View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15484_low_1 (Length: 751)

Name: NF15484_low_1
Description: NF15484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15484_low_1
NF15484_low_1
[»] chr1 (13 HSPs)
chr1 (305-734)||(31979066-31979504)
chr1 (1-234)||(31979575-31979809)
chr1 (101-137)||(19908105-19908141)
chr1 (101-149)||(27520265-27520313)
chr1 (313-384)||(7454568-7454639)
chr1 (103-162)||(12930356-12930415)
chr1 (101-148)||(34444532-34444579)
chr1 (306-380)||(4806789-4806863)
chr1 (306-384)||(34632162-34632240)
chr1 (101-163)||(41560405-41560467)
chr1 (101-163)||(43375642-43375704)
chr1 (101-189)||(5338889-5338978)
chr1 (339-384)||(5869790-5869835)
[»] chr7 (18 HSPs)
chr7 (313-384)||(46849097-46849168)
chr7 (318-383)||(3281524-3281589)
chr7 (319-384)||(32062029-32062094)
chr7 (101-161)||(21517426-21517486)
chr7 (109-163)||(26763218-26763272)
chr7 (311-384)||(28200375-28200448)
chr7 (318-374)||(1513650-1513706)
chr7 (103-163)||(36101821-36101881)
chr7 (19-67)||(36652085-36652133)
chr7 (101-148)||(37976411-37976458)
chr7 (103-161)||(3457539-3457597)
chr7 (101-163)||(9210748-9210810)
chr7 (101-163)||(28627977-28628039)
chr7 (25-67)||(32631675-32631717)
chr7 (101-163)||(35922429-35922491)
chr7 (306-356)||(43404307-43404357)
chr7 (19-77)||(44855303-44855361)
chr7 (101-138)||(45601652-45601689)
[»] chr4 (14 HSPs)
chr4 (306-384)||(43354228-43354306)
chr4 (318-384)||(48171886-48171952)
chr4 (328-381)||(1144934-1144987)
chr4 (108-160)||(20601699-20601751)
chr4 (108-160)||(46749730-46749782)
chr4 (306-371)||(36720671-36720736)
chr4 (328-384)||(19997354-19997410)
chr4 (108-143)||(20821072-20821107)
chr4 (101-148)||(34208328-34208375)
chr4 (101-140)||(41340614-41340653)
chr4 (101-163)||(5306472-5306534)
chr4 (311-384)||(12712007-12712081)
chr4 (318-383)||(41520959-41521024)
chr4 (102-163)||(53540467-53540528)
[»] chr5 (12 HSPs)
chr5 (311-384)||(23422858-23422930)
chr5 (101-163)||(20367069-20367131)
chr5 (329-384)||(3052295-3052350)
chr5 (101-148)||(43475415-43475462)
chr5 (101-163)||(418078-418140)
chr5 (101-163)||(9235223-9235285)
chr5 (19-77)||(16347509-16347567)
chr5 (103-161)||(35685959-35686017)
chr5 (19-77)||(38685060-38685118)
chr5 (313-382)||(29560882-29560951)
chr5 (307-356)||(33995784-33995833)
chr5 (103-152)||(41808100-41808149)
[»] chr8 (16 HSPs)
chr8 (328-384)||(35700385-35700441)
chr8 (102-141)||(28169569-28169608)
chr8 (101-163)||(21425222-21425284)
chr8 (101-163)||(29520825-29520887)
chr8 (101-163)||(30559869-30559931)
chr8 (316-353)||(7453766-7453803)
chr8 (311-383)||(11708984-11709056)
chr8 (328-384)||(33996084-33996140)
chr8 (101-163)||(490511-490573)
chr8 (313-383)||(23159441-23159511)
chr8 (101-163)||(28269724-28269785)
chr8 (19-77)||(36545242-36545300)
chr8 (101-163)||(43904709-43904771)
chr8 (101-138)||(12966383-12966420)
chr8 (108-161)||(25288947-25289000)
chr8 (108-161)||(25300282-25300335)
[»] chr3 (11 HSPs)
chr3 (106-161)||(40106666-40106721)
chr3 (101-163)||(29601068-29601130)
chr3 (101-163)||(45289135-45289197)
chr3 (324-384)||(38379040-38379100)
chr3 (328-384)||(48022304-48022360)
chr3 (109-152)||(48712130-48712173)
chr3 (101-163)||(19737160-19737222)
chr3 (101-163)||(23534614-23534676)
chr3 (101-163)||(32170581-32170643)
chr3 (311-356)||(2078238-2078283)
chr3 (101-138)||(44571603-44571640)
[»] chr2 (10 HSPs)
chr2 (311-377)||(42090897-42090963)
chr2 (311-384)||(17142828-17142901)
chr2 (106-163)||(43573174-43573231)
chr2 (19-67)||(38429977-38430025)
chr2 (101-163)||(9496042-9496104)
chr2 (101-163)||(19336937-19336999)
chr2 (101-138)||(11412883-11412920)
chr2 (307-352)||(14483248-14483293)
chr2 (102-163)||(18959088-18959149)
chr2 (311-384)||(31815877-31815950)
[»] chr6 (8 HSPs)
chr6 (103-163)||(34549-34609)
chr6 (19-67)||(35043582-35043630)
chr6 (310-384)||(4826287-4826361)
chr6 (19-77)||(7133839-7133897)
chr6 (19-77)||(7136762-7136820)
chr6 (311-384)||(788864-788937)
chr6 (311-384)||(5632132-5632205)
chr6 (311-356)||(12412275-12412320)
[»] scaffold0045 (1 HSPs)
scaffold0045 (19-68)||(86749-86798)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 305 - 734
Target Start/End: Complemental strand, 31979504 - 31979066
Alignment:
Q  305 cagtcttcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccacnnnnnnnn-----cgtaatt 399  Q
    ||||| |||||||||||||||| |||||||||||||| ||||||||||||||  || | |||||||||||| ||||||||             |||||||    
T  31979504 cagtcctcgtgaacttaacttagttggtagagacaatatatattatatgcaaggtttggagttcaaaccccaaccaccacaaaaaaaaaaaagcgtaatt 31979405  T
