View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15485_low_10 (Length: 421)

Name: NF15485_low_10
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15485_low_10
NF15485_low_10
[»] chr7 (2 HSPs)
chr7 (18-404)||(45676079-45676466)
chr7 (99-220)||(45437737-45437858)
[»] chr1 (6 HSPs)
chr1 (96-238)||(37962620-37962762)
chr1 (99-217)||(38269740-38269858)
chr1 (337-404)||(51044460-51044527)
chr1 (337-403)||(37962857-37962923)
chr1 (138-234)||(51044130-51044226)
chr1 (351-391)||(16127418-16127458)
[»] chr8 (7 HSPs)
chr8 (338-403)||(5849863-5849928)
chr8 (338-403)||(5921232-5921297)
chr8 (338-403)||(5949124-5949189)
chr8 (346-403)||(5960389-5960446)
chr8 (338-403)||(5984652-5984717)
chr8 (338-400)||(5843124-5843186)
chr8 (338-403)||(5887260-5887325)
[»] chr5 (1 HSPs)
chr5 (348-398)||(2590846-2590896)
[»] scaffold0251 (1 HSPs)
scaffold0251 (347-395)||(9869-9917)
[»] scaffold0008 (1 HSPs)
scaffold0008 (348-395)||(262048-262095)
[»] chr3 (2 HSPs)
chr3 (337-404)||(34626699-34626766)
chr3 (351-398)||(44674042-44674089)
[»] chr4 (1 HSPs)
chr4 (351-400)||(43560551-43560600)
[»] chr2 (2 HSPs)
chr2 (343-403)||(42789002-42789062)
chr2 (351-400)||(28205964-28206013)


Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 45676466 - 45676079
Alignment:
Q  18 cctccagaatatttccacgatggttctgacacaaagagtttnnnnnnnn-catttgaaagaggttaattgaagaaagtgcacatgggaagacattcttgt 116  Q
    ||||||||||||||||||| |||||||||||||||||||||         ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45676466 cctccagaatatttccacgttggttctgacacaaagagtttaaaaaaaaacatttgatagaggttaattgaagaaagtgcacatgggaagacattcttgt 45676367  T
Q  117 tgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtcatggatgttggagctcag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676366 tgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtcatggatgttggagctcag 45676267  T
Q  217 ttccaaaattagctggtacaaattacttacataccaataattatatcatgttaattaatgtcatcatattatattgttacacataatgagtgcacaatta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676266 ttccaaaattagctggtacaaattacttacataccaataattatatcatgttaattaatgtcatcatattatattgttacacataatgagtgcacaatta 45676167  T
Q  317 attaaaattatcatatatgtcaggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676166 attaaaattatcatatatgtcaggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaag 45676079  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 45437737 - 45437858
Alignment:
Q  99 atgggaagacattcttgttgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtc 198  Q
    ||||||||||| |||||||||||||||||||||||| | |||||||| ||||| || || || |||||||| ||||||||| |||| || ||| ||||||    
T  45437737 atgggaagacactcttgttgctacaagcagaagcttaggaaaggtctatggtcacctgaggaggatgaaaaacttttgaatcatattactaaatatggtc 45437836  T
Q  199 atggatgttggagctcagttcc 220  Q
    ||||||||||||| ||||||||    
T  45437837 atggatgttggagttcagttcc 45437858  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 37962620 - 37962762
Alignment:
Q  96 cacatgggaagacattcttgttgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatg 195  Q
    |||||||||||||| ||||| ||||||||||||||  |  | ||||| |||||||| || || |||||||| |||||||||||||| || ||||||||||    
T  37962620 cacatgggaagacactcttgctgctacaagcagaaattaaggaaaggactttggtctcctgaggaagatgagaagcttttgaattacattaccaaacatg 37962719  T
Q  196 gtcatggatgttggagctcagttccaaaattagctggtacaaa 238  Q
    |||||||||||||||| ||||| || ||| |||| ||||||||    
T  37962720 gtcatggatgttggagttcagtccccaaactagcaggtacaaa 37962762  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 38269858 - 38269740
Alignment:
Q  99 atgggaagacattcttgttgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtc 198  Q
    |||||||| || || ||||| ||||||||||||||| | |||||||| ||||| ||||||||||||||||| ||  |||   |||| || ||  ||||||    
T  38269858 atgggaaggcactcatgttgttacaagcagaagcttaggaaaggtctatggtcaccagaagaagatgaaaaactactgaggcatataacaaagtatggtc 38269759  T
Q  199 atggatgttggagctcagt 217  Q
    ||||||||||||| |||||    
T  38269758 atggatgttggagttcagt 38269740  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 51044460 - 51044527
Alignment:
Q  337 caggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaag 404  Q
    |||| ||||| |||||||| ||||| |||||||||||||||||||| ||| | |||||||||||||||    
T  51044460 cagggttgcaaaggtgtggaaagagctgtagattgagatggataaactatttgaggcctgatttgaag 51044527  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 403
Target Start/End: Original strand, 37962857 - 37962923
Alignment:
Q  337 caggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 403  Q
    |||||||||| ||||||||||||||||| || || ||||||||||||||  | ||||||||||||||    
T  37962857 caggtttgcaaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaa 37962923  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 51044130 - 51044226
Alignment:
Q  138 aaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtcatggatgttggagctcagttccaaaattagctggta 234  Q
    |||||| | |||||||| ||||||||||| |||||||| ||||| || ||||    ||||  |||||||||||| |||||||| ||| |||||||||    
T  51044130 aaaggtttatggtcccctgaagaagatgataagcttttcaattacataaccatgtttggtgttggatgttggagttcagttcctaaactagctggta 51044226  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 16127458 - 16127418
Alignment:
Q  351 tgtgggaagagttgtagattgagatggataaattatctaag 391  Q
    ||||| ||||||||||||||||||||||| |||||| ||||    
T  16127458 tgtggaaagagttgtagattgagatggattaattatttaag 16127418  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 5849928 - 5849863
Alignment:
Q  338 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 403  Q
    |||| ||||||| ||||| || ||||||||||| |||||||||||||||||||| |||||||||||    
T  5849928 aggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttgaa 5849863  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 5921297 - 5921232
Alignment:
Q  338 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 403  Q
    |||| ||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  5921297 aggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 5921232  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 5949189 - 5949124
Alignment:
Q  338 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 403  Q
    |||| ||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  5949189 aggtctgcagagatgtggaaagagttgaagattaagatggataaattatctaagacctgatttgaa 5949124  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 5960446 - 5960389
Alignment:
Q  346 agaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 403  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  5960446 agagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaa 5960389  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 5984717 - 5984652
Alignment:
Q  338 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 403  Q
    |||| ||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  5984717 aggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 5984652  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 400
Target Start/End: Complemental strand, 5843186 - 5843124
Alignment:
Q  338 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgattt 400  Q
    |||| ||||||| ||||| || ||||||||||| |||||||||||||||||||| ||||||||    
T  5843186 aggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgattt 5843124  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 5887325 - 5887260
Alignment:
Q  338 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 403  Q
    |||| ||||||| || || |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  5887325 aggtctgcagagatgcggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 5887260  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 2590846 - 2590896
Alignment:
Q  348 aggtgtgggaagagttgtagattgagatggataaattatctaaggcctgat 398  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||||||||    
T  2590846 aggtgtggtaagagttgtaggttgagatggataaattatttaaggcctgat 2590896  T

