View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15484_low_3 (Length: 489)

Name: NF15484_low_3
Description: NF15484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15484_low_3
NF15484_low_3
[»] chr5 (21 HSPs)
chr5 (12-208)||(5472289-5472486)
chr5 (269-326)||(5472495-5472552)
chr5 (140-235)||(37495056-37495151)
chr5 (142-235)||(13038547-13038640)
chr5 (150-215)||(43442222-43442288)
chr5 (150-235)||(11465000-11465085)
chr5 (159-215)||(8780506-8780562)
chr5 (142-238)||(31288036-31288132)
chr5 (184-235)||(30485881-30485932)
chr5 (174-217)||(38990598-38990641)
chr5 (149-235)||(12398541-12398627)
chr5 (185-235)||(13108542-13108592)
chr5 (444-473)||(5472708-5472737)
chr5 (142-235)||(8484754-8484847)
chr5 (142-235)||(11926595-11926688)
chr5 (178-215)||(25627112-25627149)
chr5 (142-235)||(32059533-32059626)
chr5 (142-235)||(33709594-33709687)
chr5 (149-201)||(16172982-16173034)
chr5 (144-204)||(24255461-24255521)
chr5 (159-207)||(36895453-36895501)
[»] chr8 (26 HSPs)
chr8 (142-234)||(13525569-13525660)
chr8 (142-234)||(13615104-13615195)
chr8 (149-215)||(22200673-22200739)
chr8 (149-219)||(30482560-30482630)
chr8 (142-235)||(41070776-41070868)
chr8 (143-234)||(28964049-28964140)
chr8 (142-235)||(3734716-3734809)
chr8 (142-235)||(27746428-27746521)
chr8 (142-223)||(33585732-33585813)
chr8 (147-215)||(5202203-5202271)
chr8 (139-215)||(32206249-32206325)
chr8 (178-226)||(35690037-35690085)
chr8 (165-215)||(18540339-18540390)
chr8 (185-228)||(25248407-25248450)
chr8 (184-235)||(32879336-32879387)
chr8 (143-217)||(13580014-13580088)
chr8 (149-215)||(16317636-16317702)
chr8 (178-215)||(3174789-3174826)
chr8 (142-199)||(11714948-11715005)
chr8 (144-217)||(12312863-12312936)
chr8 (142-235)||(34237748-34237841)
chr8 (148-235)||(2166720-2166805)
chr8 (184-228)||(4698823-4698867)
chr8 (143-215)||(11956169-11956241)
chr8 (178-226)||(23361622-23361670)
chr8 (150-201)||(36205221-36205273)
[»] chr3 (23 HSPs)
chr3 (139-235)||(51532797-51532893)
chr3 (153-219)||(16140319-16140385)
chr3 (142-215)||(4252509-4252582)
chr3 (122-215)||(55371398-55371491)
chr3 (143-235)||(53234003-53234095)
chr3 (184-235)||(21362996-21363047)
chr3 (143-234)||(27887440-27887531)
chr3 (184-238)||(8958126-8958180)
chr3 (139-197)||(27811999-27812057)
chr3 (142-235)||(4462644-4462737)
chr3 (142-235)||(40133542-40133635)
chr3 (184-235)||(2511390-2511441)
chr3 (150-201)||(10682942-10682993)
chr3 (147-258)||(49029920-49030030)
chr3 (149-235)||(49167074-49167160)
chr3 (150-215)||(4222167-4222233)
chr3 (142-235)||(7470308-7470401)
chr3 (142-235)||(15566592-15566685)
chr3 (142-235)||(26108303-26108396)
chr3 (142-235)||(30807246-30807339)
chr3 (142-235)||(35492922-35493015)
chr3 (159-192)||(48991675-48991708)
chr3 (184-228)||(39041952-39041996)
[»] chr7 (26 HSPs)
chr7 (159-258)||(42814896-42814994)
chr7 (150-215)||(7721395-7721461)
chr7 (142-239)||(28089831-28089928)
chr7 (159-215)||(28647001-28647057)
chr7 (184-238)||(22703543-22703597)
chr7 (142-235)||(2751286-2751379)
chr7 (142-215)||(22696335-22696408)
chr7 (178-226)||(9183164-9183212)
chr7 (143-235)||(11997865-11997957)
chr7 (142-233)||(9718082-9718173)
chr7 (181-215)||(46572194-46572228)
chr7 (149-215)||(47541406-47541472)
chr7 (143-221)||(48199183-48199260)
chr7 (143-219)||(3950897-3950974)
chr7 (142-235)||(7175955-7176048)
chr7 (142-235)||(7275292-7275385)
chr7 (142-235)||(17197043-17197136)
chr7 (142-235)||(22119903-22119996)
chr7 (178-215)||(33222425-33222462)
chr7 (155-215)||(37162334-37162395)
chr7 (142-235)||(40543003-40543096)
chr7 (178-215)||(47824584-47824621)
chr7 (178-226)||(15137608-15137656)
chr7 (184-256)||(22643415-22643486)
chr7 (143-215)||(40332115-40332187)
chr7 (178-226)||(42712013-42712061)
[»] scaffold0020 (1 HSPs)
scaffold0020 (148-235)||(166047-166134)
[»] chr4 (29 HSPs)
chr4 (143-234)||(34835541-34835632)
chr4 (142-235)||(40058945-40059038)
chr4 (139-235)||(33992634-33992730)
chr4 (149-237)||(49287876-49287964)
chr4 (184-235)||(13873388-13873439)
chr4 (149-219)||(25414195-25414265)
chr4 (149-219)||(41621705-41621775)
chr4 (142-235)||(25852225-25852318)
chr4 (142-235)||(34844851-34844944)
chr4 (178-226)||(7949427-7949475)
chr4 (143-215)||(9646329-9646401)
chr4 (184-235)||(5609295-5609346)
chr4 (142-233)||(13584349-13584440)
chr4 (125-235)||(22625163-22625273)
chr4 (179-217)||(39343522-39343560)
chr4 (143-201)||(40252310-40252368)
chr4 (155-205)||(41085050-41085100)
chr4 (142-199)||(12710190-12710247)
chr4 (182-215)||(13015486-13015519)
chr4 (149-198)||(37317404-37317453)
chr4 (149-218)||(43352434-43352503)
chr4 (142-235)||(52983630-52983723)
chr4 (184-256)||(9517714-9517785)
chr4 (149-225)||(21344842-21344918)
chr4 (179-215)||(23333997-23334033)
chr4 (149-225)||(29195120-29195196)
chr4 (142-258)||(32986208-32986323)
chr4 (177-221)||(37172816-37172860)
chr4 (143-235)||(43719158-43719250)
[»] chr6 (18 HSPs)
chr6 (142-235)||(28672078-28672171)
chr6 (149-208)||(17149576-17149635)
chr6 (149-219)||(3869721-3869791)
chr6 (143-217)||(3907553-3907627)
chr6 (142-235)||(11448882-11448975)
chr6 (142-235)||(15360191-15360284)
chr6 (177-222)||(24256799-24256844)
chr6 (143-219)||(33718567-33718643)
chr6 (162-222)||(6691528-6691588)
chr6 (159-219)||(28741950-28742010)
chr6 (143-238)||(11007177-11007272)
chr6 (184-258)||(17081125-17081198)
chr6 (184-225)||(9626093-9626134)
chr6 (143-256)||(9843950-9844062)
chr6 (191-224)||(21004832-21004865)
chr6 (149-225)||(33499492-33499569)
chr6 (143-215)||(9208264-9208336)
chr6 (163-215)||(10007212-10007264)
[»] chr2 (16 HSPs)
chr2 (149-258)||(5394035-5394143)
chr2 (184-233)||(5608129-5608178)
chr2 (139-215)||(40591191-40591267)
chr2 (142-213)||(8192466-8192537)
chr2 (142-234)||(32845102-32845194)
chr2 (144-228)||(41314005-41314089)
chr2 (165-226)||(1435105-1435166)
chr2 (149-215)||(4590907-4590973)
chr2 (191-237)||(35797522-35797567)
chr2 (184-233)||(25293219-25293268)
chr2 (150-215)||(28194246-28194311)
chr2 (142-235)||(30466923-30467016)
chr2 (149-201)||(31681074-31681127)
chr2 (178-215)||(35203367-35203404)
chr2 (142-234)||(14946790-14946882)
chr2 (184-228)||(36242412-36242456)
[»] chr1 (26 HSPs)
chr1 (122-239)||(18646844-18646961)
chr1 (184-256)||(168254-168325)
chr1 (139-215)||(1138587-1138663)
chr1 (159-235)||(1378926-1379002)
chr1 (184-235)||(8254845-8254896)
chr1 (149-216)||(17447292-17447359)
chr1 (121-235)||(8077637-8077751)
chr1 (149-225)||(6127961-6128037)
chr1 (160-215)||(1378774-1378829)
chr1 (184-235)||(9500448-9500499)
chr1 (184-235)||(15059495-15059546)
chr1 (184-215)||(17745240-17745271)
chr1 (153-252)||(25237066-25237164)
chr1 (148-235)||(45859136-45859223)
chr1 (142-237)||(46113493-46113588)
chr1 (142-256)||(10059066-10059179)
chr1 (142-256)||(46607821-46607934)
chr1 (139-215)||(1486428-1486502)
chr1 (155-215)||(2799893-2799954)
chr1 (142-235)||(4621330-4621423)
chr1 (178-215)||(6650650-6650687)
chr1 (142-235)||(24674404-24674497)
chr1 (142-215)||(32729556-32729629)
chr1 (149-185)||(6471690-6471726)
chr1 (140-228)||(7946853-7946941)
chr1 (139-215)||(24216986-24217062)
[»] scaffold0576 (1 HSPs)
scaffold0576 (142-235)||(5175-5268)
[»] scaffold0074 (1 HSPs)
scaffold0074 (184-215)||(45743-45774)
[»] scaffold0140 (1 HSPs)
scaffold0140 (163-205)||(29506-29548)
[»] scaffold0049 (1 HSPs)
scaffold0049 (143-228)||(66774-66859)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 5472289 - 5472486
Alignment:
Q  12 tatactgtgatctcattaatttgagagacaaaatatcataaccaataatgcactactagaatatataattgtaagnnnnnnnn-tgctttttatttgata 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  5472289 tatactgtgatctcattaatttgagagacaaaatatcataaccaataatgcactactagaatatataattgtaagaaaaaaaaatgctttttatttgata 5472388  T
Q  111 atgttgtcttttttaaccaattcgaggctgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtg 208  Q
    |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| ||  ||||| | ||||||||||||||||||||    
T  5472389 atgttgtcttttttaaccaatttggggctgacctattagttggtttgagatcttggagtgtacttttcctaaagtttaatgttcgattctctctggtg 5472486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 326
Target Start/End: Original strand, 5472495 - 5472552
Alignment:
Q  269 cccatccaattaatcgatttttggatcaaatactgaattttaaaaaatatatgatgtc 326  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  5472495 cccatcaaattaatcgatttttggatcagatactgaatttaaaaaaatatatgatgtc 5472552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 37495056 - 37495151
