View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15483_low_12 (Length: 249)
Name: NF15483_low_12
Description: NF15483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15483_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 15768613 - 15768845
Alignment:
| Q |
5 |
aggagaaaaatatggagattgtagagagaatggttaaggtagctttggcatgtgttcaatataggccagaatcaagacctaaaatgagtgttgtggtaca |
104 |
Q |
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| T |
15768613 |
aggagaaaaatatggagattgtagagagaatggttaaggtagctttggcatgtgttcaatataggccagaatcaagacctaaaatgagtgttgtggtaca |
15768712 |
T |
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| Q |
105 |
aatgttggaaggtttagttgaaatttcaaagcctttgaatccttttcaatatatgattgatggaacttcttcttatctttcaatgccaatatcacagatc |
204 |
Q |
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| T |
15768713 |
aatgttggaaggtttagttgaaatttcaaagcctttgaatccttttcaatatatgattgatggaacttcttcttatctttcaatgccaatatcacagatc |
15768812 |
T |
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| Q |
205 |
aatactgatacaagtattggttctggctcttct |
237 |
Q |
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| T |
15768813 |
aatactgatacaagtattggttctggatcttct |
15768845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 15773246 - 15773406
Alignment:
| Q |
7 |
gagaaaaatatggagattgtagagagaatggttaaggtagctttggcatgtgttcaatataggccagaatcaagacctaaaatgagtgttgtggtacaaa |
106 |
Q |
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| T |
15773246 |
gagaaaaataaagagattgctgagagaatgattaaggtagctttatggtgtgttcaatataggccagaattaaggcctataatgagtgttgtggtgaaaa |
15773345 |
T |
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| Q |
107 |
tgttggaaggtttagttgaaatttcaaagcctttgaatccttttcaatatatgattgatgg |
167 |
Q |
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| T |
15773346 |
tgttagaaggttcattagaaattccaaagacttttaacccatttcaacatttgattgatgg |
15773406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 15794722 - 15794563
Alignment:
| Q |
7 |
gagaaaaatatggagattgtagagagaatggttaaggtagctttggcatgtgttcaatataggccagaatcaagacctaaaatgagtgttgtggtacaaa |
106 |
Q |
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| T |
15794722 |
gagaaaaatagagagattgctgagagaatggttaaggtagctttatggtgtgttcaatataggcaacaattaaggcctatgatgagtgatgttgtgaaaa |
15794623 |
T |
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| Q |
107 |
tgttggaaggtttagttgaaatttcaaagcctttgaatccttttcaatatatgattgatg |
166 |
Q |
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| T |
15794622 |
tgttggaaggttcattagaaattccaaagacttttaacccatttcaacatttgattgatg |
15794563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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