Q  400 caatcttataagtttttcaatatgcataacaacgaactaatttcgatttcacttggaagaagataattattttgattagcaacacttgctgcgtttgaat 499  Q
    |||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  31979404 caattttctaagttttacaatatgcataacaacgtactaatttcgatttcacttggaagaagctaattattttgattagtaacacttgctgcgtttgaat 31979305  T
Q  500 gatatatgatttgaccatgttcataagtgaagataatttttactttataagttggtcttgtatatattgagttatgccttattcaaattctaatatagta 599  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  31979304 gatatatgatttgaccatgttcataagcgaagataatttttactttataagttggtcttgtatatattgagttagaccttagtcaaattctaatatagta 31979205  T
Q  600 taaaaacttatttaagatttaatggacacttgctatcatatcatcactctaggaaccacgtatgaggtca-----cacatatccaatgtatttataaata 694  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||| |||||||     ||||| ||||||||||||||||| |    
T  31979204 taaaaacttatttaagattcaatggacacttgctatcatatcatcacttta-gaaccacgtacgaggtcagacttcacatgtccaatgtatttataaaaa 31979106  T
Q  695 cattgtcaatgtatttataaataaagttaatcttattgtt 734  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31979105 cattgtcaatgtatttataaataaagttaatcttattgtt 31979066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 31979809 - 31979575
Alignment:
Q  1 ttataaatagtaaagagggtagaccaaatagaggatagtcaggttaaaagaagtagatgaagacctagaaatactataataagaactattaannnnnnnn 100  Q
    |||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||            
T  31979809 ttataagtagtaaagagggtagatcaaatagaggatagtcaggttacaagaggtagatgaagacctaaaaatactataataagaactattaatttttttt 31979710  T
Q  101 -agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatccaggtaccaacctcgcttgatgagataaaatttagttg 199  Q
     ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31979709 tagagattaatgagctggattcaaatatggtttatgataaaacgttatgacataatctgatccaggtaccaacctcgcttgatgtgataaaatttagttg 31979610  T
Q  200 ttgttgtggtggtgatgtgagaagttcaaatagac 234  Q
    |||||||||||||||||||| ||||||||||||||    
T  31979609 ttgttgtggtggtgatgtgataagttcaaatagac 31979575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 19908141 - 19908105
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgat 137  Q
    |||||||||||||||||||||||||||| ||||||||    
T  19908141 agagattaatgagttggattcaaatatggtttatgat 19908105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 27520313 - 27520265
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatga 149  Q
    ||||||||||||| ||||| |||||||||||||||||| ||| ||||||    
T  27520313 agagattaatgagctggatccaaatatgatttatgatagaacattatga 27520265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 7454639 - 7454568
Alignment:
Q  313 gtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||||||||||| ||||||||  ||||||||||| |||||||||  |||    |||||||||||||||||||    
T  7454639 gtgaacttaactcaattggtatcgacaatgtataatatatgcaaggttcatgattcaaaccccgaccaccac 7454568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 12930415 - 12930356
Alignment:
Q  103 agattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcc 162  Q
    |||||| |||||||||| |||||||||||||||||| ||  ||||||| |||| ||||||    
T  12930415 agattagtgagttggatccaaatatgatttatgatagaagattatgacgtaatttgatcc 12930356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 34444532 - 34444579
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatg 148  Q
    ||||||||||||||||||| |||||||| ||||| ||||||| |||||    
T  34444532 agagattaatgagttggatccaaatatggtttataataaaacattatg 34444579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 4806863 - 4806789
Alignment:
Q  306 agtcttcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgacca 380  Q
    ||||| ||||||||||| | | ||||||||||||||||||| |||||| ||  || || ||||||||| ||||||    
T  4806863 agtctccgtgaacttaattcagttggtagagacaatgtataatatatgtaaggtttgaggttcaaacctcgacca 4806789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 306 - 384
Target Start/End: Original strand, 34632162 - 34632240
Alignment:
Q  306 agtcttcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||| |||||| |||| || | |||||| |||||||||||| ||||||||| || ||| ||||||| |||| |||||||    
T  34632162 agtcctcgtgagcttagctcagttggtatagacaatgtataatatatgcaagatccgaggttcaaatcccggccaccac 34632240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 41560405 - 41560467
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    ||||||||||||||||||| ||||||||  |||||||| ||| ||||| | |||| |||||||    
T  41560405 agagattaatgagttggatccaaatatgggttatgatagaacattatggcgtaatttgatcca 41560467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 43375704 - 43375642
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    ||||||||||||||||||   ||||||| || |||||| ||| |||||||||||| |||||||    