Alignment:
Q  140 gacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||||| ||||| ||||||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||||||| |||||||| ||||||    
T  37495056 gacctagtggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaattttggtgggctaagtccataca 37495151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 13038640 - 13038547
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||||||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||||| | |||||||||||||||    
T  13038640 cctagtggttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaattttgatgggctaagttcataca 13038547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 43442222 - 43442288
Alignment:
Q  150 ttggtttgagatcttggagtgtacttctc-tcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||||||||||||| ||||||| || ||| |||| |||||| ||||||||||||||| |||||||||    
T  43442222 ttggtttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctgttgtcaattt 43442288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 11465085 - 11465000
Alignment:
Q  150 ttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||| |||| |||||||||| | || |||  || |||||| ||||||||  |||||||| |||||||||| |||||||||||||||    
T  11465085 ttggcttgaaatcttggagtttgctcctccaaatgtctcaggttcgatttcctctggtgccaattttggtgggctaagttcataca 11465000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 8780506 - 8780562
Alignment:
Q  159 gatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||||||| || ||||||| |||||| |||||||| ||||| ||||||||||    
T  8780506 gatcttggagtgtgctcctctcaaggtctcaggttcgattgtctcttgtgtcaattt 8780562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 31288132 - 31288036
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaag 238  Q
    |||||| ||||| ||| ||||||||||| | || |||  || |||||||||||||||| || ||||| |||||| ||| || ||||| |||||||||    
T  31288132 cctagtggttggcttgggatcttggagtttgctcctccaaaggtctcatgttcgattccctttggtgccaatttcggtgggttaagtccatacaaag 31288036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 30485881 - 30485932
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  30485881 gtctcaggttcgattcactctggtgtcaatttcggtgggctaagtccataca 30485932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 38990641 - 38990598
Alignment:
Q  174 ttctctcaaagtctcatgttcgattctctctggtgtcaattttg 217  Q
    |||||||||  ||||||||||||||||||| |||||||||||||    
T  38990641 ttctctcaagatctcatgttcgattctctccggtgtcaattttg 38990598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 12398627 - 12398541
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    ||||| ||| ||||||||||| | || |||  || |||||| ||||||||| || |||||||||||| ||| | |||||||||||||    
T  12398627 gttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctatggtgtcaatttcggtggcctaagttcataca 12398541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 13108592 - 13108542
Alignment:
Q  185 tctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    ||||| ||||||||| |||||||| |||||||| | |||||||||||||||    
T  13108592 tctcaggttcgattccctctggtgccaattttgatgggctaagttcataca 13108542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 473
Target Start/End: Original strand, 5472708 - 5472737
Alignment:
Q  444 ttctaacaagcctagggaaagtgatcttag 473  Q
    ||||||||||||||||||||||||||||||    
T  5472708 ttctaacaagcctagggaaagtgatcttag 5472737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 8484847 - 8484754
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| ||| ||||| |||||||| |||||| ||| |||||||||||||||    
T  8484847 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctctggtgccaatttcggtgggctaagttcataca 8484754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 11926688 - 11926595
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||||||| ||||||||||| | || |||   | |||||| ||| ||||| |||||||| |||||| ||| |||||||| ||||||    
T  11926688 cctagtggttggtttgggatcttggagtttgctcctccagaggtctcaggttagattccctctggtgccaatttcggtgggctaagtccataca 11926595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 25627112 - 25627149
Alignment:
Q  178 ctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  25627112 ctcaaggtctcaggttcgattctctctggtgtcaattt 25627149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 32059626 - 32059533
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||  || |||||| |||||||||  ||||||| |||||| ||| |||||||| ||||||    
T  32059626 cctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccttctggtgccaatttcggtgggctaagtccataca 32059533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 33709687 - 33709594
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  33709687 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaagttcgattccctctggtgccaatttcggtgggctaagtccataca 33709594  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 16173034 - 16172982
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctc 201  Q
    ||||| |||||| |||||||||| || ||||||| |||||| |||||||||||    
T  16173034 gttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattctc 16172982  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 24255461 - 24255521
Alignment:
Q  144 tagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctct 204  Q
    |||| ||||| ||||||| |||||||||| | |||||||| || ||| |||||||||||||    
T  24255461 tagtggttggcttgagatgttggagtgtattcctctcaaaatcacatattcgattctctct 24255521  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 36895453 - 36895501
Alignment:
Q  159 gatcttggagtgtacttctctcaaagtctcatgttcgattctctctggt 207  Q
    ||||||||||||| || ||||||| || ||||||||||||| |||||||    
T  36895453 gatcttggagtgtgctcctctcaaggtttcatgttcgattccctctggt 36895501  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 13525569 - 13525660
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatac 234  Q
    |||||||||||||||||||| || || |||||||||||||| |||||||||||||||| |||||||| |||| ||| | |||||||| |||||    
T  13525569 cctagtagttggtttgagattttagaatgtacttctctcaaggtctcatgttcgattc-ctctggtgccaatcttgatgggctaagtccatac 13525660  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 13615104 - 13615195
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatac 234  Q
    |||||||||||||||||||| || || |||||||||||||| |||||||||||||||| |||||||| |||| ||| | |||||||| |||||    
T  13615104 cctagtagttggtttgagattttagaatgtacttctctcaaggtctcatgttcgattc-ctctggtgccaatcttgatgggctaagtccatac 13615195  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 22200739 - 22200673
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |||| ||| ||||||    
T  22200739 gttggtttgggatcttggagtttacttctctcaaagtctcaggttcgattccctctagtgccaattt 22200673  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 30482560 - 30482630
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggt 219  Q
    |||||||||||||||| || ||| |||||||||| |||||| || |||||||||||| |||||| ||||||    
T  30482560 gttggtttgagatcttcgaatgtgcttctctcaatgtctcaggtccgattctctctgatgtcaaatttggt 30482630  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 41070776 - 41070868
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||  ||| ||||||||||||| || ||||||| |||||| ||||||||| || |||||||||||| ||| ||| |||||||||||    
T  41070776 cctagtggttgacttgggatcttggagtgtgctactctcaaggtctcaagttcgattccctttggtgtcaatttcggtgggc-aagttcataca 41070868  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 28964049 - 28964140
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatac 234  Q
    ||||| |||||||||||||||| |||| | || |||| || || |||||||||||||  ||||||| |||||| ||| |||||||| |||||    
T  28964049 ctagtggttggtttgagatcttagagtttgctcctcttaaggtttcatgttcgattccatctggtgccaatttcggtgggctaagtccatac 28964140  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 3734809 - 3734716
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||  || |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  3734809 cctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 3734716  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 27746521 - 27746428
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||||||| ||||||||||| | || |||  || |||||| ||||||||| || ||||| |||||| ||| |||||||| ||||||    
T  27746521 cctagtggttggtttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccataca 27746428  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 33585813 - 33585732
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggc 223  Q
