View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15485_high_12 (Length: 400)
Name: NF15485_high_12
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15485_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 9 - 376
Target Start/End: Original strand, 36434485 - 36434852
Alignment:
| Q |
9 |
agcagagaggccagaagaaagtttgatagcttagtgaaggattcataaatttttcttagacttcttattgttgaaaatgtaatgacttttggttctaatc |
108 |
Q |
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| T |
36434485 |
agcagagatgccagaagaaagtttgatagcttagtgaaggattcataaatttttcttagacttcttattgttgaaaatgtaatgacttttggttctaatc |
36434584 |
T |
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| Q |
109 |
tggttgcatgctgtaatgcaattgctttcaatttgatttgtgtgccttttaattgttatcattttgctttttctcccacaactcaaaaaacaaattgttg |
208 |
Q |
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| T |
36434585 |
tggttgcatgctgtaatgcaattgctttcaatttgatttgtgtgccttttaattgttatcgttttgctttttctcccacaactcaaaaaacaaattgttg |
36434684 |
T |
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| Q |
209 |
aaaattcaaccccaaacgacataactactatgacaccaatcacacaaacaaacagaaccgcaacatagtgaaatgattgttcttccaattttgaacagaa |
308 |
Q |
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| T |
36434685 |
aaaattcaaccccaaacgacataactactatgacaccaatcacgcaaacaaacagaactgtaacatagtgaaatgattgttcttccaattttgaacagaa |
36434784 |
T |
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| Q |
309 |
ccctttcatcccatgacaggttgctcacaatatacaagaaattagaagttggaatgtaagaaaggaga |
376 |
Q |
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| T |
36434785 |
ccctttcatcccatgacaggttgctcacaatatacaagaaattagaagttggaatgtaagaaaggaga |
36434852 |
T |
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Back To:
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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 44989426 - 44989366
Alignment:
| Q |
11 |
cagagaggccagaagaaagtttgatagcttagtgaaggattcataaatttttcttagactt |
71 |
Q |
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|||||| |||| |||||||| | |||||||||||||||||||| ||||| ||||||||||| |
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| T |
44989426 |
cagagatgccaaaagaaagtgtaatagcttagtgaaggattcagaaattcttcttagactt |
44989366 |
T |
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