T  43375704 agagattaatgagttggaccgaaatatggttcatgatagaacattatgacataatttgatcca 43375642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 5338889 - 5338978
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatccaggta-ccaacctcgcttgatgagataa 189  Q
    |||||||||||||||||||  |||| |||||||| ||| ||| ||||| | |||| ||||||| ||| |||||||| |||  ||||||||    
T  5338889 agagattaatgagttggatcgaaatgtgatttattatagaacattatggcgtaatttgatccatgtagccaacctcacttagtgagataa 5338978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 5869790 - 5869835
Alignment:
Q  339 aatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||| ||| ||||||||| ||||| |||||||||||||||||||||    
T  5869790 aatgcataatatatgcaagattcggagttcaaaccccgaccaccac 5869835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 46849168 - 46849097
Alignment:
Q  313 gtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||||||||| ||||||||||||||||||| ||| |||||| ||| || | |||||||||||||||||||||    
T  46849168 gtgaacttaatttaattggtagagacaatgcataatatatgtaaagtttggagttcaaaccccgaccaccac 46849097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 3281589 - 3281524
Alignment:
Q  318 cttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccacca 383  Q
    |||||||||||||| |||||||||||||| |||||| || ||||| |||| |||||||||| ||||    
T  3281589 cttaacttaattggcagagacaatgtataatatatgtaagattcggagtttaaaccccgactacca 3281524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 32062029 - 32062094
Alignment:
Q  319 ttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||||| | ||||||||||||||||||| |||||||||||||||   |||||||||| ||||||||    
T  32062029 ttaactcagttggtagagacaatgtataatatatgcaaaattcgggattcaaaccccaaccaccac 32062094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 21517486 - 21517426
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatc 161  Q
    |||||||||| |||||||| |||||||||||||||||| ||| ||||||| |||| |||||    
T  21517486 agagattaataagttggatccaaatatgatttatgatataacattatgacgtaatttgatc 21517426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 26763272 - 26763218
Alignment:
Q  109 atgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||||||||||| ||||||||||||||||| ||||||  |||||||| |||||||    
T  26763272 atgagttggattgaaatatgatttatgatagaacgttcggacataatttgatcca 26763218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 28200448 - 28200375
Alignment:
Q  311 tcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||||| ||||||| | |||||||  |||||  ||| |||||||||||||||| |||||||| |||||||||||    
T  28200448 tcgtgagcttaactcagttggtaggaacaatacataatatatgcaaaattcgaggttcaaactccgaccaccac 28200375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 1513650 - 1513706
Alignment:
Q  318 cttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccc 374  Q
    ||||||||| |||  ||||||||||||||||||||| ||| || |||||||||||||    
T  1513650 cttaacttagttgacagagacaatgtatattatatgtaaagtttgaagttcaaaccc 1513706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 36101881 - 36101821
Alignment:
Q  103 agattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||||||||||||||||  ||||||| ||||||||| ||| ||||||| |||| |||||||    
T  36101881 agattaatgagttggatcaaaatatggtttatgatagaacattatgacgtaatttgatcca 36101821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 36652085 - 36652133
Alignment:
Q  19 gtagaccaaatagaggatagtcaggttaaaagaagtagatgaagaccta 67  Q
    ||||| ||||||||||||||||| ||||||||| ||||| |||||||||    
T  36652085 gtagatcaaatagaggatagtcaagttaaaagaggtagaggaagaccta 36652133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 37976411 - 37976458
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatg 148  Q
    ||||||||||||||||||| |||||||| ||||||||| ||| |||||    
T  37976411 agagattaatgagttggatccaaatatggtttatgatagaacattatg 37976458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 3457539 - 3457597
Alignment:
Q  103 agattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatc 161  Q
    |||||||||||||||||  ||||||  ||||||||||||| ||||| |||||| |||||    
T  3457539 agattaatgagttggatcaaaatattgtttatgataaaacattatggcataatttgatc 3457597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 9210810 - 9210748
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||| |||||||||||||| |||||||| ||||||||| ||| ||||| | |||| |||||||    
T  9210810 agaggttaatgagttggatccaaatatggtttatgatacaacattatggcgtaatttgatcca 9210748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 28628039 - 28627977
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    ||||||||||||||||||| ||||| || ||||||||| ||| ||||| | |||| |||||||    
T  28628039 agagattaatgagttggatgcaaatgtggtttatgatagaacattatggcgtaatttgatcca 28627977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 32631675 - 32631717