    |||||| |||||||||||||||| |||||| || |||||||||| ||| ||||||||  ||||  ||| ||||| |||||||    
T  33585813 cctagtggttggtttgagatcttagagtgtgctcctctcaaagtttcaggttcgatttcctcttatgttaatttcggtaggc 33585732  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 5202271 - 5202203
Alignment:
Q  147 tagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||||||||| |||||||| ||| | ||  ||||||||||||| |||||||| |||||| |||||||||    
T  5202271 tagttggtttaagatcttgaagtttgctcatctcaaagtctcaagttcgattttctctgatgtcaattt 5202203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 32206325 - 32206249
Alignment:
Q  139 tgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||  ||||||||||||| ||||| |||  | |||||||  ||||||||||||||| ||||| |||||||||    
T  32206325 tgacctagcggttggtttgagattttggaatgtcttcctctcaagatctcatgttcgattccctctgatgtcaattt 32206249  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 35690085 - 35690037
Alignment:
Q  178 ctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaa 226  Q
    ||||| |||||| |||||||||||||||||||||||||  |||||||||    
T  35690085 ctcaaggtctcaggttcgattctctctggtgtcaatttaagtaggctaa 35690037  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 18540339 - 18540390
Alignment:
Q  165 ggagtgtacttctc-tcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||||||||||||| |||| |||||| |||||||||||||||||| ||||||    
T  18540339 ggagtgtacttctcctcaaggtctcaggttcgattctctctggtgccaattt 18540390  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 25248407 - 25248450
Alignment:
Q  185 tctcatgttcgattctctctggtgtcaattttggtaggctaagt 228  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||||    
T  25248407 tctcaggttcgattccctctggtgtcaatttcggtaggctaagt 25248450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 32879336 - 32879387
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||||||| |||||||| |||||| ||| |||||||||||||||    
T  32879336 gtctcaggttcgattccctctggtgccaatttcggtgggctaagttcataca 32879387  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 13580088 - 13580014
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttg 217  Q
    ||||||||| | ||| ||||||||| |||| |  | ||||  |||||||||||||||||||||||| ||||||||    
T  13580088 ctagtagttaggttgggatcttggactgtaatcttttcaatatctcatgttcgattctctctggtgccaattttg 13580014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 16317636 - 16317702
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||| ||| || ||| |||||| || ||||||  ||||||||||||||||||||||||| ||||||    
T  16317636 gttggcttgggaccttagagtgtgctcctctcagcgtctcatgttcgattctctctggtgccaattt 16317702  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 3174826 - 3174789
Alignment:
Q  178 ctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  3174826 ctcaaggtctcaggttcgattctctctggtgtcaattt 3174789  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 11715005 - 11714948
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattc 199  Q
    |||||| ||||||||||||||||||||| | ||||||||||  | ||| |||||||||    
T  11715005 cctagtggttggtttgagatcttggagtttgcttctctcaagatttcaggttcgattc 11714948  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 12312863 - 12312936
Alignment:
Q  144 tagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttg 217  Q
    ||||||||| |||| ||||||||||| | ||  ||||||| ||||| ||||||||  |||||||| ||||||||    
T  12312863 tagtagttgatttgggatcttggagtttgctcttctcaaaatctcaagttcgatttcctctggtgccaattttg 12312936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 34237841 - 34237748
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  34237841 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 34237748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 2166720 - 2166805
Alignment:
Q  148 agttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||||||| ||||||||||| | ||||||  || |||||| ||||||||| |||  ||| ||||||  ||||||||||| ||||||    
T  2166720 agttggtttgggatcttggagtttgcttctccaaaggtctcaggttcgattccctc--gtgccaatttcagtaggctaagtccataca 2166805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 4698867 - 4698823
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagt 228  Q
    |||||| ||||||||| ||||||||||||||| ||| ||||||||    
T  4698867 gtctcaggttcgattccctctggtgtcaatttcggtgggctaagt 4698823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 11956241 - 11956169
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||| |||| ||||||||||| ||||||  |||||||||  ||| | | |||||| ||||||||||||||||    
T  11956241 ctagtggttgatttgagatcttagagtgtgattctctcaatatcttaagctcgattttctctggtgtcaattt 11956169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 23361670 - 23361622
Alignment:
Q  178 ctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaa 226  Q
    ||||| |||||| |||| |||||||||||||||||||| ||| ||||||    
T  23361670 ctcaaggtctcaggttcaattctctctggtgtcaatttaggtgggctaa 23361622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 36205221 - 36205273
Alignment:
Q  150 ttggtttgagatcttggagtgtacttctc-tcaaagtctcatgttcgattctc 201  Q
    |||||||||||||| ||||||| || ||| |||| ||||||||||||||||||    
T  36205221 ttggtttgagatctgggagtgtgctcctcctcaaggtctcatgttcgattctc 36205273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 51532797 - 51532893
Alignment:
Q  139 tgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    ||||||| ||||||||||||||| ||||||| | ||||||  || |||||||||||||||||||||  || |||||| ||| |||||||| ||||||    
T  51532797 tgacctattagttggtttgagattttggagtttgcttctccaaaggtctcatgttcgattctctctaatgccaatttcggtgggctaagtccataca 51532893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 16140319 - 16140385
Alignment:
Q  153 gtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggt 219  Q
    ||||| ||||||||||  | || ||||||||||||||||||||||| ||||| ||||||||||||||    
T  16140319 gtttgggatcttggagcttgctcctctcaaagtctcatgttcgattttctctagtgtcaattttggt 16140385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 4252582 - 4252509
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||||| ||||| ||||||||||||||||| || ||||||| |||||| ||| ||||| |||||||| ||||||    
T  4252582 cctagtggttggcttgagatcttggagtgtgctcctctcaaggtctcaagtttgattccctctggtgccaattt 4252509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 55371491 - 55371398
Alignment:
Q  122 tttaaccaattcgaggctgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||| ||| |||| || |||||| ||||| ||| ||| ||||||| | |||||||||| |||||||||||||||| || ||||| ||||||    
T  55371491 tttaacctatttgaggttggcctagtggttggcttgcgattttggagtatgcttctctcaaggtctcatgttcgattccctttggtgccaattt 55371398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 53234095 - 53234003
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    ||||| ||||| ||| ||||||||||| | || |||   |||||||| |||||||||||||||||| |||||| ||| |||||||| ||||||    
T  53234095 ctagtggttggcttgggatcttggagtttgctcctccagaagtctcaggttcgattctctctggtgccaatttcggtgggctaagtccataca 53234003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 21362996 - 21363047
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||| ||||||    
T  21362996 gtctcaggttcgattccctctggtgtcaatttcggtaggctaagtccataca 21363047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 27887440 - 27887531
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatac 234  Q
    ||||| ||||| ||||||| ||||||||| |||||||||| |||| | |||||||||   ||  ||||||||||||| |||||||| |||||    
T  27887440 ctagtggttggcttgagatattggagtgtgcttctctcaatgtcttaggttcgattcctccttatgtcaattttggtgggctaagtccatac 27887531  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 8958180 - 8958126
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaag 238  Q
    |||| ||||||||||  ||||||||||||||||||| |||||||| |||||||||    
T  8958180 gtcttatgttcgatttcctctggtgtcaattttggtgggctaagtccatacaaag 8958126  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 27812057 - 27811999
Alignment:
Q  139 tgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgat 197  Q
    ||||||||| |||| |||||||| ||||| ||| |||||||||| ||||||||||||||    
T  27812057 tgacctagtggttgatttgagattttggaatgtgcttctctcaaggtctcatgttcgat 27811999  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 4462644 - 4462737
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||||||||||||||| | || ||   ||||||||||||||||||| ||||||   |||||| | | |||||||||||||||    
T  4462644 cctagtggttggcttgagatcttggagtttgctacttcaaaagtctcatgttcgattccctctggcaccaatttcgatgggctaagttcataca 4462737  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 40133635 - 40133542
