View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15485_high_13 (Length: 362)

Name: NF15485_high_13
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15485_high_13
NF15485_high_13
[»] chr5 (8 HSPs)
chr5 (117-343)||(9047494-9047720)
chr5 (117-343)||(423992-424219)
chr5 (118-343)||(25633575-25633799)
chr5 (204-343)||(18108414-18108553)
chr5 (275-343)||(17076939-17077007)
chr5 (205-260)||(6316054-6316109)
chr5 (208-281)||(36387029-36387102)
chr5 (117-149)||(18108368-18108400)
[»] chr3 (10 HSPs)
chr3 (117-343)||(26557453-26557679)
chr3 (117-330)||(2125587-2125800)
chr3 (117-254)||(52119021-52119161)
chr3 (118-265)||(25911065-25911213)
chr3 (117-196)||(28210886-28210965)
chr3 (117-194)||(25070827-25070904)
chr3 (117-194)||(26903070-26903147)
chr3 (117-194)||(36617893-36617970)
chr3 (204-265)||(37586370-37586431)
chr3 (204-260)||(24993608-24993664)
[»] chr1 (6 HSPs)
chr1 (117-343)||(22787430-22787656)
chr1 (118-343)||(6154077-6154302)
chr1 (116-239)||(7786475-7786598)
chr1 (116-194)||(1017121-1017199)
chr1 (117-166)||(11943671-11943720)
chr1 (117-148)||(18431245-18431276)
[»] chr6 (6 HSPs)
chr6 (117-343)||(16693416-16693642)
chr6 (117-194)||(18816832-18816909)
chr6 (207-343)||(10773907-10774041)
chr6 (111-148)||(5013728-5013765)
chr6 (118-166)||(595756-595804)
chr6 (215-259)||(14902608-14902652)
[»] chr8 (5 HSPs)
chr8 (119-343)||(28535850-28536073)
chr8 (120-343)||(11462739-11462962)
chr8 (117-194)||(45486311-45486388)
chr8 (210-264)||(31550084-31550138)
chr8 (9-96)||(39376852-39376938)
[»] chr7 (8 HSPs)
chr7 (117-239)||(38663277-38663399)
chr7 (117-194)||(39781114-39781191)
chr7 (117-194)||(43266050-43266127)
chr7 (204-235)||(25294588-25294619)
chr7 (204-258)||(24731541-24731595)
chr7 (117-166)||(42896855-42896904)
chr7 (117-166)||(46357788-46357837)
chr7 (215-259)||(12931590-12931634)
[»] chr4 (2 HSPs)
chr4 (117-184)||(8904393-8904461)
chr4 (118-153)||(45065888-45065923)
[»] chr2 (3 HSPs)
chr2 (204-344)||(41793297-41793437)
chr2 (164-194)||(4075409-4075439)
chr2 (215-259)||(21610136-21610180)
[»] scaffold0726 (1 HSPs)
scaffold0726 (204-260)||(276-332)
[»] scaffold0571 (1 HSPs)
scaffold0571 (118-148)||(124-154)
[»] scaffold0009 (1 HSPs)
scaffold0009 (215-259)||(48495-48539)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 117 - 343
Target Start/End: Original strand, 9047494 - 9047720
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataacannnnnnnacggcaaatatta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||||||||    
T  9047494 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaattaatatataacatttttttacggcaaatatta 9047593  T
Q  217 ttcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgaatataggcggcgcacttaaacaccaaaa 316  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  9047594 ttcatcgtcgagaggatgtaagacgcacccacaactcgcggaaaaaacgacagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaa 9047693  T
Q  317 ccactcggtcatgatgccggaatatac 343  Q
    |||||||||||||||||||||||||||    
T  9047694 ccactcggtcatgatgccggaatatac 9047720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 117 - 343
Target Start/End: Original strand, 423992 - 424219
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatac-aattatactaaaaataatatataacannnnnnnacggcaaatatt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||    
T  423992 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacgaattatactaaaaataatatataacatttttttacggcaaatatt 424091  T
Q  216 attcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgaatataggcggcgcacttaaacaccaaa 315  Q
    ||||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||    
T  424092 attcatcgtcgagagggtgtaagacacgcccacgactcgcggaaaaaacggcagaaaatacaaaagtgaccgcatataggtggcacacttaaacaccaaa 424191  T
Q  316 accactcggtcatgatgccggaatatac 343  Q
    ||||||  |||||||||||| |||||||    
T  424192 accactatgtcatgatgccgaaatatac 424219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 118 - 343
Target Start/End: Original strand, 25633575 - 25633799
Alignment:
Q  118 ggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataacannnnnnnacggcaaatattat 217  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  25633575 ggatctagacattgtatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataacatttttttacggcaaatattat 25633674  T
Q  218 tcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgaatataggcggcgcacttaaacaccaaaac 317  Q
    ||||||| ||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  25633675 tcatcgttgagagggtgtaagacacacc-acaactcgcggaaaaaacggcagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaac 25633773  T
Q  318 cactcggtcatgatgccggaatatac 343  Q
    || ||| ||||||||| |||||||||    
T  25633774 cattcgatcatgatgctggaatatac 25633799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 204 - 343
Target Start/End: Original strand, 18108414 - 18108553
Alignment:
Q  204 acggcaaatattattcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgaatataggcggcgcac 303  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| |||    
T  18108414 acggcaaatattattcatcgtcgagagggtgtaagacacgcccacaactcgcggaaaaaatggtagaaaataaaaaagtgaccgtatataggcggcacac 18108513  T
Q  304 ttaaacaccaaaaccactcggtcatgatgccggaatatac 343  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18108514 ttaaacaccaaaaccactcggtcatgatgccggaatatac 18108553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 17077007 - 17076939
Alignment:
Q  275 acaaaagtgaccgaatataggcggcgcacttaaacaccaaaaccactcggtcatgatgccggaatatac 343  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||    
T  17077007 acaaaagtgaccgtatataggcggcacacataaacaccaaaaccactcgatcatgatgccggaatatac 17076939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 6316054 - 6316109
Alignment:
Q  205 cggcaaatattattcatcgtcgagagggtgtaagatgcacccacaactcgcggaaa 260  Q
    |||||||||||||||||||||||||||||  ||||  |||| ||||||||| ||||    
T  6316054 cggcaaatattattcatcgtcgagagggtaaaagaaacaccaacaactcgcagaaa 6316109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 36387102 - 36387029
Alignment:
Q  208 caaatattattcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaag 281  Q
    |||||||||||||| | | | |||||||||||  ||||||||||||||| ||||| |  ||||||| |||||||    
T  36387102 caaatattattcattgacaaaagggtgtaagacacacccacaactcgcgaaaaaagcaacagaaaaaacaaaag 36387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 18108368 - 18108400
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaat 149  Q
    ||||||||||||||| |||||||||||||||||    
T  18108368 cggatctagacattttatattagtgtggcaaat 18108400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 117 - 343
Target Start/End: Complemental strand, 26557679 - 26557453
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataacannnnnnnacggcaaatatta 216  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  26557679 cggatctagacatgtcatattagtgtggcaaaatttttaaagaaactataatacaattatactaaaaataatatataacatttttttacggcaaatatta 26557580  T
Q  217 ttcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgaatataggcggcgcacttaaacaccaaaa 316  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  26557579 ttcatcgtcgagagggtgtaagacgcacccacaacttgcggaaaaaacggcagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaa 26557480  T
Q  317 ccactcggtcatgatgccggaatatac 343  Q
    |||||||||||||||||||||||||||    
T  26557479 ccactcggtcatgatgccggaatatac 26557453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 117 - 330
Target Start/End: Complemental strand, 2125800 - 2125587
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataacannnnnnnacggcaaatatta 216  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  2125800 cggatctagacattgcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataacatttttttacggcaaatatta 2125701  T
Q  217 ttcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgaatataggcggcgcacttaaacaccaaaa 316  Q
    ||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  2125700 ttcattgtcgagagggtgtaagacacacccacaactcgcggaaaaaacggcagaaaatacaaaagtgatcgtatataggcggcacacttaaacaccaaaa 2125601  T
Q  317 ccactcggtcatga 330  Q
    ||||||||||||||    
T  2125600 ccactcggtcatga 2125587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 52119161 - 52119021
