View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15485_high_20 (Length: 247)

Name: NF15485_high_20
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15485_high_20
NF15485_high_20
[»] chr7 (6 HSPs)
chr7 (13-237)||(21769188-21769417)
chr7 (15-238)||(18395161-18395375)
chr7 (55-243)||(8731349-8731530)
chr7 (55-243)||(28610414-28610595)
chr7 (177-237)||(2582218-2582278)
chr7 (181-228)||(10295474-10295521)
[»] chr2 (6 HSPs)
chr2 (110-243)||(39816224-39816357)
chr2 (55-128)||(42275729-42275804)
chr2 (73-228)||(35007092-35007247)
chr2 (55-118)||(42277955-42278020)
chr2 (1-39)||(39816191-39816229)
chr2 (114-243)||(42278032-42278152)
[»] chr4 (2 HSPs)
chr4 (55-243)||(13776278-13776459)
chr4 (55-243)||(13773980-13774161)
[»] chr1 (5 HSPs)
chr1 (55-243)||(10908937-10909118)
chr1 (55-243)||(10911181-10911362)
chr1 (73-195)||(4820952-4821074)
chr1 (73-195)||(4832752-4832874)
chr1 (55-97)||(13011664-13011708)
[»] chr3 (2 HSPs)
chr3 (55-243)||(4530664-4530845)
chr3 (73-243)||(4532963-4533124)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 21769188 - 21769417
Alignment:
Q  13 gatgagcctcatttatactactctagtaaggctc---atacaaagatctagaaacatttaatga--ctacttaattacaagaactatctagagatgctaa 107  Q
    ||||||||| |||||||||||||||||||||||    ||| |||| |||||||||||||| |||  ||||||||||||||||||||||||||||| ||||    
T  21769188 gatgagccttatttatactactctagtaaggcttcagatagaaaggtctagaaacatttagtgatactacttaattacaagaactatctagagatactaa 21769287  T
Q  108 tatctagttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctcc 207  Q
    ||||||||||||||  |||||||||||||  ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21769288 tatctagttcatgtagctagaaagttctaaggatattaagatgctcctagttattatgactttatttagtagtattcttgaaagttctaaaatattctcc 21769387  T
Q  208 acatcttgaaagttccataatgttctatat 237  Q
    ||||||||||||||||||||||||||||||    
T  21769388 acatcttgaaagttccataatgttctatat 21769417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 18395375 - 18395161
Alignment:
Q  15 tgagcctcatttatactactctagtaaggctcatacaaagatctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatct 112  Q
    ||||||| |||||||||||||||| ||||||| ||||   ||||||||||||||||||  ||||||||||||||||||||||| |||||| |||||||||    
T  18395375 tgagccttatttatactactctaggaaggctc-tacatt-atctagaaacatttaatgctactacttaattacaagaactatcaagagattctaatatct 18395278  T
Q  113 agttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatc 212  Q
    ||||||||| |||||||||||||||||||   || ||| ||||| | |  |||||||||||| ||| ||||||||||||||||         || |||||    
T  18395277 agttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgactttattttgtaatattcttgaaagttct---------tcgacatc 18395187  T
Q  213 ttgaaagttccataatgttctatatt 238  Q
    ||||||||||||||||||||||||||    
T  18395186 ttgaaagttccataatgttctatatt 18395161  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 8731349 - 8731530
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  8731349 atctagaaacatttaatgctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 8731448  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  ||||| |||||| ||| ||||||||||||||||         || ||||||| ||||||||||||||||||||||| ||||    
T  8731449 cctaatcactatgacattattttgtaatattcttgaaagttct---------tcgacatcttaaaagttccataatgttctatattattct 8731530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 28610414 - 28610595
Alignment:
Q  55 atctagaaacatttaatga--ctacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    ||||||||||||||||||   ||| ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  28610414 atctagaaacatttaatgctgctaattaattacaagaattatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 28610513  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  |||||||||||| ||| |||| ||||||| |||         || |||||||||||||||||||||||| |||||| ||||    
T  28610514 cctaatcactatgactttattttgtaatatttttgaaagctct---------tcgacatcttgaaagttccataatgttatatattcttct 28610595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 2582278 - 2582218
Alignment:
Q  177 tagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatat 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  2582278 tagtattcttgaaagttctaaaatattctccacatcttgaaagttctataatgttttatat 2582218  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 10295521 - 10295474
Alignment:
Q  181 attcttgaaagttctaaaatattctccacatcttgaaagttccataat 228  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  10295521 attcttgaaagttctaaaatattctccacatcttgaaaattctataat 10295474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 110 - 243
Target Start/End: Original strand, 39816224 - 39816357
Alignment:
Q  110 tctagttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccac 209  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39816224 tctagttcatgttcctagaaagttctagagatataaaaatgctcatagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccac 39816323  T
Q  210 atcttgaaagttccataatgttctatatttttct 243  Q
    ||||||||||||||||||||||||||||| ||||    
T  39816324 atcttgaaagttccataatgttctatattattct 39816357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 42275729 - 42275804
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctaga 128  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  42275729 atctagaaacatttaatgctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctaga 42275804  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 228
Target Start/End: Complemental strand, 35007247 - 35007092
Alignment:
Q  73 actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttat 172  Q
    ||||||| ||| |||||| ||||||||||| ||| ||||| ||| ||||  || |||||||||||| || | || ||| || ||||||| ||||||||||    
T  35007247 actactttattgcaagaaatatctagagatactagtatctggttgatgtagctggaaagttctagatatgttaagatgatcttagttattatgactttat 35007148  T