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||| ||||||| | || |||  || |||||| ||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  40133635 cctagtggttggcttgggattttggagtttgctcctccaaaggtctcaggttcgattccctctggtgtcaatttcggtgggctaagtccataca 40133542  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 2511441 - 2511390
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||||||| |||||||| |||||| ||| |||||||||||||||    
T  2511441 gtctcaggttcgattccctctggtgccaatttcggtgggctaagttcataca 2511390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 10682993 - 10682942
Alignment:
Q  150 ttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctc 201  Q
    |||| |||||| |||||||||| ||||||||||||||||| |||| ||||||    
T  10682993 ttggcttgagaccttggagtgtgcttctctcaaagtctcaggttcaattctc 10682942  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 49029920 - 49030030
Alignment:
Q  147 tagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagtcatgttc 246  Q
    |||||||||||| |||||| ||||||||| ||| ||  | | | |||||||| ||||| ||| |||||||||||||| | ||||||| | ||   |||||    
T  49029920 tagttggtttgaaatcttgaagtgtacttttcttaagattttaggttcgattttctcttgtgccaattttggtaggc-aggttcatatagagctttgttc 49030018  T
Q  247 tgactttaaatg 258  Q
    ||||||||||||    
T  49030019 tgactttaaatg 49030030  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 49167074 - 49167160
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaag-tctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    ||||| ||||||||||||||| | || ||| ||||| | ||| ||||||||||||||||||||||||| ||| | |||||| ||||||    
T  49167074 gttggcttgagatcttggagtttgctcctc-caaagatatcaggttcgattctctctggtgtcaatttcggtggactaagtccataca 49167160  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 4222167 - 4222233
Alignment:
Q  150 ttggtttgagatcttggagtgtacttctc-tcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||| ||| ||||| ||||||| || ||| ||||||||| | |||||||||||||||||||||||||    
T  4222167 ttggcttgggatctgggagtgtgctcctcctcaaagtcttaggttcgattctctctggtgtcaattt 4222233  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 7470401 - 7470308
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||  ||||||||||||||| | || |||  || |||||| ||||||||| ||||  || |||||| ||| |||||||||||||||    
T  7470401 cctagtggttgacttgagatcttggagtttgctcctccaaaggtctcaggttcgattccctctaatgccaatttcggtgggctaagttcataca 7470308  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 15566685 - 15566592
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||||||||||||||| | || |||   | |||||| ||||||||| |||| ||| |||||| ||| |||||||| ||||||    
T  15566685 cctagtggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctctagtgccaatttcggtgggctaagtccataca 15566592  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 26108303 - 26108396
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  26108303 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 26108396  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 30807339 - 30807246
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  30807339 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 30807246  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 35492922 - 35493015
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  35492922 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 35493015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 48991675 - 48991708
Alignment:
Q  159 gatcttggagtgtacttctctcaaagtctcatgt 192  Q
    ||||||||||||| ||||||||||||||||||||    
T  48991675 gatcttggagtgtgcttctctcaaagtctcatgt 48991708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 39041996 - 39041952
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagt 228  Q
    |||||| |||||||||||||||||| |||||| ||| ||||||||    
T  39041996 gtctcaagttcgattctctctggtgccaatttcggtgggctaagt 39041952  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 42814896 - 42814994
Alignment:
Q  159 gatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagtcatgttctgactttaaatg 258  Q
    ||||||||||| | || ||||  |||||||| ||||||||| ||||||||||||||| ||| |||||||| ||||||||| | || ||||||||||||||    
T  42814896 gatcttggagtttgctcctcttgaagtctcaggttcgattccctctggtgtcaatttcggtgggctaagtccatacaaag-cttgctctgactttaaatg 42814994  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 7721395 - 7721461
Alignment:
Q  150 ttggtttgagatcttggagtgtacttctc-tcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||||||| || || |||||||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  7721395 ttggtttgggacctgggagtgtactcctcctcaaggtctcatgttcgattctctctggtgtcaattt 7721461  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 28089831 - 28089928
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagt 239  Q
    |||||| ||||| ||||||||||||||| | || |||   | |||||| ||||||| | ||||||||||||||| ||| |||||||| ||||||||||    
T  28089831 cctagtggttggcttgagatcttggagtttgctcctccagatgtctcaggttcgataccctctggtgtcaatttcggtgggctaagtccatacaaagt 28089928  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 28647001 - 28647057
Alignment:
Q  159 gatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||||||| |||||||||| |||||| ||||||||| |||||||| ||||||    
T  28647001 gatcttggagtgtgcttctctcaaggtctcaggttcgattccctctggtgccaattt 28647057  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 22703543 - 22703597
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaag 238  Q
    |||||| ||||||||| ||||||||||||||| ||| |||||||| |||||||||    
T  22703543 gtctcaggttcgattccctctggtgtcaatttcggtgggctaagtccatacaaag 22703597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 2751286 - 2751379
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||  || |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  2751286 cctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 2751379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 22696335 - 22696408
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||||| |||| |||| ||||||||||||| || ||||||| |||||| ||| ||||| |||||||| ||||||    
T  22696335 cctagtggttgatttgggatcttggagtgtgctcctctcaaggtctcaggtttgattccctctggtgccaattt 22696408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 9183212 - 9183164
Alignment:
Q  178 ctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaa 226  Q
    |||||||||||| |||||||| |||||||||||||||| ||| ||||||    
T  9183212 ctcaaagtctcaggttcgattatctctggtgtcaatttgggtgggctaa 9183164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 11997865 - 11997957
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    ||||| ||||| ||| ||||||||||| | || ||||  | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  11997865 ctagtggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattccctctggtgccaatttcggttggctaagtccataca 11997957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 9718173 - 9718082
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcata 233  Q
    |||||| |||||  |||||| ||||||| | || |||  ||||||||| ||||||||| ||||||||||||||| | | |||||||| ||||    
T  9718173 cctagtggttggcctgagatattggagtttgctcctccaaaagtctcaagttcgattccctctggtgtcaatttcgatgggctaagtccata 9718082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 46572228 - 46572194
Alignment:
Q  181 aaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||| |||||||||||||||||||||||||||||    
T  46572228 aaagtatcatgttcgattctctctggtgtcaattt 46572194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 47541406 - 47541472
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||||||| |||||||||||||| || ||||||| || | | ||| |||||||| ||||||||||||    
T  47541406 gttggtttcagatcttggagtgtgctcctctcaaggttttaagtttgattctctttggtgtcaattt 47541472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 48199183 - 48199260
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtag 221  Q
    ||||| ||||||||||||| ||||||||||| |||||||  |||||  ||||||||  |||| |||||||||| |||||    
T  48199183 ctagtggttggtttgagattttggagtgtac-tctctcagtgtctcgggttcgatttcctctagtgtcaatttcggtag 48199260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 3950974 - 3950897
Alignment:
Q  143 ctagtagttggtttgaga-tcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggt 219  Q
    ||||| ||||| |||||| |||||||| || || ||||||| |||||||||||||||| || |||||  |||||||||    
