View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15485_high_7 (Length: 451)
Name: NF15485_high_7
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15485_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 39816042 - 39815624
Alignment:
| Q |
18 |
acatagtttataactcagaaattcatgcataaattccaatgaatacggcataatggaagttatcatccttctgtgattgaaaaaccggaattacgcgaca |
117 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| |
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| T |
39816042 |
acatagtttataactcaagaattcatgcataaattccaatgtatacggcataatggaaattatcatgcttctgtgattgaaaaacaggaattacgcgaca |
39815943 |
T |
|
| Q |
118 |
atcattcacccccgcttcttgtcttgttcagccctcactagatcgcatctcatctccctgtccaaaccaaatcgcgtaccaaacctcatccatatcattt |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39815942 |
atcattcacccccgcttcgtgtcttgttcagccctcactagatcgcatctcatctccctgtccaaaccaaatcgtgtaccaaacctcatccatatcattt |
39815843 |
T |
|
| Q |
218 |
tgttctctttgaaactgtaagaacatgcttactcccgctactttgtttatgttattgatgaatgattgcaatcatgttttggttgaaatttataacataa |
317 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39815842 |
tgttctctttgaaactgtaagaatatgcttactcccgctactttgtttatgttattgatgaatgattgcaatcatgttttggttgaaatttataacataa |
39815743 |
T |
|
| Q |
318 |
tcgtatgagttatgatattgatccttaagatcagtatgtcagttgatggttaattttatggcattttcttgtgatggtgaatatcataaacaatatgcta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39815742 |
tcgtatgagttatgatattgatccttaagatcagtatgtcagttgatggttaattttatggcattttcttgtgatggtgaatatcataaacaatatgcta |
39815643 |
T |
|
| Q |
418 |
ataatcgtgatcatgaatc |
436 |
Q |
| |
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||||||||||||||||||| |
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| T |
39815642 |
ataatcgtgatcatgaatc |
39815624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 23 - 436
Target Start/End: Complemental strand, 39806782 - 39806351
Alignment:
| Q |
23 |
gtttataactcagaaattcatgcataaattccaatgaatacggcataatggaagttatcatccttctgtgattgaaaaaccggaattacgcgacaatcat |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| || || ||||||||| ||||||| |||||| ||||||||||| ||||||| ||| ||||||| |
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| T |
39806782 |
gtttataactcaaaaattcatgcataaattccaatgtgtagggaataatggaaattatcatgcttctgagattgaaaaacaggaattatgcggcaatcat |
39806683 |
T |
|
| Q |
123 |
tcacccccgcttcttgtcttgttcagccctcacta-------gatcgcatctcatctccctgtccaaaccaaatcgcgtacca-----aacctcatccat |
210 |
Q |
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||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | ||| || ||||| |
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| T |
39806682 |
tcacctccgcttcgcgtcttgttcagccctcactagaagctcgatcgcatctcatctccctgtcctcaccaaatcgcgtacgaacaacaacatcctccat |
39806583 |
T |
|
| Q |
211 |
atcattttgttctctttgaaactgtaagaacatgcttactcccgctactttgtttatgttattgatgaatgattgcaatcatgttttggttgaaatttat |
310 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| | || ||||| |||||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
39806582 |
atcattttgttctctttgaaactgtaagaatatgcttactccctcaacattgtt--tgttatcgatgaatgattacaatcatgttttggttgaaatttat |
39806485 |
T |
|
| Q |
311 |
aacataatcg--------tatgagttatgatattgatccttaagatcagtatgtcagttgatggttaattttatggcattttcttgtgatggtgaatatc |
402 |
Q |
| |
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|||||||| | ||| |||||| |||||||| || || | || |||||| |||||||||||||||||||| || ||||||||| ||||||| |
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| T |
39806484 |
aacataatagtatcagactatcagttataatattgatttttgagctgagaatgtcaattgatggttaattttatggctattcattgtgatggagaatatc |
39806385 |
T |
|
| Q |
403 |
ataaacaatatgctaataatcgtgatcatgaatc |
436 |
Q |
| |
|
||||||| |||| |||| ||| |||||||||||| |
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|
| T |
39806384 |
ataaacattatgttaatgatcatgatcatgaatc |
39806351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 39923316 - 39922894
Alignment:
| Q |
18 |
acatagtttataactcagaaattcatgcataaattccaatgaatacggcataatggaagttatcatccttctgtgattgaaaaaccggaattacgcgaca |
117 |
Q |
| |
|
