View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15485_high_14 (Length: 355)
Name: NF15485_high_14
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15485_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 37087427 - 37087074
Alignment:
| Q |
1 |
tcgtaacctcaagtgacggagttcaaatcccctcagagacaattctaaaaatggtcattagtactagattaattaataataataattgtgaatacaactt |
100 |
Q |
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| T |
37087427 |
tcgtaacctcaagtgatggagttcaaatcccctcggagacagttctaaaaatggtcattagtactagattaattaataataataattgtgaatacaactt |
37087328 |
T |
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| Q |
101 |
ctacagaataagaaaagtgtgtgctaataaattcaataaaaatagggatatac----tagtttataaaaatattcaaagcttgaaaattttaccactgta |
196 |
Q |
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| T |
37087327 |
ccacagaattagaaaagtgtgtgctaataaattcaataaaaatagggatatacatactagtttataaaaatattcaaagcttgaaaattttaccactgta |
37087228 |
T |
|
| Q |
197 |
gctatggttgcagatatggcaacagttaagtatctgccaagttttgcatcagctagaaaaccaccaagaaggccaagcaagttgagagttcccataaagt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37087227 |
gctatggttgcagatatggcaacagttaagtatctgccaagttttgcatcagctagaaaaccaccaagaaggccaagcaagttgagagttcccataaagt |
37087128 |
T |
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| Q |
297 |
tggtaactatggtagcagagctagctgaatggagatgtaaatctccaaccaagt |
350 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37087127 |
tggtaactatggtagcagaactagctgaatggagatgtaaatctccaaccaagt |
37087074 |
T |
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