View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15483_high_4 (Length: 448)
Name: NF15483_high_4
Description: NF15483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15483_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 2525260 - 2525680
Alignment:
| Q |
13 |
attaacaccgaagaaaatcgatcatgattttttaagagtttatcgtggtggttccattttcaagagctattagtttcaacaatattttagaaccacagat |
112 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
2525260 |
attaacaccgaagaaaatcgaacatgattttttaagagtttatcgtggtggttccattttcaagagctattagtttcaacaacattttagaaccacaaat |
2525359 |
T |
|
| Q |
113 |
tcccaacttgaatctaatttatactttttgcttgtttatttatcaaatttgaatattaagttgttataattaattattgattgaatcgttctggttttgt |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2525360 |
tcccaacttgaacctaatttatactttttgcttgtttatttatcaaatttgaatattaagttgttataattaattattgattgaatcgttctggttttgt |
2525459 |
T |
|
| Q |
213 |
ttcattttcttgggcgaaggttttcctcaaggttttgacattaatgaagataatgacgctaatgaagaggaaaagaaaagggaattagaattttgtattt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2525460 |
ttcattttcttgggcgaaggttttcctcaaggttttgacattaatgaagataatgaccctaatgaagaggaaaagaaaagggaattagaattttgtattt |
2525559 |
T |
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| Q |
313 |
aaagaatagaagagtgctagcaacaacactcattttttaacactctctttaacatttgcnnnnnnnattggatgaaatcaatgtatctatcaccactttg |
412 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| |
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| T |
2525560 |
aaagaatagaagagtgttagcaacaacactcattttttaacactctctttaacactcg-tttttttattggatgaaatcaatgtatctatcaccactttg |
2525658 |
T |
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| Q |
413 |
tgtggtttctgttttcaaagtg |
434 |
Q |
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|||| ||||||||||||||||| |
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| T |
2525659 |
tgtgatttctgttttcaaagtg |
2525680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 13975525 - 13975493
Alignment:
| Q |
336 |
caacactcattttttaacactctctttaacatt |
368 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
13975525 |
caacactcatttttgaacactctctttaacatt |
13975493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 50481674 - 50481619
Alignment:
| Q |
379 |
attggatgaaatcaatgtatctatcaccactttgtgtggtttctgttttcaaagtg |
434 |
Q |
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||||||||||||||| |||| | |||||||||||| |||||||| ||||||||||| |
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| T |
50481674 |
attggatgaaatcaaagtatgtctcaccactttgtatggtttctattttcaaagtg |
50481619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 28218177 - 28218122
Alignment:
| Q |
379 |
attggatgaaatcaatgtatctatcaccactttgtgtggtttctgttttcaaagtg |
434 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||||| ||| ||||||||||| |
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| T |
28218177 |
attggatgaaatcaatgtatgtctcaccactttgtgtggattcaattttcaaagtg |
28218122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Original strand, 2225275 - 2225330
Alignment:
| Q |
379 |
attggatgaaatcaatgtatctatcaccactttgtgtggtttctgttttcaaagtg |
434 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||| ||| |||| ||||||| |
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| T |
2225275 |
attggatgaaatcaatgtatgtcccaccactttgtgtgggttcggtttacaaagtg |
2225330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 18427279 - 18427224
Alignment:
| Q |
379 |
attggatgaaatcaatgtatctatcaccactttgtgtggtttctgttttcaaagtg |
434 |
Q |
| |
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|||||||||||||||||||| | ||||| ||||||||| |||| ||||||||||| |
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| T |
18427279 |
attggatgaaatcaatgtatgtcccaccattttgtgtgggttctattttcaaagtg |
18427224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 445869 - 445923
Alignment:
| Q |
379 |
attggatgaaatcaatgtatctatcaccactttgtgtggtttctgttttcaaagt |
433 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||| ||| |||||||||| |
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| T |
445869 |
attggatgaaatcaatgtatgtcacaccactttgtgtgggttcaattttcaaagt |
445923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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