View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15485_low_18 (Length: 332)
Name: NF15485_low_18
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15485_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 40743994 - 40743870
Alignment:
| Q |
19 |
aaaggttaaggaaatatctattcatcatcaagtcaattcatttgatgtcttagtttgaatgagtgaaatgaattgtccaac----aatatgtcattttta |
114 |
Q |
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| T |
40743994 |
aaaggttaaggaaatatgtatgaatcatcaagtcaattcatttgatgtcttagtttgaatgagtgaaatgaattgtccaaccatgaatatgtccttttta |
40743895 |
T |
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| Q |
115 |
ggagttttcatatatttgttataaa |
139 |
Q |
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| T |
40743894 |
ggagttttcatctatttgttataaa |
40743870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 40756413 - 40756295
Alignment:
| Q |
114 |
aggagttttcatatatttgttataaaaaaatttacnnnnnnnnnn-ataagaatcagaaagnnnnnnnnnnttaaaattgtatcaaataagaagttgtgt |
212 |
Q |
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| T |
40756413 |
aggagttttcatatatttgttataaaaaaatttactttttttttttataagaatcagaaagaaaaaaaaaattaaaattgtatcaaataagaagttgtgt |
40756314 |
T |
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| Q |
213 |
tgagtggcttctcttgaag |
231 |
Q |
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| T |
40756313 |
tgagtagcttctcttgaag |
40756295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 40743726 - 40743675
Alignment:
| Q |
279 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagaataatctaccca |
330 |
Q |
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| T |
40743726 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttaccca |
40743675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 40756242 - 40756191
Alignment:
| Q |
279 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagaataatctaccca |
330 |
Q |
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| T |
40756242 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttaccca |
40756191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 40743816 - 40743778
Alignment:
| Q |
193 |
tatcaaataagaagttgtgttgagtggcttctcttgaag |
231 |
Q |
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| T |
40743816 |
tatcaaataagaagttgttttgagtagcttctcttgaag |
40743778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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