcttcttatttttttattttctaccattgaaatctactagaatactatgccgttatatttt-cctc 16790809  T
Q  104 acttcttttaagaactttcctgtcacattgttaactctatcattaaaatcagaatcttttagcaaaaataatagacataaacaatcaattgtttgacaac 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16790808 acttcttttaagaactttcctgtcacattgttaactctatcattaaaatcagaatcttttagcaaaaataatagacataaacaatcaattgtttgacaat 16790709  T
Q  204 gaggtggttatcgttgaaag 223  Q
    ||||||||||||||||||||    
T  16790708 gaggtggttatcgttgaaag 16790689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 16792768 - 16792602
Alignment:
Q  56 ttctaccattgaaatttactagaatactatgccgttatatttttcctcacttcttttaagaactttcctgtcacattgttaactctatcattaaaatcag 155  Q
    |||||| |||||||||||||||  || ||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||    
T  16792768 ttctactattgaaatttactagcgtagtatgctgttatatttttcctcacttcttttaagaactttaatgtcacattgttaactctaacatgaaaatcag 16792669  T
Q  156 aatcttttagcaaaaataatagacataaacaatcaattgtttgacaacgaggtggttatcgttgaaa 222  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16792668 aatcttttagcaaatataatagacataaacaatcaattgtttgacaatgaggtggttatcgttgaaa 16792602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 216
Target Start/End: Complemental strand, 16617131 - 16616970
Alignment:
Q  54 ttttctaccattgaaatttactagaatactatgccgttatatttttcctcacttcttttaagaactttcctgtcacattgttaactctatcattaaaatc 153  Q
    ||||||||||||||||| |||||||| | ||| || |||| |||||| |||||||||  ||||| ||| ||||||||||||||||| || ||  ||||||    
T  16617131 ttttctaccattgaaatctactagaagagtataccattatttttttc-tcacttcttacaagaattttactgtcacattgttaactgtagcaggaaaatc 16617033  T
Q  154 agaatcttttagcaaaaataatagacataaacaatcaattgtttgacaacgaggtggttatcg 216  Q
    ||||| |||||||| |||||| |||||| ||||||| |||||| ||||  |||||||||||||    
T  16617032 agaatattttagcagaaataaaagacattaacaatcgattgttcgacagtgaggtggttatcg 16616970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 16628833 - 16628664
Alignment:
Q  55 tttctaccattgaaatttactagaatactatgccgttatatttttc--ctcacttcttttaagaactttcctgtcacattgttaactctatcattaaaat 152  Q
    ||||||||||||||||  ||| ||  | ||||||||||| ||||||  ||||||||||  |  || |||  |||||||||||| |||||| ||  ||| |    
T  16628833 tttctaccattgaaatccactggacgagtatgccgttatttttttcatctcacttcttgcaccaattttattgtcacattgttgactctagcaggaaatt 16628734  T
Q  153 cagaatcttttagcaaaaataatagacataaacaatcaattgtttgacaacgaggtggttatcgttgaaa 222  Q
    |||||| |||||||| |||||| ||||||||| |||| ||||||||||   ||||||||||||| |||||    
T  16628733 cagaatgttttagcagaaataaaagacataaataatcgattgtttgactgtgaggtggttatcggtgaaa 16628664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 16637714 - 16637545
Alignment:
Q  55 tttctaccattgaaatttactagaatactatgccgttatatttttc--ctcacttcttttaagaactttcctgtcacattgttaactctatcattaaaat 152  Q
    ||||||||||||||||  ||| ||  | ||||||||||| ||||||  ||||||||||  |  || |||  |||||||||||| |||||| ||  ||| |    
T  16637714 tttctaccattgaaatccactggacgagtatgccgttatttttttcatctcacttcttgcaccaattttattgtcacattgttgactctagcaggaaatt 16637615  T
Q  153 cagaatcttttagcaaaaataatagacataaacaatcaattgtttgacaacgaggtggttatcgttgaaa 222  Q
    |||||| |||||||| |||||| ||||||||| |||| ||||||||||   ||||||||||||| |||||    
T  16637614 cagaatgttttagcagaaataaaagacataaataatcgattgtttgactgtgaggtggttatcggtgaaa 16637545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 38877579 - 38877471
Alignment:
Q  113 aagaactttcctgtcacattgttaactctatcattaaaatcagaatcttttagcaaaaataatagacataaacaatcaattgtttgacaacgaggtggtt 212  Q
    ||||| ||| ||| |||||||||||||||| ||  ||||||||||  |||||||| |||||| ||||||||||||||||||||| |||   |||||||||    
T  38877579 aagaattttactgacacattgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactgtgaggtggtt 38877480  T
Q  213 atcgttgaa 221  Q
    |||| ||||    
T  38877479 atcgctgaa 38877471  T

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