View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15483_low_6 (Length: 403)

Name: NF15483_low_6
Description: NF15483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15483_low_6
NF15483_low_6
[»] chr6 (3 HSPs)
chr6 (17-102)||(3434569-3434654)
chr6 (320-393)||(3434269-3434342)
chr6 (188-246)||(3434416-3434474)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 3434654 - 3434569
Alignment:
Q  17 cttcttcttatgatgatcattgcagtatgcactttactttgtgtaccttggccttgttgtttgtatatcatcttatgcaggtatgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3434654 cttcttcttatgatgatcattgcagtatgcactttactttgtgtaccttggccttgttgtttgtatatcatcttatgcaggtatgt 3434569  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 3434342 - 3434269
Alignment:
Q  320 catacttgtgtcattttcttcctttcacttgtcaatattgcctaacattatctaagaaaattccattcttctca 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3434342 catacttgtgtcattttcttcctttcacttgtcaatattgcctaacattatctaagaaaattccattcttctca 3434269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 3434474 - 3434416
Alignment:
Q  188 cctaacatgtgaagaagattggttaaacttgcttgcaggaccataaacttttcttagtc 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3434474 cctaacatgtgaagaagattggttaaacttgcttgcaggaccataaacttttcttagtc 3434416  T

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