Alignment:
Q  25 caaatagaggatagtcaggttaaaagaagtagatgaagaccta 67  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||    
T  32631675 caaatggaggatagtcaggttaaaagaggtagaggaagaccta 32631717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 35922429 - 35922491
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||| ||||||||||| ||  ||||||||||||||||| ||| ||||||| |||| |||||||    
T  35922429 agaggttaatgagttgaatctaaatatgatttatgatagaacattatgacctaatttgatcca 35922491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 43404357 - 43404307
Alignment:
Q  306 agtcttcgtgaacttaacttaattggtagagacaatgtatattatatgcaa 356  Q
    |||| ||||||| |||||| |||| |||||||||||||||| |||||||||    
T  43404357 agtcatcgtgaatttaactcaattagtagagacaatgtatagtatatgcaa 43404307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 44855361 - 44855303
Alignment:
Q  19 gtagaccaaatagaggatagtcaggttaaaagaagtagatgaagacctagaaatactat 77  Q
    ||||| ||||| ||||| ||||| ||||||||||||||| |||||||||| || |||||    
T  44855361 gtagatcaaatggaggagagtcaagttaaaagaagtagaggaagacctaggaaaactat 44855303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 45601652 - 45601689
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgata 138  Q
    |||||||||||||||||||  |||||||||||||||||    
T  45601652 agagattaatgagttggatcaaaatatgatttatgata 45601689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 43354306 - 43354228
Alignment:
Q  306 agtcttcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||||||||||  |||||| |||||||| |||||||| ||||||||| ||| ||| || |||||||||||||| |||||    
T  43354306 agtcttcgtgagtttaactcaattggtatagacaatgcatattatatacaagatttgaggttcaaaccccgacgaccac 43354228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 318 - 384
Target Start/End: Original strand, 48171886 - 48171952
Alignment:
Q  318 cttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    ||||||| | ||||||||||||||||||| |||||||||  ||| | ||||||||||||||||||||    
T  48171886 cttaactcagttggtagagacaatgtataatatatgcaaggttctaggttcaaaccccgaccaccac 48171952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 1144934 - 1144987
Alignment:
Q  328 ttggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccac 381  Q
    ||||||||||||||||||| |||||| |||||| |||||||||||| |||||||    
T  1144934 ttggtagagacaatgtataatatatgtaaaatttgaagttcaaacctcgaccac 1144987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 20601751 - 20601699
Alignment:
Q  108 aatgagttggattcaaatatgatttatgataaaacgttatgacataatctgat 160  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||    
T  20601751 aatgagttggattcaaatatgatttatgatagaacattatgacgtaatttgat 20601699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 46749730 - 46749782
Alignment:
Q  108 aatgagttggattcaaatatgatttatgataaaacgttatgacataatctgat 160  Q
    ||||||||||||||||||||||||||||||||||  ||||||| |||| ||||    
T  46749730 aatgagttggattcaaatatgatttatgataaaatattatgacgtaatttgat 46749782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 371
Target Start/End: Original strand, 36720671 - 36720736
Alignment:
Q  306 agtcttcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaa 371  Q
    |||| |||||||||||||| |||||||||  |||||||||| ||||||||| ||||| || |||||    
T  36720671 agtcctcgtgaacttaactcaattggtaggaacaatgtataatatatgcaagattcggagctcaaa 36720736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 19997410 - 19997354
Alignment:
Q  328 ttggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    ||||||||||||||| ||| |||||||||| ||||  |||||||| |||||||||||    
T  19997410 ttggtagagacaatgcataatatatgcaaagttcggggttcaaactccgaccaccac 19997354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 20821107 - 20821072
Alignment:
Q  108 aatgagttggattcaaatatgatttatgataaaacg 143  Q
    ||||||||||||||||||||||||||||||| ||||    
T  20821107 aatgagttggattcaaatatgatttatgatagaacg 20821072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 34208375 - 34208328
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatg 148  Q
    ||||||||||||||||||| |||||||| ||||||||| ||| |||||    
T  34208375 agagattaatgagttggatccaaatatggtttatgatagaacattatg 34208328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 41340653 - 41340614
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaa 140  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  41340653 agagattaatgagttggatccaaatataatttatgataaa 41340614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 5306472 - 5306534
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    ||||||||||||||||||| |||||||| ||||||| | ||| ||||| | |||| |||||||    