Q  173 ttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataat 228  Q
     |  ||  |||||||||||||||| ||||||||  ||||||||||||||| |||||    
T  35007147 atgttaacattcttgaaagttctataatattctgtacatcttgaaagttctataat 35007092  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 42277955 - 42278020
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttca 118  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||||||||||    
T  42277955 atctagaaacatttaatgctactacttaattacaagaactatctagagattttaatatctagttca 42278020  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39816191 - 39816229
Alignment:
Q  1 tatgtcaaaacagatgagcctcatttatactactctagt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  39816191 tatgccaaaacagatgagcctcatttatactactctagt 39816229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 42278032 - 42278152
Alignment:
Q  114 gttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatct 213  Q
    |||||||| |||||||||||||||||||   || ||| ||||| | |  ||||| |||||| ||| ||||||||||||||||         || ||||||    
T  42278032 gttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgacattattttgtaatattcttgaaagttct---------tcgacatct 42278122  T
Q  214 tgaaagttccataatgttctatatttttct 243  Q
    | ||||||||||||||||||||||| ||||    
T  42278123 taaaagttccataatgttctatattattct 42278152  T

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Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 13776459 - 13776278
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  13776459 atctagaaacatttaatgctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 13776360  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  ||||| |||||| ||| ||||||||||||||||         || ||||||||||||||||||||||||||||||| ||||    
T  13776359 cctaatcactatgacattattttgtaatattcttgaaagttct---------tcgacatcttgaaagttccataatgttctatattattct 13776278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 13774161 - 13773980
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  13774161 atctagaaacatttaattctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 13774062  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  ||||| |||||| ||| ||||||||||||||||         || ||||||||||||| ||||||||||||||||| ||||    
T  13774061 cctaatcactatgacattattttgtaatattcttgaaagttct---------tcgacatcttgaaagtcccataatgttctatattattct 13773980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 10909118 - 10908937
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  10909118 atctagaaacatttaatgctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 10909019  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  ||||| |||||| ||| ||||||||||||||||         || ||||||| ||||||||||||||||||||||| ||||    
T  10909018 cctaatcactatgacattattttgtaatattcttgaaagttct---------tcgacatcttaaaagttccataatgttctatattattct 10908937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 10911362 - 10911181
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  10911362 atctagaaacatttaatgctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 10911263  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  ||||| |||||| ||| ||||||||||||||||         || ||||||| ||||||||||||||||||||||| ||||    
T  10911262 cctaatcactatgacattattttgtaatattcttgaaagttct---------tcgacatcttaaaagttccataatgttctatattattct 10911181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 4821074 - 4820952
Alignment:
Q  73 actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttat 172  Q
    ||||||| |||||||||| ||| |||| || ||| ||||||||| ||||  ||| |||||||||||| ||| || |||||||||||||| ||||||||||    
T  4821074 actactttattacaagaaatatttagaaatactagtatctagtttatgtagctaaaaagttctagaggtatcaagatgctcctagttattatgactttat 4820975  T
Q  173 ttagtagtattcttgaaagttct 195  Q
    |||||||||| | |||| |||||    
T  4820974 ttagtagtatacatgaatgttct 4820952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 4832874 - 4832752
Alignment:
Q  73 actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttat 172  Q
    ||||||| |||||||||| ||| |||| || ||| ||||||||| ||||  ||| |||||||||||| ||| || |||||||||||||| ||||||||||    
T  4832874 actactttattacaagaaatatttagaaatactagtatctagtttatgtagctaaaaagttctagaggtatcaagatgctcctagttattatgactttat 4832775  T
Q  173 ttagtagtattcttgaaagttct 195  Q
    |||||||||| | |||| |||||    
T  4832774 ttagtagtatacatgaatgttct 4832752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 13011708 - 13011664
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatcta 97  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  13011708 atctagaaacatttaatgctactacttaattacaagaactatcta 13011664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 4530845 - 4530664
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  4530845 atctagaaacatttaattctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 4530746  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  | ||| |||||| ||| ||||||||||||||||         || ||||||||||||||||||||||||||||||| ||||    
T  4530745 cctaatcactacgacattattttgtaatattcttgaaagttct---------tcgacatcttgaaagttccataatgttctatattattct 4530664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 243
Target Start/End: Complemental strand, 4533124 - 4532963
Alignment:
Q  73 actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttat 172  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| ||||| | |  ||||| ||||    
T  4533124 actacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgacattat 4533025  T
Q  173 ttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    || ||| ||||||||||||||||         || ||||||||||||||||||||||||||||||| ||||    
T  4533024 tttgtaatattcttgaaagttct---------tcgacatcttgaaagttccataatgttctatattattct 4532963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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