T  3950974 ctagtggttggcttgagaatcttggagcgtgctcctctcaatgtctcatgttcgattccctttggtgctaattttggt 3950897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 7176048 - 7175955
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  7176048 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 7175955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 7275292 - 7275385
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  7275292 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 7275385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 17197136 - 17197043
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||||||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||| |||  ||||||| ||||||    
T  17197136 cctagtggttggtttgcgatcttggagtttgctcctccataggtctcaagttcgattccctctggtgccaatttcggtgagctaagtccataca 17197043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 22119903 - 22119996
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  22119903 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 22119996  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 33222425 - 33222462
Alignment:
Q  178 ctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  33222425 ctcaaggtctcaggttcgattctctctggtgtcaattt 33222462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 37162395 - 37162334
Alignment:
Q  155 ttgagatcttggagtgtacttct-ctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||| | ||||||| ||||| ||||| |||||| |||||||||||||||||| ||||||    
T  37162395 ttgagatttgggagtgtgcttcttctcaaggtctcaagttcgattctctctggtgccaattt 37162334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 40543096 - 40543003
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  40543096 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 40543003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 47824621 - 47824584
Alignment:
Q  178 ctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  47824621 ctcaaagtctcatgttcgattgtctccggtgtcaattt 47824584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 15137608 - 15137656
Alignment:
Q  178 ctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaa 226  Q
    ||||| |||||| ||| ||||||||||||||||||||| ||| ||||||    
T  15137608 ctcaaggtctcaggttagattctctctggtgtcaatttgggtgggctaa 15137656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 22643486 - 22643415
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagtcatgttctgactttaaa 256  Q
    |||| ||||||||||  ||||| ||||||||| |||||||||||| |||||| || | || ||||||||||||    
T  22643486 gtcttatgttcgatttcctctgatgtcaatttcggtaggctaagtccatacagag-cttgctctgactttaaa 22643415  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 40332115 - 40332187
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||| ||||| |||| |||||||||| | || |||| || |||||| ||||||||  |||||||||||||||    
T  40332115 ctagtggttggcttgaaatcttggagtttgctcctctaaaggtctcaggttcgatttcctctggtgtcaattt 40332187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 42712013 - 42712061
Alignment:
Q  178 ctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaa 226  Q
    ||||| |||||||||||||||||| || |||||||||| ||| ||||||    
T  42712013 ctcaaggtctcatgttcgattctccctagtgtcaatttaggtgggctaa 42712061  T

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Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 166047 - 166134
Alignment:
Q  148 agttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||||||| ||| ||||||||| ||||| | ||||||| | |||||||| ||| | |||||||||||| | |||||||||||||||    
T  166047 agttggtttgtgatattggagtgtgcttcttttaaagtcttaggttcgattatcttttgtgtcaattttgatgggctaagttcataca 166134  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 34835541 - 34835632
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatac 234  Q
    ||||| ||||| ||| |||||| |||| | || |||| || |||||||||||||||| ||||||||||||||| ||| |||||||| |||||    
T  34835541 ctagtggttggcttgggatcttagagtttgctcctcttaaggtctcatgttcgattccctctggtgtcaatttcggtgggctaagtccatac 34835632  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 40059038 - 40058945
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || ||||  | |||||| |||||||||||||||||| |||||| ||| |||||||| ||||||    
T  40059038 cctagtggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccataca 40058945  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 33992634 - 33992730
Alignment:
Q  139 tgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    ||||||||| ||||||||| ||||||||||| | || |||   | |||| | |||||||||||||||||| |||||| ||| |||||||| ||||||    
T  33992634 tgacctagtggttggtttgggatcttggagtttgctcctccagaggtcttaggttcgattctctctggtgccaatttcggtgggctaagtccataca 33992730  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 49287876 - 49287964
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaa 237  Q
    ||||||||| ||||||||||| | || |||   | |||||| |||||||||||||||||| |||||| ||| |||||||| ||||||||    
T  49287876 gttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacaaa 49287964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 13873439 - 13873388
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||||||| |||||||| |||||| |||||||||||||||||||    
T  13873439 gtctcaggttcgattccctctggtgccaatttcggtaggctaagttcataca 13873388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 25414265 - 25414195
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggt 219  Q
    ||||| |||||| |||||||||| || |||||||||||||| ||| ||||||| | |||| ||||||||||    
T  25414265 gttggcttgagaccttggagtgtgctcctctcaaagtctcaggtttgattctccccggtgccaattttggt 25414195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 41621775 - 41621705
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggt 219  Q
    ||||| ||||||||||||||| | || ||||||| |||||||||| ||||  |||||||| ||||||||||    
T  41621775 gttggcttgagatcttggagtttgctcctctcaaggtctcatgtttgatttcctctggtgccaattttggt 41621705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 25852225 - 25852318
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||  || |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  25852225 cctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 25852318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 34844944 - 34844851
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||| | ||||||||||||||| | || |||   | |||||| |||||||||||||||||| |||||| ||| |||||||| ||||||    
T  34844944 cctagtggtttgcttgagatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccataca 34844851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 7949475 - 7949427
Alignment:
Q  178 ctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaa 226  Q
    ||||| |||||| ||||||||||||||||||||||||| ||| ||||||    
T  7949475 ctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaa 7949427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 9646401 - 9646329
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||| ||||||||| |||||| |||||| || || |||| |||||||||| ||||||||||| || ||||||    
T  9646401 ctagtggttggtttgggatctttgagtgtgctcctgtcaaggtctcatgtttgattctctctgatgacaattt 9646329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 5609346 - 5609295
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| |||||||||||||||||| |||||| ||| |||||||| ||||||    
T  5609346 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccataca 5609295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 13584440 - 13584349
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcata 233  Q
    |||||| |||||  |||||| ||||||| | || |||  ||||||||| ||||||||| ||||||||||||||| | | |||||||| ||||    
T  13584440 cctagtggttggcctgagatattggagtttgctcctccaaaagtctcaagttcgattccctctggtgtcaatttcgatgggctaagtccata 13584349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 22625273 - 22625163
Alignment:
Q  125 aaccaattcgaggctgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggct 224  Q
    |||| ||| |||| || |||||| ||||| ||| ||||||||||| |||| |||   | |||||| ||||||||| |||||| | |||||| ||| ||||    
T  22625273 aacccatttgaggttggcctagtggttggcttgggatcttggagtttactcctccagaggtctcaggttcgattccctctggagccaatttcggtgggct 22625174  T
Q  225 aagttcataca 235  Q
    |||| ||||||    
T  22625173 aagtccataca 22625163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 39343522 - 39343560
Alignment:
Q  179 tcaaagtctcatgttcgattctctctggtgtcaattttg 217  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  39343522 tcaaagtttcaggttcgattctctctggtgtcaattttg 39343560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 40252310 - 40252368
