View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15483_low_9 (Length: 339)

Name: NF15483_low_9
Description: NF15483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15483_low_9
NF15483_low_9
[»] chr1 (5 HSPs)
chr1 (72-188)||(5536782-5536898)
chr1 (72-188)||(34966659-34966775)
chr1 (72-188)||(46593169-46593285)
chr1 (73-187)||(37467198-37467312)
chr1 (81-188)||(49837764-49837871)
[»] chr6 (3 HSPs)
chr6 (72-188)||(7439161-7439277)
chr6 (73-188)||(29260887-29261002)
chr6 (91-188)||(15286702-15286799)
[»] chr3 (1 HSPs)
chr3 (72-188)||(15791042-15791158)
[»] chr7 (2 HSPs)
chr7 (73-188)||(36283142-36283257)
chr7 (112-188)||(41893093-41893169)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 5536782 - 5536898
Alignment:
Q  72 gaattcaagaagaaaccctatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagaaattgagtatagaattcgttt 171  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  5536782 gaattcaagaagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattgagtatagaattcattt 5536881  T
Q  172 tatgtcattcaagcaaa 188  Q
    |||||||||||||||||    
T  5536882 tatgtcattcaagcaaa 5536898  T

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Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 34966775 - 34966659
Alignment:
Q  72 gaattcaagaagaaaccctatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagaaattgagtatagaattcgttt 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  34966775 gaattcaagaagaaaccctatatcaattttgaatttaatttgtcttttaacaaggaatcataatcgaaaaaaggtttgcaattgagtatagaattcgttt 34966676  T
Q  172 tatgtcattcaagcaaa 188  Q
    |||||||||||||||||    
T  34966675 tatgtcattcaagcaaa 34966659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 46593285 - 46593169
Alignment:
Q  72 gaattcaagaagaaaccctatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagaaattgagtatagaattcgttt 171  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  46593285 gaattcaagaagaaaccctatatcaattttgaatttaatttgcctttcaacaaggaatcataatcgaaaaaaggttttcaattgaatatagaattcgttt 46593186  T
Q  172 tatgtcattcaagcaaa 188  Q
    |||||||||||||||||    
T  46593185 tatgtcattcaagcaaa 46593169  T

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Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 37467198 - 37467312
Alignment:
Q  73 aattcaagaagaaaccctatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagaaattgagtatagaattcgtttt 172  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||     
T  37467198 aattcaagaagaaaccccatatcaattttgaatttaatttttctttcaacaaggaatcataatcgaaaaaaggttagtaattgagtatataattcgtttc 37467297  T
Q  173 atgtcattcaagcaa 187  Q
    |||||||||||||||    
T  37467298 atgtcattcaagcaa 37467312  T

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Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 49837764 - 49837871
Alignment:
Q  81 aagaaaccctatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagaaattgagtatagaattcgttttatgtcatt 180  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  49837764 aagaaaccccatatcaattttgaatttaatttgtctttcaacaaagaatcataatcgaaaaaaggttagcaattgagtattgaattcgttttatgtcatt 49837863  T
Q  181 caagcaaa 188  Q
    ||||||||    
T  49837864 caagcaaa 49837871  T

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Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 7439277 - 7439161
Alignment:
Q  72 gaattcaagaagaaaccctatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagaaattgagtatagaattcgttt 171  Q
    |||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7439277 gaattcaagaagaaaccccatatcgattttgaatttaatttgtgtttcaacaaggaatcataatcgaaaaaaggttagcaattgagtatagaattcgttt 7439178  T
Q  172 tatgtcattcaagcaaa 188  Q
    |||||||||||||||||    
T  7439177 tatgtcattcaagcaaa 7439161  T

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Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 29261002 - 29260887
Alignment:
Q  73 aattcaagaagaaaccctatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagaaattgagtatagaattcgtttt 172  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29261002 aattcaagaagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattgagtatagaattcgtttt 29260903  T
Q  173 atgtcattcaagcaaa 188  Q
     | |||||||||||||    
T  29260902 ctttcattcaagcaaa 29260887  T

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Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 15286799 - 15286702
Alignment:
Q  91 atatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagaaattgagtatagaattcgttttatgtcattcaagcaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  15286799 atatcaattttgaatttaatttgtctttcaacaaggaatcataatcaaaaagaggttagcaattgagtatagaattcgttttatgtcattcaagcaaa 15286702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 15791158 - 15791042
Alignment:
Q  72 gaattcaagaagaaaccctatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagaaattgagtatagaattcgttt 171  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  15791158 gaattcaagaagaaacaccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattgagtatataatttgttt 15791059  T
Q  172 tatgtcattcaagcaaa 188  Q
    |||||||||||||||||    
T  15791058 tatgtcattcaagcaaa 15791042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 36283257 - 36283142
Alignment:
Q  73 aattcaagaagaaaccctatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagaaattgagtatagaattcgtttt 172  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  36283257 aattcaagaagaaaccccatatcaattttgaatttaatttgtctttcaagaaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgtttt 36283158  T
Q  173 atgtcattcaagcaaa 188  Q
    |||| |||||||||||    
T  36283157 atgtaattcaagcaaa 36283142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 41893093 - 41893169
Alignment:
Q  112 tgtctttcaacaaggaatcataatcgaaaaaaggttagaaattgagtatagaattcgttttatgtcattcaagcaaa 188  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41893093 tgtctttcaacaaggaatcataatcaaaaaaaggttagcaattgagtatagaattcgttttatgtcattcaagcaaa 41893169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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