View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15483_low_7 (Length: 361)
Name: NF15483_low_7
Description: NF15483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15483_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 132 - 344
Target Start/End: Complemental strand, 254822 - 254616
Alignment:
| Q |
132 |
ttttgattcaaatgtaaacaggctttatatttattcaagatagtgccaaact---cagttgcatttaaattatcctcattgatatcatccaccactgaca |
228 |
Q |
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| T |
254822 |
ttttgattcaaatgtaaacaagctttgtatttcttcaagatagtgccaaactactcaattgcattta-----tcctcgttgatatcatccaccactgaca |
254728 |
T |
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| Q |
229 |
ttcaattcaattctgtggtaactcaattaattaacacccatttcatacatatgcatgtcaaggcttgtaacccttttgggggaatgtttccatcaaagtt |
328 |
Q |
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| T |
254727 |
ttcaattcaattctatggtaactcaattaa----cacccatttcatatatatgcatgtcaaggcttgtaacccttttgggggaatgtttccatcaaagtt |
254632 |
T |
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| Q |
329 |
tacacaattatgttgc |
344 |
Q |
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| T |
254631 |
tacacaattatgttgc |
254616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 255285 - 255225
Alignment:
| Q |
13 |
aatatatgtagatttgtaaaattcaatataataaggagaaatcatacacatatcacttttt |
73 |
Q |
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| T |
255285 |
aatatttgtagatttgtaaaattcaatataataaggaaaaatcatacacatattacttttt |
255225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 255168 - 255116
Alignment:
| Q |
72 |
ttgaagtcaagggtacgagcaacatggttggcttgccttctaataaaattaac |
124 |
Q |
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| T |
255168 |
ttgaagtcaagggtatgaggaacatggttggcttgccttcttataaaattaac |
255116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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