||||||||||||||||| |||||| | || |||||||||| || || ||||||||| ||||||| |||||| ||||||||||| ||||||| ||| || |
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| T |
39923316 |
acatagtttataactcaagaattcaagtatgaattccaatgtgtagggaataatggaaattatcatgcttctgagattgaaaaacaggaattatgcgcca |
39923217 |
T |
|
| Q |
118 |
atcattcacccccgcttcttgtcttgttcagccctcactaga-------tcgcatctcatctccctgtccaaaccaaatcgcgtaccaa-----acctca |
205 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| ||||| |||||||||||||| |||||| ||||||| || ||| || |||||| |
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| T |
39923216 |
atcattcacctccgcttcacgtcttgttcagccctcgctagaagctcgatcgcatctcatctcactgtcctcaccaaattgcatacaaacagaaacctca |
39923117 |
T |
|
| Q |
206 |
tccatatcattttgttctctttgaaactgtaagaacatgcttactcccgctactttgtttatgttattgatgaatgattgcaatca--------tgtttt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| || |
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| T |
39923116 |
tccatatcattttgttctctttgaaactgtaagaacatgcttactccctctactttgtttatgttattgatgaatgattgcaataatgcaattgtgtgtt |
39923017 |
T |
|
| Q |
298 |
ggttgaaa---tttataacataatcgtatgagttatgatattgatccttaagatcagtatgtcagttgatggttaattttatggcattttcttgtgatgg |
394 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||| | |||||||| || || | || |||||| |||||||||||||||||||| ||| |||||||| |
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| T |
39923016 |
ggttgaaatattatataacataatagtatgagttgtaatattgatttttgagctgagaatgtcaattgatggttaattttatggcttttcattgtgatg- |
39922918 |
T |
|
| Q |
395 |
tgaatatcataaacaatatgctaat |
419 |
Q |
| |
|
||| |||||||||||||||||||| |
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|
| T |
39922917 |
-gaaaatcataaacaatatgctaat |
39922894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 39903641 - 39903504
Alignment:
| Q |
18 |
acatagtttataactcagaaattcatgcataaattccaatgaatacggcataatggaagttatcatccttctgtgattgaaaaaccggaattacgcgaca |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| || || | ||||||| ||||||| |||||| ||||||||||| ||||||| || ||| |
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|
| T |
39903641 |
acatagtttataactcaagaattcatgcataaattccaatgtgtagggaacaatggaaattatcatgcttctgagattgaaaaacaggaattatgcaaca |
39903542 |
T |
|
| Q |
118 |
atcattcacccccgcttcttgtcttgttcagccctcac |
155 |
Q |
| |
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|||||||||| ||||||| |||||||||| ||||||| |
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| T |
39903541 |
atcattcacctccgcttcgcgtcttgttcatccctcac |
39903504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 353 - 419
Target Start/End: Complemental strand, 39903326 - 39903260
Alignment:
| Q |
353 |
atgtcagttgatggttaattttatggcattttcttgtgatggtgaatatcataaacaatatgctaat |
419 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
39903326 |
atgtcaattgatggttaattttatggctttttattgtgatggagaatatcataaacaatatgctaat |
39903260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 199 - 339
Target Start/End: Complemental strand, 4753752 - 4753614
Alignment:
| Q |
199 |
aacctcatccatatcattttgttctctttgaaactgtaagaacatgcttactcccgctactttgtttatgttattgatgaatgattgcaatcatgttttg |
298 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||| |||| || |||| |
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|
| T |
4753752 |
aacctcatccctctcatttccctctctttgaaactgtaagaatatgcttaatccctctattttgtttatgttattgatgaatgatttcaattgtg-tttg |
4753654 |
T |
|
| Q |
299 |
gttgaaatttataacataatcgtatgagttatgatattgat |
339 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||||||| |
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|
| T |
4753653 |
gttg-catttatatcataatagtatgagttatgatattgat |
4753614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 4740627 - 4740560
Alignment:
| Q |
221 |
tctctttgaaactgtaagaacatgcttactcccgctactttgtttatgttattgatgaatgattgcaa |
288 |
Q |
| |
|
|||||||||||| ||||||| |||| || ||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
4740627 |
tctctttgaaaccgtaagaatatgcctattccttctactttgtttatgttattgatgattgattgcaa |
4740560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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