View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15483_low_10 (Length: 261)

Name: NF15483_low_10
Description: NF15483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15483_low_10
NF15483_low_10
[»] chr7 (13 HSPs)
chr7 (17-245)||(39537092-39537320)
chr7 (17-241)||(39354396-39354620)
chr7 (19-243)||(39366997-39367219)
chr7 (17-238)||(39563200-39563429)
chr7 (74-241)||(39339555-39339722)
chr7 (74-241)||(1083978-1084143)
chr7 (56-238)||(39546593-39546773)
chr7 (108-214)||(39588386-39588492)
chr7 (107-245)||(39573907-39574045)
chr7 (108-240)||(39621241-39621373)
chr7 (17-49)||(1083714-1083746)
chr7 (103-132)||(39339727-39339756)
chr7 (17-61)||(39339755-39339799)
[»] chr1 (1 HSPs)
chr1 (186-229)||(2159901-2159944)
[»] chr4 (1 HSPs)
chr4 (176-240)||(2896424-2896488)
[»] chr2 (2 HSPs)
chr2 (179-219)||(44210194-44210234)
chr2 (179-219)||(44233215-44233255)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 39537092 - 39537320
Alignment:
Q  17 aattctttgataagtgctttgtttctcctgaaacagttgtagtagattattttccatttctatagtttgattagattgtgcataccagtgaaaatacctg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39537092 aattctttgataagtgctttgtttctcctgaaacagttgtagtagattattttccatttctatagtttgattagattgtgcataccagtgaaaatacctg 39537191  T
Q  117 tataactctgaatttttgtacacctctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccatgttgctggattataac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39537192 tataactctgaatttttgtacacctctgcaaaatcaatccccaattccctttctttagatgaagtggtgacttccaacatccatgttgctggattataac 39537291  T
Q  217 cgtatttaatcttgctaacaccttgtatt 245  Q
    |||||||||||||||||||||||| ||||    
T  39537292 cgtatttaatcttgctaacaccttttatt 39537320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 39354620 - 39354396
Alignment:
Q  17 aattctttgataagtgctttgtttctcctgaaacagttgtagtagattattttccatttctatagtttgattagattgtgcataccagtgaaaatacctg 116  Q
    |||||||||| ||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  39354620 aattctttgacaagtgctttgtttatcctgaaacaattatagtagattattttccatttctatagtttgattagattgtgggtaccagtgaaaatacctg 39354521  T
Q  117 tataactctgaatttttgtacacctctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccatgttgctggattataac 216  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39354520 tataactctgaatttttgtacaactctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccatgttgctggattataac 39354421  T
Q  217 cgtatttaatcttgctaacaccttg 241  Q
    ||| ||| ||||| |||||||||||    
T  39354420 cgtctttgatctttctaacaccttg 39354396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 39367219 - 39366997
Alignment:
Q  19 ttctttgataagtgctttgtttctcctgaaacagttgtagtagattattttccatttctatagtttgattagattgtgcataccagtgaaaatacctgta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||   ||||| ||||||||||||||||    
T  39367219 ttctttgataagtgctttgtttctcctgaaacagttgtagtagattattttctagttctataatttgatttgattt--catacaagtgaaaatacctgta 39367122  T
Q  119 taactctgaatttttgtacacctctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccatgttgctggattataaccg 218  Q
    |||||||||||||||||||||||||||| |||||||||  || |||  |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39367121 taactctgaatttttgtacacctctgcataatcaatccgtaactccacttctttggatgaagttgtgacttccaacatccatgttgctggattataaccg 39367022  T
Q  219 tatttaatcttgctaacaccttgta 243  Q
    | |||||||||||||||||||||||    
T  39367021 tctttaatcttgctaacaccttgta 39366997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 39563200 - 39563429
Alignment:
Q  17 aattctttgataagtgctttgtttctcctgaaacagttgtagtagattattttccatttctatagtttgattagattg--------tgcataccagtgaa 108  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||   ||||||||||||||| ||||         | ||||| ||||||    
T  39563200 aattctttgataagtgctttgtttctcctaaaacagttatagtagattattttctgattctatagtttgatttgatttgatttgatttcatacaagtgaa 39563299  T
Q  109 aatacctgtataactctgaatttttgtacacctctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccatgttgctgg 208  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39563300 aatacctgtataactctgaattttggtacacctctgcaaaatcaatccccaattccctttcttttgatgaagttgtgacttccaacatccatgttgctgg 39563399  T
Q  209 attataaccgtatttaatcttgctaacacc 238  Q
    ||||||||||| ||||||||||||||||||    
T  39563400 attataaccgtctttaatcttgctaacacc 39563429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 39339722 - 39339555
Alignment:
Q  74 ttctatagtttgattagattgtgcataccagtgaaaatacctgtataactctgaatttttgtacacctctgcaaaatcaatccccaattccctttcttta 173  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||  |||||||    
T  39339722 ttctatagtttgattagattgtgtataccagtgaaaatacctgtataactctgaatttttgtacaactctacaaaatcaatccccaattccacttcttta 39339623  T
Q  174 gatgaagttgtgacttccaacatccatgttgctggattataaccgtatttaatcttgctaacaccttg 241  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  39339622 gatgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttg 39339555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 74 - 241
Target Start/End: Original strand, 1083978 - 1084143
Alignment:
Q  74 ttctatagtttgattagattgtgcataccagtgaaaatacctgtataactctgaatttttgtacacctctgcaaaatcaatccccaattccctttcttta 173  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||  ||| |||    
T  1083978 ttctatagtttgattagattg--catacaagggaaaatacctgtataactgtgagtttttgtacacctctgcaaaatcaatccctaattccacttcctta 1084075  T
Q  174 gatgaagttgtgacttccaacatccatgttgctggattataaccgtatttaatcttgctaacaccttg 241  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  1084076 gatgaagctgtgacttccaacatccatgttgctggattataaccgtctttaatcttggtaacaccttg 1084143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 56 - 238
Target Start/End: Original strand, 39546593 - 39546773
Alignment:
Q  56 tagtagattattttccatttctatagtttgattagattgtgcataccagtgaaaatacctgtataactctgaatttttgtacacctctgcaaaatcaatc 155  Q
    |||| |||||||||| |||||||||||||||||||||| |  |||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39546593 tagttgattattttcgatttctatagtttgattagattatatata--agtgaaaatacctgtataaatctgaatttttgtacacctctgcaaaatcaatc 39546690  T
Q  156 cccaattccctttctttagatgaagttgtgacttccaacatccatgttgctggattataaccgtatttaatcttgctaacacc 238  Q
    ||||| ||   ||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||| |||||| |||||||    
T  39546691 cccaaatctacttctttagatgaatttgtgatttccaacatccatgttgctggattataaccctctttgatcttgttaacacc 39546773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 39588386 - 39588492
Alignment:
Q  108 aaatacctgtataactctgaatttttgtacacctctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccatgttgctg 207  Q
    ||||||||||||||   ||||||| |||||||||| |||||||||| ||| |||||   ||||||||||||||| ||||||||||| ||||| |||||||    
T  39588386 aaatacctgtataatgttgaatttatgtacacctcagcaaaatcaacccctaattctaattctttagatgaagtagtgacttccaaaatccaagttgctg 39588485  T
Q  208 gattata 214  Q
    |||||||    
T  39588486 gattata 39588492  T

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Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 245
Target Start/End: Original strand, 39573907 - 39574045
Alignment:
Q  107 aaaatacctgtataactctgaatttttgtacacctctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccatgttgct 206  Q
    |||||||||||| || |||||  ||||||||||||| ||||||| |||| ||| |||| ||||||| | |||  | || |||||||||||||| ||||||    
T  39573907 aaaatacctgtacaattctgagcttttgtacacctcagcaaaattaatctccatttccatttcttttgctgagctagtaacttccaacatccaagttgct 39574006  T
Q  207 ggattataaccgtatttaatcttgctaacaccttgtatt 245  Q
    ||||| || || | ||||| ||| || ||||||||||||    
T  39574007 ggattgtagccatctttaagcttactgacaccttgtatt 39574045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 240
Target Start/End: Original strand, 39621241 - 39621373
Alignment:
Q  108 aaatacctgtataactctgaatttttgtacacctctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccatgttgctg 207  Q
    |||||||||||||| ||||||||||||||||| || | |||||||||| |||||| | |||||||   |||||  || | |||||||||||| | |||||    
T  39621241 aaatacctgtataattctgaatttttgtacacttcagaaaaatcaatctccaattgcatttctttttctgaagaagtaatttccaacatccaagctgctg 39621340  T
Q  208 gattataaccgtatttaatcttgctaacacctt 240  Q
    | ||| |||| | || |||||| || |||||||    
T  39621341 ggttacaaccatcttcaatcttactgacacctt 39621373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 1083714 - 1083746
Alignment:
Q  17 aattctttgataagtgctttgtttctcctgaaa 49  Q
    |||||||||||||||||||||||||||||||||    
T  1083714 aattctttgataagtgctttgtttctcctgaaa 1083746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 132
Target Start/End: Complemental strand, 39339756 - 39339727
Alignment:
Q  103 agtgaaaatacctgtataactctgaatttt 132  Q
    ||||||||||||||||||||||||||||||    
T  39339756 agtgaaaatacctgtataactctgaatttt 39339727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 39339799 - 39339755
Alignment:
Q  17 aattctttgataagtgctttgtttctcctgaaacagttgtagtag 61  Q
    ||||| |||||||||||||||||| |||||||||| || ||||||    
T  39339799 aattccttgataagtgctttgtttatcctgaaacaattatagtag 39339755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 2159901 - 2159944
Alignment:
Q  186 acttccaacatccatgttgctggattataaccgtatttaatctt 229  Q
    |||||||||||||||||||| ||||||||||| | |||||||||    
T  2159901 acttccaacatccatgttgcaggattataaccatctttaatctt 2159944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 2896424 - 2896488
Alignment:
Q  176 tgaagttgtgacttccaacatccatgttgctggattataaccgtatttaatcttgctaacacctt 240  Q
    |||| |||| |||||||||||||| |||||||||||||| || | |||||| || ||||| ||||    
T  2896424 tgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaacccctt 2896488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 44210194 - 44210234
Alignment:
Q  179 agttgtgacttccaacatccatgttgctggattataaccgt 219  Q
    |||||| ||||||||||||||||||||||| ||||| ||||    
T  44210194 agttgtaacttccaacatccatgttgctgggttatatccgt 44210234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 44233215 - 44233255
Alignment:
Q  179 agttgtgacttccaacatccatgttgctggattataaccgt 219  Q
    |||||| ||||||||||||||||||||||| ||||| ||||    
T  44233215 agttgtaacttccaacatccatgttgctgggttatatccgt 44233255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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