T  5306472 agagattaatgagttggatccaaatatggtttatgacataacattatggcgtaatttgatcca 5306534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 12712081 - 12712007
Alignment:
Q  311 tcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaac-cccgaccaccac 384  Q
    |||||||||||||| | ||| ||||||||||| ||| ||||||||| ||| | ||||||||| |||||| |||||    
T  12712081 tcgtgaacttaactcatttgatagagacaatgcataatatatgcaagatttggagttcaaactcccgactaccac 12712007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 41520959 - 41521024
Alignment:
Q  318 cttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccacca 383  Q
    ||||||| | ||||||||||||||| ||| |||||||||  ||| | |||||||| ||||||||||    
T  41520959 cttaactcagttggtagagacaatgcataatatatgcaaggttcaaggttcaaactccgaccacca 41521024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 53540467 - 53540528
Alignment:
Q  102 gagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||||||||||||||||   ||||||| ||||||||| ||| ||||| |||||| |||||||    
T  53540467 gagattaatgagttggacaaaaatatggtttatgatagaacattatggcataatttgatcca 53540528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 23422930 - 23422858
Alignment:
Q  311 tcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||||||||||||| |||||||||| |||||| ||| |||||||||| ||||| |||||||| ||| |||||||    
T  23422930 tcgtgaacttaactcaattggtaga-acaatgcataatatatgcaaagttcgatgttcaaactccggccaccac 23422858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 20367069 - 20367131
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    ||||||||||||||||||| |||||||| ||||||| | ||| ||||||| |||| |||||||    
T  20367069 agagattaatgagttggatccaaatatggtttatgacataacattatgacgtaatttgatcca 20367131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 3052295 - 3052350
Alignment:
Q  329 tggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||||| ||||||||||| |||||||||  ||||| ||||||||| ||||||||||    
T  3052295 tggtagggacaatgtataatatatgcaaggttcgaggttcaaacctcgaccaccac 3052350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 43475415 - 43475462
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatg 148  Q
    |||||||||||||||||||  |||||||||||||| || |||||||||    
T  43475415 agagattaatgagttggatcgaaatatgatttatggtagaacgttatg 43475462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 418140 - 418078
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    ||||||||||||||||||| ||||| || ||||||||| ||| ||||| | |||| |||||||    
T  418140 agagattaatgagttggatccaaatgtggtttatgatagaacattatggcgtaatttgatcca 418078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 9235223 - 9235285
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    ||||||||||||| |||||  ||||||| ||||||||| ||| ||||| |||||| |||||||    
T  9235223 agagattaatgagctggatcgaaatatggtttatgatagaacattatggcataatttgatcca 9235285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 16347567 - 16347509
Alignment:
Q  19 gtagaccaaatagaggatagtcaggttaaaagaagtagatgaagacctagaaatactat 77  Q
    ||||| ||||| ||||| ||||||||||||||| ||||| |||||||||| || |||||    
T  16347567 gtagatcaaatggaggagagtcaggttaaaagaggtagaggaagacctaggaaaactat 16347509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 35685959 - 35686017
Alignment:
Q  103 agattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatc 161  Q
    ||||||||||| ||||| ||||||| |||||||| ||||| ||||| |||||| |||||    
T  35685959 agattaatgagatggatgcaaatataatttatgacaaaacattatgccataatttgatc 35686017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 38685060 - 38685118
Alignment:
Q  19 gtagaccaaatagaggatagtcaggttaaaagaagtagatgaagacctagaaatactat 77  Q
    ||||| ||||| ||||| ||||||||||||||| ||||| |||||||||| || |||||    
T  38685060 gtagatcaaatggaggagagtcaggttaaaagaggtagaggaagacctaggaaaactat 38685118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 382
Target Start/End: Complemental strand, 29560951 - 29560882
Alignment:
Q  313 gtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccacc 382  Q
    |||||||||||| ||||||||   |||||||||| ||||||||| |||||| |||| ||| |||| ||||    
T  29560951 gtgaacttaactcaattggtaacaacaatgtataatatatgcaagattcgaggttcgaactccgaacacc 29560882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 33995784 - 33995833
Alignment:
Q  307 gtcttcgtgaacttaacttaattggtagagacaatgtatattatatgcaa 356  Q
    |||||||||| ||||||| ||||||||| |||||||||||  ||||||||    
T  33995784 gtcttcgtgagcttaactcaattggtagggacaatgtataaaatatgcaa 33995833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 41808100 - 41808149
Alignment:
Q  103 agattaatgagttggattcaaatatgatttatgataaaacgttatgacat 152  Q
    |||||||||||||||||  ||||||||| ||||||| ||| |||||||||    
