View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15483_high_2 (Length: 592)
Name: NF15483_high_2
Description: NF15483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15483_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 582
Target Start/End: Complemental strand, 29146474 - 29145907
Alignment:
| Q |
18 |
aactagtagagccaaaacctttggggaaatgaacaaatttcaaatgggattgaaataaaactaggacatggacgctcctttcatttctttctctttgaag |
117 |
Q |
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| T |
29146474 |
aactagtagagccaaaacctt-ggggaaatgaacaaatttcaaatgggattgaaataaaactaggacatggacgctcctttcatttctttctctttgaag |
29146376 |
T |
|
| Q |
118 |
ataagagacaactctaacagtgtactgcatagaagcacttaaataattgaccataact---gtcacaattttgtatctattatatagacatatagtgcca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29146375 |
ataagagacaactctaacagtgtactgcatagaagcacttaaataattgaccattactactgtcacaattttgtatctattatatagacatatagtgcca |
29146276 |
T |
|
| Q |
215 |
aaaacaatattatcgtgctattttgtcgcgtcacctcgaaaaatataactcttgtgacttgtgacactatgtgcattcnnnnnnn-caagaaacaaaaac |
313 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29146275 |
aaaacaatattatcgtgctattttgtcgtgtcacctcgaaaaatataactcttgtgacttgtgacactatgtgcattcttttttttcaagaaacaaaaac |
29146176 |
T |
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| Q |
314 |
aaaatactaatacatattagaatcaagcatgaataaaaaatgcatgtaaatttcatgattttactctaccgccaccccctaactgctttcaaagacagag |
413 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29146175 |
aaaatactattacatattagaatcaagcatgaataaaaaatgcatgtaaatttcatgattttactctaccaccaccccctaactgctttcaaagacagag |
29146076 |
T |
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| Q |
414 |
taacccttgctaaaatctgcatttaaaaattacaataattaaattggtaaattaatattaaagggtacatcaatgccataaatattcaactttcctccta |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29146075 |
taacccttgctaaaatctgcatttaaaaattacaataattaaattgataaattaatattaaagggtacatcaatgccataaatattcaactttcttccta |
29145976 |
T |
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| Q |
514 |
attagatgaatttggtttctttggtgtcagatccaagtgagggccaaaattgtgcattcttcacctttg |
582 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29145975 |
attagatgaatttggtttctttggtgtcagatccaagtgatggccaaaattgtgcattcttcacctttg |
29145907 |
T |
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