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaa---actataatacaattatactaaaaataatatataacannnnnnnacggcaaata 213  Q
    ||||||||||||| |||||||||||||||||| |||||||||||   ||||||||||| ||||||||||||||||||||||||       ||||||||||    
T  52119161 cggatctagacatgtcatattagtgtggcaaaatttttaaagaagaaactataatacagttatactaaaaataatatataacatttttttacggcaaata 52119062  T
Q  214 ttattcatcgtcgagagggtgtaagatgcacccacaactcg 254  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  52119061 ttattcatcgtcgagagggtgtaagacgcacccacaactcg 52119021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 118 - 265
Target Start/End: Complemental strand, 25911213 - 25911065
Alignment:
Q  118 ggatctagacatttcatattagtgtggcaaattttttaaagaaactataatac-aattatactaaaaataatatataacannnnnnnacggcaaatatta 216  Q
    ||||||| |||||| |||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||||||||       | | |||||||||    
T  25911213 ggatctacacattttatattagtgtgataaattttttaaagaaactaaaatacaaattatactaaaaataatatataacatttttttatgacaaatatta 25911114  T
Q  217 ttcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacg 265  Q
    |||||||| ||||||||||||||  | ||||||||||| ||||||||||    
T  25911113 ttcatcgttgagagggtgtaagacacgcccacaactcgtggaaaaaacg 25911065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 28210886 - 28210965
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataaca 196  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28210886 cggatctagacattgcatattagtgtggcaaaatttttaaagaaactataatacaattatactaaaaataatatataaca 28210965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 25070904 - 25070827
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataa 194  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25070904 cggatctagacattgcatattagtgtggcaaaatttttaaagaaactataatacaattatactaaaaataatatataa 25070827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 26903070 - 26903147
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataa 194  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  26903070 cggatctagacattgcatattagtgtggcaaaatttttaaagaaactataataaaattatactaaaaataatatataa 26903147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 36617970 - 36617893
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataa 194  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  36617970 cggatctagacattgcatattagtgtggcaaaatttttaaagaaactataataaaattatactaaaaataatatataa 36617893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 37586370 - 37586431
Alignment:
Q  204 acggcaaatattattcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacg 265  Q
    |||| ||||||||||||||| |||||||||||||||  | |||| |||||||||||||||||    
T  37586370 acggaaaatattattcatcgacgagagggtgtaagacactcccaaaactcgcggaaaaaacg 37586431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 24993608 - 24993664
Alignment:
Q  204 acggcaaatattattcatcgtcgagagggtgtaagatgcacccacaactcgcggaaa 260  Q
    |||| |||||||||||||||| ||||||||| ||||| |||| |||||| |||||||    
T  24993608 acggaaaatattattcatcgttgagagggtgaaagatacaccaacaacttgcggaaa 24993664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 117 - 343
Target Start/End: Original strand, 22787430 - 22787656
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataacannnnnnnacggcaaatatta 216  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  22787430 cggatctagacatgtcatattagtgtggcaaaatttttaaagaaactataatacaattatactaaaaataatatataacatttttttacggcaaatatta 22787529  T
Q  217 ttcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgaatataggcggcgcacttaaacaccaaaa 316  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  22787530 ttcatcgtcgagagggtgtaagacgcacccacaactcgcggaaaaaacggcagaaaatataaaagtgaccgtatataggcggcacacttaaacaccaaaa 22787629  T
Q  317 ccactcggtcatgatgccggaatatac 343  Q
    |||||||||||||||||||||||||||    
T  22787630 ccactcggtcatgatgccggaatatac 22787656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 118 - 343
Target Start/End: Original strand, 6154077 - 6154302
Alignment:
Q  118 ggatctagacatttcatattagtgtggcaaattttttaaagaaactataatac-aattatactaaaaataatatataacannnnnnnacggcaaatatta 216  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||       || ||||||||||    