T  41808100 agattaatgagttggatataaatatgatgtatgatagaacattatgacat 41808149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 35700441 - 35700385
Alignment:
Q  328 ttggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    ||||||||||||||| ||| |||||||||||||||  |||||||| |||||||||||    
T  35700441 ttggtagagacaatgcataatatatgcaaaattcggggttcaaactccgaccaccac 35700385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 28169569 - 28169608
Alignment:
Q  102 gagattaatgagttggattcaaatatgatttatgataaaa 141  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  28169569 gagattaatgagttggattcaaatatggtttatgataaaa 28169608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 21425222 - 21425284
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||||||||||||||||||  ||||||||||||||||| | | ||||| |||||| |||||||    
T  21425222 agagattaatgagttggatcgaaatatgatttatgatagaccattatggcataatttgatcca 21425284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 29520825 - 29520887
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    ||||||||||||||||||| |||||||| ||||||||| ||| ||||| | |||| |||||||    
T  29520825 agagattaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatcca 29520887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 30559869 - 30559931
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    ||||||||||||||||||| || ||||| ||||||||| ||| ||||||| |||| |||||||    
T  30559869 agagattaatgagttggatccatatatggtttatgatagaacattatgacgtaatttgatcca 30559931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 7453803 - 7453766
Alignment:
Q  316 aacttaacttaattggtagagacaatgtatattatatg 353  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  7453803 aacttaacttaattggtagagacaatgtataatatatg 7453766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 383
Target Start/End: Original strand, 11708984 - 11709056
Alignment:
Q  311 tcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccacca 383  Q
    |||||| |||| || | ||||||| ||||||| ||| |||||||||  | |||||||||||||||||||||||    
T  11708984 tcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccgaagttcaaaccccgaccacca 11709056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 33996084 - 33996140
Alignment:
Q  328 ttggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    ||||||||||||||| ||| |||||||||| ||||  |||||||| |||||||||||    
T  33996084 ttggtagagacaatgcataatatatgcaaagttcggggttcaaactccgaccaccac 33996140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 490511 - 490573
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    ||||||| ||||||||||| |||||||| ||||||||| ||| ||||| | |||| |||||||    
T  490511 agagattgatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatcca 490573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 23159441 - 23159511
Alignment:
Q  313 gtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccacca 383  Q
    |||||||||||| ||||  ||  ||||||| ||| ||||||||| |||||  |||||||||||||||||||    
T  23159441 gtgaacttaactcaattcatatggacaatgcataatatatgcaagattcggggttcaaaccccgaccacca 23159511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 28269785 - 28269724
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||| |||||||||||||| ||||| | ||| |||||| |||||||||||||||| |||||||    
T  28269785 agaggttaatgagttggatccaaatttaatt-atgatataacgttatgacataatttgatcca 28269724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 36545242 - 36545300
Alignment:
Q  19 gtagaccaaatagaggatagtcaggttaaaagaagtagatgaagacctagaaatactat 77  Q
    ||||| ||||| ||||||||||| ||||||||| ||||| |||||||||| || |||||    
T  36545242 gtagatcaaatggaggatagtcaagttaaaagacgtagaggaagacctaggaaaactat 36545300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 43904771 - 43904709
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||||||||||||||||||  ||||||| ||||||||| ||| ||||| | |||| |||||||    
T  43904771 agagattaatgagttggatctaaatatggtttatgatagaacattatggcgtaatttgatcca 43904709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 12966420 - 12966383
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgata 138  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  12966420 agagattaatgagttgaattcaaatatggtttatgata 12966383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 25288947 - 25289000
Alignment:
Q  108 aatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatc 161  Q
    |||||||||||| |||||||| ||||||||| |||  ||||||||||| |||||    
T  25288947 aatgagttggatccaaatatggtttatgatataactctatgacataatttgatc 25289000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 25300282 - 25300335
Alignment:
Q  108 aatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatc 161  Q
