View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15485_high_23 (Length: 209)
Name: NF15485_high_23
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15485_high_23 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 1888110 - 1887931
Alignment:
| Q |
12 |
gagatgaagataagcatgatatcgaagaagagatgttggattactcttctccagaactgaaaggaggagctcacttggatttttctctgcggctgctgat |
111 |
Q |
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| T |
1888110 |
gagatcaagataagcatgatatcgaagaagagatgttggattactctcctctagaactgaaaggaggagctcacttggatttttctctgcggctgctgat |
1888011 |
T |
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| Q |
112 |
ccttttgggggagcaaatatgaatctcttggtatgtaaaacctatatgtatcatatttgaccaatatagagactcaagtt |
191 |
Q |
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| T |
1888010 |
ccttttgggggagcaaatatgaatctcttggtatgtaaaacctatatgtatcatatttgaccaatatagagactcaagtt |
1887931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 1670377 - 1670556
Alignment:
| Q |
12 |
gagatgaagataagcatgatatcgaagaagagatgttggattactcttctccagaactgaaaggaggagctcacttggatttttctctgcggctgctgat |
111 |
Q |
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| T |
1670377 |
gagatcaagataagcatgatatcgaagaagagatgttggattactccgctgtagaactgaaaggaggagctcacttggatttttctctgcggctgctgat |
1670476 |
T |
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| Q |
112 |
ccttttgggggagcaaatatgaatctcttggtatgtaaaacctatatgtatcatatttgaccaatatagagactcaagtt |
191 |
Q |
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| T |
1670477 |
ccttttgggggagcaaatacgaatctcttggtatgtaaaacctatatgtatcatatttgaccaatatagagactcaagtt |
1670556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 1891316 - 1891178
Alignment:
| Q |
18 |
aagataagcatgatatcgaagaagagatgttggattactcttctccagaactgaaaggaggagctcacttggatttttctctgcggctgctgatcctttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| | | || |||| |||||||||| |
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| T |
1891316 |
aagataagcatgatatcgaagaagagatgttggattactctcctccagagctgaaaggaggaggtcacttggatttgttaccgcagctgttgatcctttt |
1891217 |
T |
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| Q |
118 |
gggggagcaaatatgaatctcttggtatgtaaaacctat |
156 |
Q |
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| T |
1891216 |
gggggagcaaatacggatctcttggtatataaagcctat |
1891178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 8270 - 8436
Alignment:
| Q |
12 |
gagatgaagataagcatgatatcgaagaagagatgttggattactcttctccagaactgaaaggaggagctcacttggatttttctctgcggctgctgat |
111 |
Q |
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| T |
8270 |
gagatcaagataagcatgatatcaaagaagagatgttgggttactcttctccagaactgaaaggaggagctcacttggatttttctccgcggctgctgat |
8369 |
T |
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| Q |
112 |
ccttttgggggagcaaatatgaatctcttggtatgtaaaacctatatgtatcatatttgaccaatat |
178 |
Q |
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| T |
8370 |
ccttttgggggagcaaatacgaatctattggtatgtaatacacctatgtatcatattttactaatat |
8436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 5996940 - 5996766
Alignment:
| Q |
12 |
gagatgaagataagcatgatatcgaagaagagatgttggattactcttctccagaactgaaaggaggagctcacttggatttttctctgcggctgctgat |
111 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| | || || ||||||||| |
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| T |
5996940 |
gagatcaagataagcatgatatcgaagaagagatgttggattactctcctccagagctgaaaggaggtgctcacttggatttgtttccgcagctgctgat |
5996841 |
T |
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| Q |
112 |
ccttttgggggagcaaatatgaatctcttggtatgtaaaacctatatgtatcatatttgaccaatatagagactcaagtt |
191 |
Q |
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| T |
5996840 |
ccttttgggggagcaaatatggatctcttggtatgtaaaacctata-----cgtatttgaccaataaagagactcgagtt |
5996766 |
T |
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