T  6154077 ggatctagacatttcatattagtgtggcaaattttttaaggaaactataatacgaattatactaaaaataatatataacatttttttactgcaaatatta 6154176  T
Q  217 ttcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgaatataggcggcgcacttaaacaccaaaa 316  Q
    |||||||||||||||||||||||  | ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  6154177 ttcatcgtcgagagggtgtaagacacgcccacaactcgcggaaaaa-cggtagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaa 6154275  T
Q  317 ccactcggtcatgatgccggaatatac 343  Q
    ||||||| ||||||||||| |||||||    
T  6154276 ccactcgatcatgatgccgaaatatac 6154302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 7786475 - 7786598
Alignment:
Q  116 acggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataacannnnnnnacggcaaatatt 215  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||    
T  7786475 acggatctaaacattgcatattagtgtggcaaattttttaaagaaactataatataattatactaaaaataatatataacatttttttacggcaaatatt 7786574  T
Q  216 attcatcgtcgagagggtgtaaga 239  Q
    ||||||||||||||||||||||||    
T  7786575 attcatcgtcgagagggtgtaaga 7786598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 1017199 - 1017121
Alignment:
Q  116 acggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataa 194  Q
    |||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1017199 acggatttagacattgcatattagtgtggcaaaatttttaaagaaactataatacaattatactaaaaataatatataa 1017121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 11943671 - 11943720
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactata 166  Q
    ||||||||||||||| |||||||||||||||| |||| ||| ||||||||    
T  11943671 cggatctagacatttgatattagtgtggcaaaattttcaaacaaactata 11943720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 148
Target Start/End: Original strand, 18431245 - 18431276
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaa 148  Q
    ||||||||||||||||||||||||||||||||    
T  18431245 cggatctagacatttcatattagtgtggcaaa 18431276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 117 - 343
Target Start/End: Complemental strand, 16693642 - 16693416
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataacannnnnnnacggcaaatatta 216  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  16693642 cggatctagacatttcatattagtgtggcaaaatttttaaagaaactataatacaattatactaaaaataatatataacatttttttacggcaaatatta 16693543  T
Q  217 ttcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgaatataggcggcgcacttaaacaccaaaa 316  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||  ||||||    
T  16693542 ttcatcttcgagagggtgtaagacgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgtatataggtggcacacttaaaacccaaaa 16693443  T
Q  317 ccactcggtcatgatgccggaatatac 343  Q
    |||||||||||||||||||||||||||    
T  16693442 ccactcggtcatgatgccggaatatac 16693416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 18816832 - 18816909
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataa 194  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  18816832 cggatctagacattgcatattagtgtggcaaaatttttaaagaaactataataaaattatactaaaaataatatataa 18816909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 343
Target Start/End: Original strand, 10773907 - 10774041
Alignment:
Q  207 gcaaatattattcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgaatataggcggcgcactta 306  Q
    ||||||||||||||| | |||||||||||||||  ||||||| ||| ||| ||||| | ||||||| |||||||| | ||| ||||||| ||  ||| ||    
T  10773907 gcaaatattattcatggacgagagggtgtaagacacacccactacttgcg-aaaaaccagcagaaa-tacaaaaggggccgtatataggaggtacaccta 10774004  T
Q  307 aacaccaaaaccactcggtcatgatgccggaatatac 343  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10774005 aacaccaaaaccactcagtcatgatgccggaatatac 10774041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 5013728 - 5013765
Alignment:
Q  111 caggaacggatctagacatttcatattagtgtggcaaa 148  Q
    |||| |||||||||||||||||||||||||||||||||    
T  5013728 cagggacggatctagacatttcatattagtgtggcaaa 5013765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 595804 - 595756
Alignment:
Q  118 ggatctagacatttcatattagtgtggcaaattttttaaagaaactata 166  Q