    |||||||||||| |||||||| ||||||||| |||  ||||||||||| |||||    
T  25300282 aatgagttggatccaaatatggtttatgatataacactatgacataatttgatc 25300335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 40106721 - 40106666
Alignment:
Q  106 ttaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatc 161  Q
    |||||||||||||| |||||||| ||||||||| ||| |||||||||||| |||||    
T  40106721 ttaatgagttggatccaaatatggtttatgatagaacattatgacataatttgatc 40106666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 29601068 - 29601130
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||||||||||||||||||||||||||  ||||||||| ||| ||||||  |||| |||||||    
T  29601068 agagattaatgagttggattcaaatatagtttatgatagaacattatgatgtaatttgatcca 29601130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 45289197 - 45289135
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    ||||||||||||||||||| |||||||| ||||||||| ||| ||||  |||||| |||||||    
T  45289197 agagattaatgagttggatccaaatatggtttatgatagaacattatagcataatttgatcca 45289135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 384
Target Start/End: Original strand, 38379040 - 38379100
Alignment:
Q  324 ttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    ||||||||||||||||||  ||| |||||| || ||||| |||||||||||| ||||||||    
T  38379040 ttaattggtagagacaatacataatatatgtaagattcggagttcaaaccccaaccaccac 38379100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 48022360 - 48022304
Alignment:
Q  328 ttggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    ||||||||||||||| ||| |||||||||| ||||  |||||||| |||||||||||    
T  48022360 ttggtagagacaatgcataatatatgcaaagttcggggttcaaactccgaccaccac 48022304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 48712173 - 48712130
Alignment:
Q  109 atgagttggattcaaatatgatttatgataaaacgttatgacat 152  Q
    |||||||||||||||||||| ||||||||| ||| |||||||||    
T  48712173 atgagttggattcaaatatggtttatgatataacattatgacat 48712130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 19737160 - 19737222
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||||||||||||||||||   |||||| ||||||||||||| |||||  ||||| |||||||    
T  19737160 agagattaatgagttggatctcaatatggtttatgataaaacattatggtataatttgatcca 19737222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 23534676 - 23534614
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||||||||||||||||| |  |||||||||||||||| ||| ||||| | |||| |||||||    
T  23534676 agagattaatgagttggactgtaatatgatttatgatagaacattatggcgtaatttgatcca 23534614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 32170581 - 32170643
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||||||||| ||||||||  ||||||| | ||||||| ||| |||||||||||| |||||||    
T  32170581 agagattaataagttggatagaaatatggtctatgatataacattatgacataatttgatcca 32170643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 356
Target Start/End: Original strand, 2078238 - 2078283
Alignment:
Q  311 tcgtgaacttaacttaattggtagagacaatgtatattatatgcaa 356  Q
    |||||||||||||| | ||||||||||||||| ||| |||||||||    
T  2078238 tcgtgaacttaactcagttggtagagacaatgcataatatatgcaa 2078283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 44571603 - 44571640
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgata 138  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  44571603 agagattaatgagttggatccaaatatggtttatgata 44571640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 311 - 377
Target Start/End: Original strand, 42090897 - 42090963
Alignment:
Q  311 tcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccga 377  Q
    |||||||||||||| |||||||||||| |||||||  |||||| |||||| | | ||||||||||||    
T  42090897 tcgtgaacttaactcaattggtagagataatgtatgatatatgtaaaatttggaattcaaaccccga 42090963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 17142828 - 17142901
Alignment:
Q  311 tcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||||| |||| || | ||||||| ||||||||||| |||||||||| |  | |||||||||||||||||||||    
T  17142828 tcgtgagcttagctcagttggtagtgacaatgtataatatatgcaaagtctggagttcaaaccccgaccaccac 17142901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 43573231 - 43573174
Alignment:
Q  106 ttaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||||||||||||| |||||||||||||||||  ||||||||| | |||| |||||||    
T  43573231 ttaatgagttggatccaaatatgatttatgatcgaacgttatggcgtaatttgatcca 43573174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 38429977 - 38430025
Alignment:
Q  19 gtagaccaaatagaggatagtcaggttaaaagaagtagatgaagaccta 67  Q
    ||||| ||||| ||||| ||||||||||||||||||||| |||||||||    
T  38429977 gtagatcaaatggaggagagtcaggttaaaagaagtagaggaagaccta 38430025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 9496042 - 9496104