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctc 201  Q
    ||||||||||  |||  |||||||||||| |||||||||| |||||| |||||||||||    
T  40252310 ctagtagttgacttggaatcttggagtgtgcttctctcaaggtctcaagttcgattctc 40252368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 41085050 - 41085100
Alignment:
Q  155 ttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctg 205  Q
    ||||||||||||||||| || || |||| |||| |||||||||||||||||    
T  41085050 ttgagatcttggagtgtcctcctttcaaggtctaatgttcgattctctctg 41085100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 12710190 - 12710247
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattc 199  Q
    |||||| ||||||||| ||||||||||| | ||||||| || |||||| |||||||||    
T  12710190 cctagtggttggtttgggatcttggagtatgcttctcttaaggtctcaggttcgattc 12710247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 13015486 - 13015519
Alignment:
Q  182 aagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||||||||||||||||||||| |||||||||||    
T  13015486 aagtctcatgttcgattctctcaggtgtcaattt 13015519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 37317453 - 37317404
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgatt 198  Q
    ||||||||||||| ||| ||| |||| |||||||| ||||||||||||||    
T  37317453 gttggtttgagattttgaagtatactcctctcaaaatctcatgttcgatt 37317404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 43352503 - 43352434
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttgg 218  Q
    ||||| |||||||| |||||| | || |||||||   |||| ||||||||||||||||||||||| ||||    
T  43352503 gttggcttgagatcatggagtttgctcctctcaagaactcaggttcgattctctctggtgtcaatcttgg 43352434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 52983630 - 52983723
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||||||||||||||| | || |||   | |||||| ||||||||| |||||||| ||||||  || |||||||| ||||||    
T  52983630 cctagtggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcagtgggctaagtccataca 52983723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 9517785 - 9517714
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagtcatgttctgactttaaa 256  Q
    |||||| |||||||||||||||||| ||||||  || |||||||| |||||| || | || ||||||||||||    
T  9517785 gtctcaggttcgattctctctggtgccaatttcagtgggctaagtccatacagag-cttgctctgactttaaa 9517714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 21344842 - 21344918
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggcta 225  Q
    ||||| ||| || |||||||||| || ||||||| ||||||||||| |||||| |  |||||||||| ||| |||||    
T  21344842 gttggcttgggaccttggagtgtgctcctctcaaggtctcatgttcaattctccccagtgtcaatttaggtgggcta 21344918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 23334033 - 23333997
Alignment:
Q  179 tcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  23334033 tcaaagtctcgtgttcgattatctctggtgtcaattt 23333997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 29195120 - 29195196
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggcta 225  Q
    ||||| ||| || |||||||||| || ||||||| ||| || ||||||||||||||  || |||||||||| |||||    
T  29195120 gttggcttgggaccttggagtgtgctcctctcaaggtcgcaagttcgattctctctaatgccaattttggttggcta 29195196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 258
Target Start/End: Original strand, 32986208 - 32986323
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagtca 241  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| |||| |||| |||||||| |||||| ||| |||||||| |||||| || |     
T  32986208 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattccctctggtgccaatttcggtgggctaagtccatacagag-ct 32986306  T
Q  242 tgttctgactttaaatg 258  Q
    || ||||||||||||||    
T  32986307 tgctctgactttaaatg 32986323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 37172816 - 37172860
Alignment:
Q  177 tctcaaagtctcatgttcgattctctctggtgtcaattttggtag 221  Q
    |||||||||||||  |||||||  |||||||||||||||||||||    
T  37172816 tctcaaagtctcaaattcgatttactctggtgtcaattttggtag 37172860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 43719250 - 43719158
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    ||||| ||||||||||||||||||||| | || |||   | || ||| |||||||||||||| |||  ||||| ||| |||||||| ||||||    
T  43719250 ctagtggttggtttgagatcttggagtttgctcctccagaggtttcaggttcgattctctctagtgctaatttcggtgggctaagtccataca 43719158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 28672078 - 28672171
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||  ||||||||||||||| | || ||||  | |||| | ||||||||| ||||||||||||||||||| |||||||| ||||||    
T  28672078 cctagtggttgacttgagatcttggagtttgctcctctagaggtcttaggttcgattccctctggtgtcaattttggtgggctaagtccataca 28672171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 17149635 - 17149576
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtg 208  Q
    ||||||||| ||||||||||||| || ||||||| |||||| ||||||||| ||||||||    
T  17149635 gttggtttgggatcttggagtgtgctcctctcaaggtctcaggttcgattccctctggtg 17149576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 3869721 - 3869791
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggt 219  Q
    ||||| |||||||||| |||||| ||||| |||| |||||||||||||||||| | |||| |||| |||||    
T  3869721 gttggcttgagatcttcgagtgtgcttctatcaaggtctcatgttcgattctccccggtgccaatattggt 3869791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 3907553 - 3907627
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttg 217  Q
    ||||| ||||||||| |||||||| |||| || |||||||  | ||| |||||||||||||||||| ||||||||    
T  3907553 ctagtggttggtttgggatcttggggtgtgctcctctcaagatttcaagttcgattctctctggtgccaattttg 3907627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 11448882 - 11448975
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| |||||||||||||||||| |||||| ||| |||||||| ||||||    
T  11448882 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccataca 11448975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 15360284 - 15360191
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||  || |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  15360284 cctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 15360191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 24256844 - 24256799
Alignment:
Q  177 tctcaaagtctcatgttcgattctctctggtgtcaattttggtagg 222  Q
    |||||| |||||| ||||||||||||||||||||||||| ||||||    
T  24256844 tctcaaggtctcaagttcgattctctctggtgtcaatttaggtagg 24256799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 33718643 - 33718567
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaag-tctcatgttcgattctctctggtgtcaattttggt 219  Q
    ||||| ||||||||| ||||||||||| |||||||| || || ||||| ||||||||||||||||||  |||||||||    
T  33718643 ctagtggttggtttgggatcttggagtttacttctc-cagagatctcaggttcgattctctctggtgcaaattttggt 33718567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 6691588 - 6691528
Alignment:
Q  162 cttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtagg 222  Q
    |||||||||| || ||||||| |||||| ||||||||||||| |||| |||||| ||||||    
T  6691588 cttggagtgtgctcctctcaaggtctcaggttcgattctctccggtgccaatttcggtagg 6691528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 28742010 - 28741950
Alignment:
Q  159 gatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggt 219  Q
    ||||||||||||| || ||||||| |||||| |||||||||  |||||||| |||||||||    
T  28742010 gatcttggagtgtgctcctctcaaggtctcaggttcgattcgttctggtgttaattttggt 28741950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 11007177 - 11007272
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaag 238  Q
    ||||| ||||| ||| ||||||||||| | || |||  || |||||| ||||||||| ||||| | ||||||| ||| |||||||| |||||||||    
T  11007177 ctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattcactctgctctcaatttcggtgggctaagtccatacaaag 11007272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 17081198 - 17081125
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagtcatgttctgactttaaatg 258  Q
    |||||| ||| ||||| ||||||||||||||| ||| |||||||| |||||| || | || ||||||||||||||    
T  17081198 gtctcaagtttgattccctctggtgtcaatttcggtgggctaagtccatacagag-cttgctctgactttaaatg 17081125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 9626093 - 9626134
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggcta 225  Q
    |||||||||||||||||||| |||||||| || |||||||||    
T  9626093 gtctcatgttcgattctctccggtgtcaacttaggtaggcta 9626134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 9843950 - 9844062