    |||||||||||||| |||||||||||||||| |||| ||| ||||||||    
T  595804 ggatctagacatttgatattagtgtggcaaaattttcaaacaaactata 595756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 14902652 - 14902608
Alignment:
Q  215 tattcatcgtcgagagggtgtaagatgcacccacaactcgcggaa 259  Q
    ||||||||| |||||||||||||||  ||||| ||||||||||||    
T  14902652 tattcatcgacgagagggtgtaagacacacccgcaactcgcggaa 14902608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 119 - 343
Target Start/End: Complemental strand, 28536073 - 28535850
Alignment:
Q  119 gatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataacannnnnnnacggcaaatattatt 218  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       || ||||||||||||    
T  28536073 gatctaga-atttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaagaatatataacaattttttaccgcaaatattatt 28535975  T
Q  219 catcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgaatataggcggcgcacttaaacaccaaaacc 318  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  28535974 catcgtcaagagggtgtaagacgcacccacaactcgcagaaaaaacggcagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaacc 28535875  T
Q  319 actcggtcatgatgccggaatatac 343  Q
    ||||||||||||||||| |||||||    
T  28535874 actcggtcatgatgccgaaatatac 28535850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 120 - 343
Target Start/End: Original strand, 11462739 - 11462962
Alignment:
Q  120 atctagacatttcatattagtgtggcaaattttttaaagaaactataatacaa-ttatactaaaaataatatataacannnnnnnacggcaaatattatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||       |||  ||||||||||    
T  11462739 atctagacatttcatattagtgtggcaaattttttaaagaaactataatagaagttatacaaaaaataatatataacatttttt-acgaaaaatattatt 11462837  T
Q  219 catcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgaatataggcggcgcacttaaacaccaaaacc 318  Q
    || ||||||||||||||||||  | ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  11462838 caccgtcgagagggtgtaagacacgcccacaactcgaggaaaagacggcagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaacc 11462937  T
Q  319 actcggtcatgatgccggaatatac 343  Q
    ||||| |||||||||||||||||||    
T  11462938 actcgatcatgatgccggaatatac 11462962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 45486388 - 45486311
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataa 194  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  45486388 cggatctagacattgcatattagtgtggcaaaatttttaaagaaactataataaaattatactaaaaataatatataa 45486311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 31550138 - 31550084
Alignment:
Q  210 aatattattcatcgtcgagagggtgtaagatgcacccacaactcgcggaaaaaac 264  Q
    |||||||||||||| ||||||||| |||||  |||||||| ||||||||||||||    
T  31550138 aatattattcatcgacgagagggtttaagacacacccacagctcgcggaaaaaac 31550084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 39376852 - 39376938
Alignment:
Q  9 aaagaaatgtagaaaaagcacaaaaatttgttagctgtgacaaacgagaagcagccgcagtcaattcag-aagtacgacgtgaacagta 96  Q
    ||||||||||| |||||||||||||| | |||| |  |||||||||||  |||||| ||||||||| || |||||| ||||||||||||    
T  39376852 aaagaaatgtaaaaaaagcacaaaaaatggttacc--tgacaaacgaggtgcagccccagtcaattgagcaagtacaacgtgaacagta 39376938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 38663399 - 38663277
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataacannnnnnnacggcaaatatta 216  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  38663399 cggatctagacattgcatattagtgtggcaaaatttttaaagaaactataatacaattatactaaaaataatatataacatttttttacggcaaatatta 38663300  T
Q  217 ttcatcgtcgagagggtgtaaga 239  Q
    |||||||||||||||||||||||    
T  38663299 ttcatcgtcgagagggtgtaaga 38663277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 39781191 - 39781114
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataa 194  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39781191 cggatctagacattgcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataa 39781114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 43266127 - 43266050