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||| |||||||||||||| |||||||| ||||||||| ||| ||||| | |||| |||||||    
T  9496042 agaggttaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatcca 9496104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 19336999 - 19336937
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||||||||||||||||||  ||||||| ||||||||| ||| ||||| | |||| |||||||    
T  19336999 agagattaatgagttggatcgaaatatggtttatgatagaacattatggcgtaatttgatcca 19336937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 11412883 - 11412920
Alignment:
Q  101 agagattaatgagttggattcaaatatgatttatgata 138  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  11412883 agagattaatgagttggatccaaatatggtttatgata 11412920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 14483293 - 14483248
Alignment:
Q  307 gtcttcgtgaacttaacttaattggtagagacaatgtatattatat 352  Q
    |||||||||||||||||| ||||  ||||||||||||||| |||||    
T  14483293 gtcttcgtgaacttaactcaattactagagacaatgtataatatat 14483248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 18959088 - 18959149
Alignment:
Q  102 gagattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    ||||||||||||||||||  ||||||| | ||||||| ||| ||||| |||||| |||||||    
T  18959088 gagattaatgagttggatcaaaatatggtctatgatagaacattatggcataatttgatcca 18959149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 31815950 - 31815877
Alignment:
Q  311 tcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||||| ||||||| | ||||||| ||||||| ||| |||||||||  | ||  ||||||||||||||||||||    
T  31815950 tcgtgagcttaactcagttggtagggacaatgcataatatatgcaaggtccggggttcaaaccccgaccaccac 31815877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 34609 - 34549
Alignment:
Q  103 agattaatgagttggattcaaatatgatttatgataaaacgttatgacataatctgatcca 163  Q
    |||||||||||||||||| ||||||| ||||||||| ||| ||||| | |||| |||||||    
T  34609 agattaatgagttggattgaaatatggtttatgatagaacattatggcgtaatttgatcca 34549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 35043630 - 35043582
Alignment:
Q  19 gtagaccaaatagaggatagtcaggttaaaagaagtagatgaagaccta 67  Q
    ||||| ||||| || || |||||||||||||||||||||||||||||||    
T  35043630 gtagatcaaatggacgagagtcaggttaaaagaagtagatgaagaccta 35043582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 4826287 - 4826361
Alignment:
Q  310 ttcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    ||||||||||||  | ||||||||||||||||| ||| |||||| ||  ||||| |||||||| ||| |||||||    
T  4826287 ttcgtgaacttagttcaattggtagagacaatgcataatatatgtaaggttcgaggttcaaactccggccaccac 4826361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 7133839 - 7133897
Alignment:
Q  19 gtagaccaaatagaggatagtcaggttaaaagaagtagatgaagacctagaaatactat 77  Q
    ||||| ||||| ||||| ||||| ||||||||| ||||| ||||||||||||| |||||    
T  7133839 gtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctagaaaaactat 7133897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 7136762 - 7136820
Alignment:
Q  19 gtagaccaaatagaggatagtcaggttaaaagaagtagatgaagacctagaaatactat 77  Q
    ||||| ||||| ||||| ||||| ||||||||| ||||| ||||||||||||| |||||    
T  7136762 gtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctagaaaaactat 7136820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 788864 - 788937
Alignment:
Q  311 tcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||||| |||| || | ||||||  ||||||| ||| |||||||||  |||| |||||||||||||||||||||    
T  788864 tcgtgagcttatctcagttggtaaggacaatgcataatatatgcaaggttcggagttcaaaccccgaccaccac 788937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 5632132 - 5632205
Alignment:
Q  311 tcgtgaacttaacttaattggtagagacaatgtatattatatgcaaaattcgaagttcaaaccccgaccaccac 384  Q
    |||||| ||||||| |||||||||  |||||||||| |||||  || |||||  |||| |||||||||||||||    
T  5632132 tcgtgagcttaactcaattggtaggaacaatgtataatatatataagattcggcgttcgaaccccgaccaccac 5632205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 356
Target Start/End: Original strand, 12412275 - 12412320
Alignment:
Q  311 tcgtgaacttaacttaattggtagagacaatgtatattatatgcaa 356  Q
    |||||| ||||||||| ||||||||||||||| ||| |||||||||    
T  12412275 tcgtgagcttaacttagttggtagagacaatgcataatatatgcaa 12412320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 86798 - 86749
Alignment:
Q  19 gtagaccaaatagaggatagtcaggttaaaagaagtagatgaagacctag 68  Q
    ||||| ||||| ||||| ||||||||||||||| ||||||| ||||||||    
T  86798 gtagatcaaatggaggagagtcaggttaaaagaggtagatggagacctag 86749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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