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagtcat 242  Q
    ||||| ||||| ||| ||||||||||| | || ||||  | |||||| |||||| |  ||||||||||||||||||| || ||||| |||||| || | |    
T  9843950 ctagtggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgacttcctctggtgtcaattttggtgggttaagtccatacagag-ctt 9844048  T
Q  243 gttctgactttaaa 256  Q
    |||||| |||||||    
T  9844049 gttctggctttaaa 9844062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 21004865 - 21004832
Alignment:
Q  191 gttcgattctctctggtgtcaattttggtaggct 224  Q
    ||||||||||||| ||||||||||||||||||||    
T  21004865 gttcgattctctccggtgtcaattttggtaggct 21004832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 33499492 - 33499569
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttc-gattctctctggtgtcaattttggtaggcta 225  Q
    ||||| ||| ||||||||||| | || ||||||| |||||| |||| ||||| ||||||||||||||| ||| |||||    
T  33499492 gttggcttgggatcttggagtttgctcctctcaaggtctcaggttcagattccctctggtgtcaatttcggtgggcta 33499569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 9208264 - 9208336
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||| ||||| ||| ||||||||||| | || ||||||| |||||| ||||||||| | |||||| ||||||    
T  9208264 ctagtggttggattgggatcttggagtttgctcctctcaaggtctcaggttcgattccccctggtgccaattt 9208336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 10007212 - 10007264
Alignment:
Q  163 ttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||| || ||||||| |||||| ||| |||| ||||||||||||||||    
T  10007212 ttggagtgtcctcctctcaaggtctcaagtttgattatctctggtgtcaattt 10007264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 5394035 - 5394143
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagtcatgttctg 248  Q
    ||||| ||||||||||||||| | || |||  || |||||| ||||||||| ||||||||||||||| | | |||||||| |||||| |||  || ||||    
T  5394035 gttggcttgagatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgtcaatttcgatgggctaagtccatacagagt-ttgctctg 5394133  T
Q  249 actttaaatg 258  Q
    ||||||||||    
T  5394134 actttaaatg 5394143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 5608178 - 5608129
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcata 233  Q
    ||||||| |||||||||||||||||||||||||||| |||||||| ||||    
T  5608178 gtctcatattcgattctctctggtgtcaattttggtgggctaagtccata 5608129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 40591191 - 40591267
Alignment:
Q  139 tgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||| ||||||| ||||||||||||||||| || |||||||||||||| ||| ||||   ||||||| ||||||    
T  40591191 tgacctaatagttggcttgagatcttggagtgtgctcctctcaaagtctcaggtttgatttcttctggtggcaattt 40591267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 8192537 - 8192466
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaat 213  Q
    |||||| ||||| ||| ||||||||||||| || ||||||| |||||| ||||||||| |||||||| ||||    
T  8192537 cctagtggttggcttgggatcttggagtgtgctcctctcaaggtctcaggttcgattccctctggtgccaat 8192466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 32845102 - 32845194
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatac 234  Q
    |||||||||| | ||| ||||||||||| | || |||  ||||| ||| ||||||||| |||||||| |||||| ||| |||||||| |||||    
T  32845102 cctagtagttagcttgggatcttggagtttgctcctccaaaagtttcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 32845194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 41314005 - 41314089
Alignment:
Q  144 tagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagt 228  Q
    |||| ||||||||| ||||||||||| | || |||   | |||||| ||||||||| ||||||||||||||| ||| ||||||||    
T  41314005 tagtggttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgtcaatttcggtgggctaagt 41314089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 1435105 - 1435166
Alignment:
Q  165 ggagtgtacttctc-tcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaa 226  Q
    ||||||| |||||| |||| |||||| ||||||||||||||||||||||||| ||| ||||||    
T  1435105 ggagtgtgcttctcctcaaggtctca-gttcgattctctctggtgtcaatttgggtgggctaa 1435166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 4590973 - 4590907
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||| || ||||| |||||||| |||||||||| || ||||| |||||||||||| | ||||||||    
T  4590973 gttggcttcagatcgtggagtgtgcttctctcaatgtatcatgctcgattctctctagagtcaattt 4590907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 35797522 - 35797567
Alignment:
Q  191 gttcgattctctctggtgtcaattttggtaggctaagttcatacaaa 237  Q
    |||||||| |||||||||||||||||||| ||| |||||||||||||    
T  35797522 gttcgattttctctggtgtcaattttggtgggc-aagttcatacaaa 35797567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 25293219 - 25293268
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcata 233  Q
    |||||| ||||||||| |||||||| |||||| ||| |||||||||||||    
T  25293219 gtctcaggttcgattccctctggtgccaatttcggtgggctaagttcata 25293268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 28194311 - 28194246
Alignment:
Q  150 ttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||| ||| ||||||||||||| || |||| || |||| | |||||||||||||||||| ||||||    
T  28194311 ttggcttgggatcttggagtgtgctcctcttaaggtcttaggttcgattctctctggtgccaattt 28194246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 30467016 - 30466923
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||||||| ||| ||||||| |  | ||||  | |||||| ||||||||||||||| || |||||| ||| |||||||| ||||||    
T  30467016 cctagtggttggtttgggatattggagtttgttcctctagaggtctcaggttcgattctctctgctgccaatttcggtgggctaagtccataca 30466923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 31681074 - 31681127
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctc-tcaaagtctcatgttcgattctc 201  Q
    ||||| |||||| |||||||||| |||||| ||||||||||| |||||||||||    
T  31681074 gttggcttgagaccttggagtgtgcttctcctcaaagtctcaggttcgattctc 31681127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 35203404 - 35203367
Alignment:
Q  178 ctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  35203404 ctcaaagtctcatgttcgattatctttggtgtcaattt 35203367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 14946790 - 14946882
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatac 234  Q
    |||||| ||||  ||||||||||| ||| | || ||||||| || | | |||||||| ||||||||||||||||  || |||||||| |||||    
T  14946790 cctagtggttgacttgagatcttgaagtttgctcctctcaaggttttaggttcgattttctctggtgtcaatttcagtgggctaagtccatac 14946882  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 36242456 - 36242412
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagt 228  Q
    |||||| ||||||||| ||||||||||||||| ||| ||||||||    
T  36242456 gtctcaggttcgattccctctggtgtcaatttcggtgggctaagt 36242412  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 18646844 - 18646961
Alignment:
Q  122 tttaaccaattcgaggctgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtag 221  Q
    ||||||| ||| | || ||||||||| ||||| ||| |||||| |||| | ||||||   | |||||| |||||||||||||||||| |||||| ||| |    
T  18646844 tttaacctatttggggttgacctagtggttggcttgtgatctttgagtttgcttctccagaggtctcaggttcgattctctctggtgccaatttcggtgg 18646943  T
Q  222 gctaagttcatacaaagt 239  Q
    |||||||  |||||||||    
T  18646944 gctaagtctatacaaagt 18646961  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 168254 - 168325
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagtcatgttctgactttaaa 256  Q
    |||||| ||||||||| |||||||| |||||| ||| ||||||||||||||| || | |||||||||||||||    
T  168254 gtctcaggttcgattccctctggtgccaatttcggtgggctaagttcatacagag-cttgttctgactttaaa 168325  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 1138587 - 1138663
Alignment:
Q  139 tgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||| ||||| ||||||||||||||||| || ||||||| |||| | |||||| ||||||| ||| ||||||    
T  1138587 tgacctagtggttggcttgagatcttggagtgtgctcctctcaaggtcttaggttcgaatctctctagtgccaattt 1138663  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 1378926 - 1379002
Alignment:
Q  159 gatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    ||||||||||| | || |||  ||||||||||||||||||  ||||||||||||||| ||| |||||||| ||||||    
T  1378926 gatcttggagtttgctcctccaaaagtctcatgttcgatttcctctggtgtcaatttcggtgggctaagtccataca 1379002  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 8254896 - 8254845
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| |||||||| |||||||||||||||| ||| |||||||||||||||    
