View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15485_low_14 (Length: 379)
Name: NF15485_low_14
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15485_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 207 - 373
Target Start/End: Original strand, 39848630 - 39848796
Alignment:
| Q |
207 |
aacagatgggtgcaataatcatcacataattcataagttataatataaattacaaaacaaatgcataaaaaccacaagattcgtgtgacgtatgttgttc |
306 |
Q |
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| T |
39848630 |
aacagatgggtgcaataatcatcacataattcataagttataatataaattacaaaacaaatgcataaaaaccacaagattcgtgtgacgtatgttgttc |
39848729 |
T |
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| Q |
307 |
ttcttccaactaaagcattgtgatttttatattttagtattgtatttaaaataattgtttcctatga |
373 |
Q |
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| T |
39848730 |
ttcttccaactaaagcattgtgatttttatattttagtattgtatttaaaataattgtttcctatga |
39848796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 39848424 - 39848589
Alignment:
| Q |
1 |
attgaaaagcttcaagcaattttgtgaatttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcc |
100 |
Q |
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| T |
39848424 |
attgaaaagtttcaagcaattttgtgaatttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcc |
39848523 |
T |
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| Q |
101 |
cataaccaaaagcgcgggaattgagctggtatgccaaactctttagcaacattttcctacatatca |
166 |
Q |
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| T |
39848524 |
cataaccaaaagcgctggaattgagctggtatgccaaactctttagcaacattttcctacatatca |
39848589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 226 - 371
Target Start/End: Original strand, 39858344 - 39858490
Alignment:
| Q |
226 |
catcacataattcataagttataatataaattacaaaac-aaatgcataaaaaccacaagattcgtgtgacgtatgttgttcttcttccaactaaagcat |
324 |
Q |
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| T |
39858344 |
catcacaaaattcttaagttataatataaattacaaaaccaaaagcataaaaaccacaagattcatatgacgtatgtttttcttcttcctactaaagcat |
39858443 |
T |
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| Q |
325 |
tgtgatttttatattttagtattgtatttaaaataattgtttcctat |
371 |
Q |
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| T |
39858444 |
tgtgatttttatatttcagaactgtatttaaaataattgtttcctat |
39858490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 39899071 - 39899185
Alignment:
| Q |
25 |
tgaatttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattga |
124 |
Q |
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| T |
39899071 |
tgaatttacaggtcctgcttcctcaatgtttgtcaaaggccgagaaggtcgacatgtatggttttgacgcttttcccataaccaaaagcgctggaattga |
39899170 |
T |
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| Q |
125 |
gctggtatgccaaac |
139 |
Q |
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| T |
39899171 |
gctggtatgccaaac |
39899185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 39858178 - 39858327
Alignment:
| Q |
1 |
attgaaaagcttcaagcaattttgtgaatttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcc |
100 |
Q |
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|||||||| ||||||||||| | |||| ||||||||| |||||| ||||||| ||||||| ||||| |||||||| ||||| |||| ||||||||| | |
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| T |
39858178 |
attgaaaaacttcaagcaatctcatgaacttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttc |
39858277 |
T |
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| Q |
101 |
cataaccaaaagcgcgggaattgagctggtatgccaaactctttagcaac |
150 |
Q |
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|| | |||||||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
39858278 |
caaatccaaaagcgctggaattgagctagtatgccaaactctctagcaac |
39858327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 39865501 - 39865666
Alignment:
| Q |
1 |
attgaaaagcttcaagcaattttgtgaatttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcc |
100 |
Q |
| |
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||||| |||||||||| || || ||||||||||| | |||||| || ||| ||||||| | ||| |||| |||||||||| ||||||||||||| | |
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| T |
39865501 |
attgataagcttcaagagatcttatgaatttacaggtcctgcttcctcaatgcgtgtcaacggacgaaatggacgacatgtatcgttttcacgctttgca |
39865600 |
T |
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| Q |
101 |
cataaccaaaagcgcgggaattgagctggtatgccaaactctttagcaacattttcctacatatca |
166 |
Q |
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||| |||||||||| |||||||||||||||||| ||||||||||||||| | ||||||||||||| |
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| T |
39865601 |
aatacccaaaagcgctggaattgagctggtatgcaaaactctttagcaacctcttcctacatatca |
39865666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 37466958 - 37467094
Alignment:
| Q |
30 |
ttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattgagctgg |
129 |
Q |
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|||||||||||||||| || || |||||||| | ||| || ||| |||||||||||| ||||||| |||||| |||||||||| |||||||| | || |
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| T |
37466958 |
ttacagattgtgcttcctcaatttgtgtcaatggacgattaggacgatatgtatggttttgacgctttgcccatagccaaaagcgctggaattgaacagg |
37467057 |
T |
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| Q |
130 |
tatgccaaactctttagcaacattttcctacatatca |
166 |
Q |
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|||||| |||||||||||||| | ||||||||||||| |
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| T |
37467058 |
tatgccgaactctttagcaacctcttcctacatatca |
37467094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 39912107 - 39912246
Alignment:
| Q |
27 |
aatttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattgagc |
126 |
Q |
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| T |
39912107 |
aatttacaggtgctgcttcctcaatgtatgtcaatggccgaaatggacgatatgtatggtttagacgctttgcccatagccaaaagcgctggaatcgagc |
39912206 |
T |
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| Q |
127 |
tggtatgccaaactctttagcaacattttcctacatatca |
166 |
Q |
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| T |
39912207 |
cggtatgccgaactctttggcaacctcttcctacatatca |
39912246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 38968028 - 38967961
Alignment:
| Q |
96 |
tttcccataaccaaaagcgcgggaattgagctggtatgccaaactctttagcaacattttcctacata |
163 |
Q |
| |
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||||||||| | |||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
38968028 |
tttcccatagctaaaagcgctggaattgagctggtatgccaaactctttagcaacctcttcctacata |
38967961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 39865811 - 39865872
Alignment:
| Q |
309 |
cttccaactaaagcattgtgatttttatattttagtattgtatttaaaataattgtttcctat |
371 |
Q |
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| T |
39865811 |
cttccaactaaagcatcatgatttt-atatttaagtattgattttaaaataattgttttctat |
39865872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 36058420 - 36058350
Alignment:
| Q |
80 |
gtatggttttcacgcttttcccataaccaaaagcgcgggaattgagctggtatgccaaactctttagcaac |
150 |
Q |
| |
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| T |
36058420 |
gtatggttttgacgcttagcccacagccaaaagcgctgaaattgaactggtataccaaactcttttgcaac |
36058350 |
T |
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