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Target: scaffold0251 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 9869 - 9917
Alignment:
Q  347 gaggtgtgggaagagttgtagattgagatggataaattatctaaggcct 395  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  9869 gaggtgtgggaagagttgtagattgaggtggttgaattatctaaggcct 9917  T

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Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 395
Target Start/End: Complemental strand, 262095 - 262048
Alignment:
Q  348 aggtgtgggaagagttgtagattgagatggataaattatctaaggcct 395  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||||    
T  262095 aggtgtgggaagagttgtagattgaggtggctgaattatctaaggcct 262048  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 34626766 - 34626699
Alignment:
Q  337 caggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaag 404  Q
    |||| ||||| || ||||| ||||||||||||||||||||||| || ||||| || ||||||||||||    
T  34626766 cagggttgcaaagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaag 34626699  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 44674042 - 44674089
Alignment:
Q  351 tgtgggaagagttgtagattgagatggataaattatctaaggcctgat 398  Q
    ||||| |||||||| |||||||||||||||||||| ||||| ||||||    
T  44674042 tgtggcaagagttgcagattgagatggataaattacctaagacctgat 44674089  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 43560600 - 43560551
Alignment:
Q  351 tgtgggaagagttgtagattgagatggataaattatctaaggcctgattt 400  Q
    ||||| |||||||||||||||||||||||||| ||| | |||||||||||    
T  43560600 tgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 43560551  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 42789062 - 42789002
Alignment:
Q  343 tgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 403  Q
    ||||||| ||||| || ||||| || |||||||||||||||||| |||| |||||||||||    
T  42789062 tgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaa 42789002  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 400
Target Start/End: Original strand, 28205964 - 28206013
Alignment:
Q  351 tgtgggaagagttgtagattgagatggataaattatctaaggcctgattt 400  Q
    |||||||| |||||| | ||||||||||| |||||||| |||||||||||    
T  28205964 tgtgggaaaagttgtcgtttgagatggatcaattatcttaggcctgattt 28206013  T

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