T  8254896 gtctcaggttcgattatctctggtgtcaatttcggtgggctaagttcataca 8254845  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 17447292 - 17447359
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaatttt 216  Q
    |||| |||||||||||||||||| ||||||| || |||||  ||| |||||||||||||| |||||||    
T  17447292 gttgatttgagatcttggagtgtgcttctctgaaggtctctggtttgattctctctggtgccaatttt 17447359  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 8077637 - 8077751
Alignment:
Q  121 ttttaaccaattcgaggctgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggta 220  Q
    |||||||| ||| | || || |||||| ||||| ||| ||||||||||| | || |||   | |||||| |||||||||||||||||| |||||| |||     
T  8077637 ttttaacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattctctctggtgccaatttcggtg 8077736  T
Q  221 ggctaagttcataca 235  Q
    |||||||| ||||||    
T  8077737 ggctaagtccataca 8077751  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 6128037 - 6127961
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggcta 225  Q
    ||||||||| || ||||||| || || ||||||| |||||| ||||||||||| | |||| |||||||||| |||||    
T  6128037 gttggtttgggaccttggagcgtgctcctctcaaggtctcaagttcgattctccccggtgccaattttggtgggcta 6127961  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 1378774 - 1378829
Alignment:
Q  160 atcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||||||||| |||| |||  || ||||||||||||||| ||||||||||||||||    
T  1378774 atcttggagtttactcctccaaaggtctcatgttcgattttctctggtgtcaattt 1378829  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 9500499 - 9500448
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| |||||||||||||||||| |||||| ||| |||||||| ||||||    
T  9500499 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccataca 9500448  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 15059546 - 15059495
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| |||||||||||||||||| |||||| ||| |||||||| ||||||    
T  15059546 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccataca 15059495  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 215
Target Start/End: Complemental strand, 17745271 - 17745240
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||||||||||||||||||||||||||    
T  17745271 gtctcatgttcgattctctctggtgtcaattt 17745240  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 25237164 - 25237066
Alignment:
Q  153 gtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagtcatgttctgactt 252  Q
    ||||| ||||||||||| | |||||||||| |||||| ||||||||| |||| ||| |||||| ||| ||| |||| |||||| |||  || ||||||||    
T  25237164 gtttgggatcttggagtttgcttctctcaaggtctcaggttcgattccctctagtgccaatttcggtgggc-aagtccatacagagttttgctctgactt 25237066  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 45859223 - 45859136
Alignment:
Q  148 agttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||| ||||||||||| | || ||||  | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  45859223 agttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 45859136  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 46113588 - 46113493
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaa 237  Q
    |||||| ||||||||| ||||||||||| | || |||   | |||||| ||||||||| |||||||  |||||| ||| |||||||| ||||||||    
T  46113588 cctagtggttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtaccaatttcggtgggctaagtccatacaaa 46113493  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 10059066 - 10059179
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagtca 241  Q
    |||||| ||||  ||||||||||||||| | || |||||||||||||| |||  |||||||||  ||||||||| | | ||| ||||||||||| |||      
T  10059066 cctagtggttgacttgagatcttggagtttgctcctctcaaagtctcaggtttaattctctctaatgtcaatttcgatgggc-aagttcatacagagttt 10059164  T
Q  242 tgttctgactttaaa 256  Q
    |||| || |||||||    
T  10059165 tgttttggctttaaa 10059179  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 46607821 - 46607934
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcatacaaagtca 241  Q
    |||||| ||||  ||| ||||||||||| | || |||  || |||||| ||||||||| |||||||| |||||| ||| |||||||| |||||| || |     
T  46607821 cctagtggttgacttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagag-ct 46607919  T
Q  242 tgttctgactttaaa 256  Q
    || ||||||||||||    
T  46607920 tgctctgactttaaa 46607934  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 1486428 - 1486502
Alignment:
Q  139 tgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||| ||||| ||| ||||||||||||  || ||||||| |||||| ||||||||| || ||||| ||||||    
T  1486428 tgacctagtggttggcttgggatcttggagtg--ctactctcaaggtctcaggttcgattccctttggtgccaattt 1486502  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 2799893 - 2799954
Alignment:
Q  155 ttgagatcttggagtgtacttctc-tcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||| ||||||| || ||| |||| |||||| |||||||||||||||||| ||||||    
T  2799893 ttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaattt 2799954  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 4621423 - 4621330
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  4621423 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 4621330  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 6650650 - 6650687
Alignment:
Q  178 ctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  6650650 ctcaatgtctcaggttcgattctctctggtgtcaattt 6650687  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 24674404 - 24674497
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||   | |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  24674404 cctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 24674497  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 32729556 - 32729629
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    |||||| ||||| ||| |||||| |||| | || |||||||||||||| ||||||||| || ||||| ||||||    
T  32729556 cctagtggttggcttgggatcttcgagtttgctcctctcaaagtctcaggttcgattccctatggtgccaattt 32729629  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 6471690 - 6471726
Alignment:
Q  149 gttggtttgagatcttggagtgtacttctctcaaagt 185  Q
    ||||||||||||||||||||| | |||||||||||||    
T  6471690 gttggtttgagatcttggagtatgcttctctcaaagt 6471726  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 7946853 - 7946941
Alignment:
Q  140 gacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagt 228  Q
    |||||||| ||||| ||||||||||| ||| | || |||   | |||||| ||||||||| |||||||| |||||| ||| ||||||||    
T  7946853 gacctagtggttggcttgagatcttgaagtttgctcctccagaggtctcaagttcgattccctctggtgccaatttcggtgggctaagt 7946941  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 24216986 - 24217062
Alignment:
Q  139 tgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||| ||||  ||| ||||||||||||| || ||||||| |||||| ||||||||  || ||||| ||||||    
T  24216986 tgacctagtggttgacttgggatcttggagtgtgctcctctcaaggtctcaggttcgattacctttggtgccaattt 24217062  T

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Target: scaffold0576 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 5268 - 5175
Alignment:
Q  142 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagttcataca 235  Q
    |||||| ||||| ||| ||||||||||| | || |||  || |||||| ||||||||| |||||||| |||||| ||| |||||||| ||||||    
T  5268 cctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccataca 5175  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 215
Target Start/End: Complemental strand, 45774 - 45743
Alignment:
Q  184 gtctcatgttcgattctctctggtgtcaattt 215  Q
    ||||||||||||||||||||||||||||||||    
T  45774 gtctcatgttcgattctctctggtgtcaattt 45743  T

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Target: scaffold0140 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 29548 - 29506
Alignment:
Q  163 ttggagtgtacttctctcaaagtctcatgttcgattctctctg 205  Q
    |||||||||  |||||||||||||||||||| |||||||||||    
T  29548 ttggagtgtgtttctctcaaagtctcatgtttgattctctctg 29506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 66774 - 66859
Alignment:
Q  143 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctggtgtcaattttggtaggctaagt 228  Q
    ||||| ||||| ||| ||||||||||| | || |||  || |||||| |||||||||  ||||||| |||||||||| ||||||||    
T  66774 ctagtggttggcttgggatcttggagtttgctcctccaaaggtctcacgttcgattccttctggtgccaattttggtgggctaagt 66859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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