View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15485_low_12 (Length: 412)
Name: NF15485_low_12
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15485_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Original strand, 23335105 - 23335494
Alignment:
| Q |
17 |
cacagctagtataggaacaataggcatacctaaaacacttatagcattagagaatagtgaagaaacctcaaaaattagtccaacgcaaccaatactaaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23335105 |
cacagctagtataggaacaataggcatacctaaaacacttatagcattagagaatagtgaagaaacctcaaaaattagtccaacgcaaccaatactaaag |
23335204 |
T |
|
| Q |
117 |
acttgccaagttatggctataaaagtgagatcaaggacataagaagctttccccaactcataatcttccatttcattctttataccattccactctccac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23335205 |
acttgccaagttatggctataaaagtgagatcaaggacataagaagctttccccaactcataatcttccatttcattctttataccattccactctccac |
23335304 |
T |
|
| Q |
217 |
ttgcaaaaagtcctactagagtaatacaagtagctaccatttgttgatatattatcatgtccatcacacttttaaaattttgccttttcacaaccttctt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23335305 |
ttgcaaaaagtcctactagagtaatacaagtagctaccatttgttgatatattatcatgtccatcacacttttaaaattttgccttttcacaaccttctt |
23335404 |
T |
|
| Q |
317 |
gaaagctagttgtgtaagggaaaggatcaacccataccctgcagatgcaactaaagtgcatatgaatccaatggaatacatattcttgga |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23335405 |
gaaagctagttgtgtaagggaaaggatcaacccataccctgcagatgcaactaaagtgcatatgaatccaatggaatacattttcttgga |
23335494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 26 - 353
Target Start/End: Complemental strand, 30825706 - 30825379
Alignment:
| Q |
26 |
tataggaacaataggcatacctaaaacacttatagcattagagaatagtgaagaaacctcaaaaattagtccaacgcaaccaatactaaagacttgccaa |
125 |
Q |
| |
|
|||| |||| ||| ||||||||| || ||||||||||||||| ||||| |||||||||||||||| ||||||||| | ||||||| | |||| ||||||| |
|
|
| T |
30825706 |
tatatgaactataagcatacctagaaaacttatagcattagaaaatagggaagaaacctcaaaaagtagtccaacaccaccaatattgaagatttgccaa |
30825607 |
T |
|
| Q |
126 |
gttatggctataaaagtgagatcaaggacataagaagctttccccaactcataatcttccatttcattctttataccattccactctccacttgcaaaaa |
225 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||||||||||| ||||| || |||||||| | || ||| | |||||||||||||||||||||| |
|
|
| T |
30825606 |
gttatggctatgaaagtgagaacaagcacataagaagctttccccatttcatactcctccatttccattttgatatccttccactctccacttgcaaaaa |
30825507 |
T |
|
| Q |
226 |
gtcctactagagtaatacaagtagctaccatttgttgatatattatcatgtccatcacacttttaaaattttgccttttcacaaccttcttgaaagctag |
325 |
Q |
| |
|
|||| | |||||| | |||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30825506 |
gtccaattagagtcacacaagtagctaccagttgttgatatattatcatatccatgacacttctaaaattttcccttttcacaaccttcttgaaagctag |
30825407 |
T |
|
| Q |
326 |
ttgtgtaagggaaaggatcaacccatac |
353 |
Q |
| |
|
||||||||||||||| | ||| |||||| |
|
|
| T |
30825406 |
ttgtgtaagggaaagcaccaatccatac |
30825379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University