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataa 194  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43266127 cggatctagacattgcatattagtgtggcaaattttttaaagaaactataatacaattatactaaaaataatatataa 43266050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 235
Target Start/End: Complemental strand, 25294619 - 25294588
Alignment:
Q  204 acggcaaatattattcatcgtcgagagggtgt 235  Q
    ||||||||||||||||||||||||||||||||    
T  25294619 acggcaaatattattcatcgtcgagagggtgt 25294588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 24731595 - 24731541
Alignment:
Q  204 acggcaaatattattcatcgtcgagagggtgtaagatgcacccacaactcgcgga 258  Q
    |||| ||| |||||||||| ||||||||||| ||||| |||| ||||||||||||    
T  24731595 acggaaaacattattcatcatcgagagggtgaaagatacaccaacaactcgcgga 24731541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 42896855 - 42896904
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactata 166  Q
    ||||||||||||||| ||||| ||||||||||  ||||||| ||||||||    
T  42896855 cggatctagacatttgatattggtgtggcaaaacttttaaaaaaactata 42896904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 46357788 - 46357837
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactata 166  Q
    ||||||||||||||| ||||| ||||||||||  ||| ||||||||||||    
T  46357788 cggatctagacatttgatattggtgtggcaaaactttcaaagaaactata 46357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 12931634 - 12931590
Alignment:
Q  215 tattcatcgtcgagagggtgtaagatgcacccacaactcgcggaa 259  Q
    ||||||||| |||||||||||||||  ||||| ||||||||||||    
T  12931634 tattcatcgacgagagggtgtaagacacacccgcaactcgcggaa 12931590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 8904461 - 8904393
Alignment:
Q  117 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataata-caattatactaaaaa 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  8904461 cggatctagacatttcatattagtgtggcaaattttttaaagaaactataatagaaattatactaaaaa 8904393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 45065888 - 45065923
Alignment:
Q  118 ggatctagacatttcatattagtgtggcaaattttt 153  Q
    ||||||||||||||||||||||||||||||| ||||    
T  45065888 ggatctagacatttcatattagtgtggcaaaatttt 45065923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 344
Target Start/End: Original strand, 41793297 - 41793437
Alignment:
Q  204 acggcaaatattattcatcgtcgagagggtgtaagatgcacccacaactcgcggaaa-aaacggcagaaaatacaaaagtgaccgaatataggcggcgca 302  Q
    |||||||||||||||||||| |||||||||||||||  | |||| |||||||||||| || || ||| |||||||| |||| |||||| |||||||| ||    
T  41793297 acggcaaatattattcatcgacgagagggtgtaagacactcccaaaactcgcggaaacaaccgacag-aaatacaacagtggccgaatttaggcggcaca 41793395  T
Q  303 cttaaacaccaaaaccactcggtcatgatgccggaatatact 344  Q
    |  |||| || ||||||||||  ||||||||||| |||||||    
T  41793396 ccaaaactcccaaaccactcgaacatgatgccgggatatact 41793437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 4075409 - 4075439
Alignment:
Q  164 ataatacaattatactaaaaataatatataa 194  Q
    |||||||||||||||||||||||||||||||    
T  4075409 ataatacaattatactaaaaataatatataa 4075439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 21610180 - 21610136
Alignment:
Q  215 tattcatcgtcgagagggtgtaagatgcacccacaactcgcggaa 259  Q
    ||||||||| |||||||||||||||  ||||| ||||||||||||    
T  21610180 tattcatcgacgagagggtgtaagacacacccgcaactcgcggaa 21610136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 332 - 276
Alignment:
Q  204 acggcaaatattattcatcgtcgagagggtgtaagatgcacccacaactcgcggaaa 260  Q
    |||| |||||||||||||||| ||||||||| ||||| |||| |||||| |||||||    
T  332 acggaaaatattattcatcgttgagagggtgaaagatacaccaacaacttgcggaaa 276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 148
Target Start/End: Complemental strand, 154 - 124
Alignment:
Q  118 ggatctagacatttcatattagtgtggcaaa 148  Q
    |||||||||||||||||||||||||||||||    
T  154 ggatctagacatttcatattagtgtggcaaa 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 48539 - 48495
Alignment:
Q  215 tattcatcgtcgagagggtgtaagatgcacccacaactcgcggaa 259  Q
    ||||||||| |||||||||||||||  ||||| ||||||||||||    
T  48539 tattcatcgacgagagggtgtaagacacacccgcaactcgcggaa 48495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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