View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15485_low_1 (Length: 681)
Name: NF15485_low_1
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15485_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 29475927 - 29475587
Alignment:
| Q |
18 |
aacttggatatgaaattagtagcaaacttaggatttccctactcacaatgctgattggacttgaagctctttgttttcgattactcaagtcatatgagtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29475927 |
aacttggatatgaaattagtagcaaacttaggatttccctactcaaaatgctgattggacttgaagctctatgttttcgattactcaagtcatatgagtt |
29475828 |
T |
|
| Q |
118 |
tttcagaaactaagatgaaaagcacaattaaactttaggttgagtcacctttagtgtgtaatttctgtttgtcttggtcttctaaaattggatggtcgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
29475827 |
tttcagaaactaagatgaaaagcacaattaaactttaggttgagtcacctttagtgtgtaatttctgtttgtcttgatcttctaaaattggatggttgat |
29475728 |
T |
|
| Q |
218 |
gtatgaattggaacaaacattattgatttcgaaattcttagcattttttagatgaagacctgcagcagaaatttatttacaactttcttaagaactttag |
317 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29475727 |
gtatgaattggaacaaacattatcgatttcaaaattcttagcattttttagatgaagacctgcagcagaaatttatttacaactttcttaagacctttag |
29475628 |
T |
|
| Q |
318 |
cttagttaacaagattaaactccaacttcttctgcacatca |
358 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
29475627 |
cttagttaacaagataaaactccaactccttatgcacatca |
29475587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 458 - 674
Target Start/End: Complemental strand, 29475482 - 29475272
Alignment:
| Q |
458 |
aaattctaaaccttactaaaattaccagttcttgttaccttgcaggtttcacatgcggttcctgaagtttttcatgtatggacgacatggagactagttg |
557 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||||||||||| || ||| |||||||| |||||| |
|
|
| T |
29475482 |
aaattctaaaccttactaaaattaacagttctttttaccttgcaggttcgacttgcggatcctgaagtttttaatctat------catggagagtagttg |
29475389 |
T |
|
| Q |
558 |
gccttatatcaagtatagttggtctggtttgttatgctctgagcccttctttcaatcgattaattagaagatggaaagctttccagttctttctttatgg |
657 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| ||||||||||||| |
|
|
| T |
29475388 |
gccttatgtcaagtatagtcggtctggtttgttatgctctgagcccttctttcaatcgattaattggaaaattgaaagctttccagatctttctttatgg |
29475289 |
T |
|
| Q |
658 |
ggtgttgtcctttgcta |
674 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
29475288 |
ggtgttgtccttagcta |
29475272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 545 - 662
Target Start/End: Complemental strand, 29529077 - 29528960
Alignment:
| Q |
545 |
tggagactagttggccttatatcaagtatagttggtctggtttgttatgctctgagcccttctttcaatcgattaattagaagatggaaagctttccagt |
644 |
Q |
| |
|
|||||| ||||||| ||||| |||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||| |
|
|
| T |
29529077 |
tggagagtagttgggcttatgtcaagtgtagttggcctgttatgttatgctctgagcccttctttcaatcgattaattggaaggtggaaacctttcaagt |
29528978 |
T |
|
| Q |
645 |
tctttctttatggggtgt |
662 |
Q |
| |
|
||||||| ||||| |||| |
|
|
| T |
29528977 |
tctttctctatggagtgt |
29528960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 545 - 674
Target Start/End: Original strand, 29612391 - 29612520
Alignment:
| Q |
545 |
tggagactagttggccttatatcaagtatagttggtctggtttgttatgctctgagcccttctttcaatcgattaattagaagatggaaagctttccagt |
644 |
Q |
| |
|
|||||||||||||||||| | |||||| || |||| || | |||||||||| |||||||||||||||||| |||||| |||||||||| | || ||| |
|
|
| T |
29612391 |
tggagactagttggccttgtgtcaagtgtatttggcctattgtgttatgctcagagcccttctttcaatcgtttaattggaagatggaacattgtcaagt |
29612490 |
T |
|
| Q |
645 |
tctttctttatggggtgttgtcctttgcta |
674 |
Q |
| |
|
||| ||| ||||| ||||| ||||| |||| |
|
|
| T |
29612491 |
tctctctgtatggagtgttttccttggcta |
29612520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 538 - 669
Target Start/End: Original strand, 28183531 - 28183662
Alignment:
| Q |
538 |
gacgacatggagactagttggccttatatcaagtatagttggtctggtttgttatgctctgagcccttctttcaatcgattaattagaagatggaaagct |
637 |
Q |
| |
|
|||||| |||||| || |||| |||| ||| |||| ||||| || | ||||||||||| ||||||||||||||||||||| || |||| ||||| || |
|
|
| T |
28183531 |
gacgacttggagagtaattggttttatgtcatgtattgttggcttgttatgttatgctctaagcccttctttcaatcgattatttggaaggtggaatcct |
28183630 |
T |
|
| Q |
638 |
ttccagttctttctttatggggtgttgtcctt |
669 |
Q |
| |
|
||| || ||||||| |||| | ||||||||| |
|
|
| T |
28183631 |
ttcaaggtctttctctatgtagcgttgtcctt |
28183662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 669
Target Start/End: Complemental strand, 29527032 - 29526951
Alignment:
| Q |
588 |
gttatgctctgagcccttctttcaatcgattaattagaagatggaaagctttccagttctttctttatggggtgttgtcctt |
669 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || |||| ||||| ||||| || ||||||| |||| ||||||||||| |
|
|
| T |
29527032 |
gttatgctctaggcccttctttcaatcgattatttggaaggtggaatcctttcaaggtctttctctatgtagtgttgtcctt |
29526951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 669
Target Start/End: Original strand, 29524648 - 29524726
Alignment:
| Q |
591 |
atgctctgagcccttctttcaatcgattaattagaagatggaaagctttccagttctttctttatggggtgttgtcctt |
669 |
Q |
| |
|
|||||| ||||| |||||||||||| || ||| ||| |||||| || || |||||||||| ||||||||||| ||||| |
|
|
| T |
29524648 |
atgctcagagccattctttcaatcgtttcattggaaaatggaacactctcaagttctttctgtatggggtgttttcctt |
29524726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University