View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15485_low_19 (Length: 288)

Name: NF15485_low_19
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15485_low_19
NF15485_low_19
[»] chr6 (32 HSPs)
chr6 (1-273)||(4616852-4617124)
chr6 (169-273)||(4480691-4480795)
chr6 (169-273)||(4601787-4601891)
chr6 (177-273)||(4504427-4504523)
chr6 (169-270)||(4505855-4505956)
chr6 (169-273)||(4516319-4516423)
chr6 (169-275)||(3171739-3171845)
chr6 (174-268)||(4267201-4267295)
chr6 (169-272)||(4492953-4493056)
chr6 (171-266)||(4592231-4592326)
chr6 (169-255)||(4299788-4299874)
chr6 (171-273)||(4560506-4560608)
chr6 (171-269)||(4570972-4571070)
chr6 (169-273)||(4625949-4626053)
chr6 (171-266)||(4613755-4613850)
chr6 (169-269)||(4515155-4515255)
chr6 (171-262)||(4557125-4557216)
chr6 (171-266)||(4585636-4585731)
chr6 (174-273)||(4622145-4622244)
chr6 (168-266)||(4392063-4392161)
chr6 (177-267)||(4490391-4490481)
chr6 (171-266)||(4563711-4563806)
chr6 (171-266)||(4579432-4579527)
chr6 (192-270)||(4260187-4260265)
chr6 (171-272)||(4574308-4574409)
chr6 (174-270)||(4256645-4256741)
chr6 (190-261)||(4568072-4568143)
chr6 (169-270)||(4461121-4461222)
chr6 (171-236)||(4606958-4607023)
chr6 (177-270)||(4469809-4469902)
chr6 (175-263)||(4598175-4598263)
chr6 (78-150)||(4601643-4601715)
[»] chr8 (3 HSPs)
chr8 (169-273)||(1674224-1674328)
chr8 (171-266)||(20863880-20863975)
chr8 (171-236)||(16686334-16686399)
[»] chr5 (2 HSPs)
chr5 (169-273)||(28000129-28000233)
chr5 (174-268)||(24103002-24103096)
[»] scaffold0288 (1 HSPs)
scaffold0288 (174-273)||(3749-3848)
[»] chr3 (1 HSPs)
chr3 (169-273)||(1281112-1281216)
[»] scaffold0477 (1 HSPs)
scaffold0477 (174-273)||(4716-4815)
[»] chr7 (1 HSPs)
chr7 (168-266)||(3086417-3086515)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 4616852 - 4617124
Alignment:
Q  1 taaactctgaatatgaacttagaaatttattactttgattgacgatttggtacacttaccaataatccaccaataaacccaaattaaatattgaaacaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4616852 taaactctgaatatgaacttagaaatttattactttgattgacgatttggtacacttaccaataatccaccaataaacccaaattaaatattgaaacaat 4616951  T
Q  101 acatagttaaaaatacagtacatcaaagcatagtaatagcctaaaaattttgatacgacctcgtgccttaattttgtttaagcaacacttccttaataac 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |||||||||||||||||||||| |||||||||||    
T  4616952 acatagttaaaaatacagtacatcaaagcatagtaatggcctaaaaatttcgatacgacctcctggcttaattttgtttaagcaacacatccttaataac 4617051  T
Q  201 tttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggcc 273  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4617052 tttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggcc 4617124  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 4480691 - 4480795
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||||||    
T  4480691 taattttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactcca 4480790  T
Q  269 tggcc 273  Q
    |||||    
T  4480791 tggcc 4480795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 4601787 - 4601891
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||| |||| |||||||||||||||    
T  4601787 taattttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactcca 4601886  T
Q  269 tggcc 273  Q
    |||||    
T  4601887 tggcc 4601891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 4504523 - 4504427
Alignment:
Q  177 tttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggcc 273  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggcc 4504427  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 4505855 - 4505956
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| || | ||||| |||| |||| ||||||||||    
T  4505855 taattttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactcca 4505954  T
Q  269 tg 270  Q
    ||    
T  4505955 tg 4505956  T

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Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 4516319 - 4516423
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    ||||||||||| |||| ||| |||||||| ||||| ||||||||||  |||||||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  4516319 taattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattcca 4516418  T
Q  269 tggcc 273  Q
    |||||    
T  4516419 tggcc 4516423  T

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Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 275
Target Start/End: Original strand, 3171739 - 3171845
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    |||| |||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||   ||| || | ||||||||||||||||||||||||||    
T  3171739 taatattgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactcca 3171838  T
Q  269 tggccct 275  Q
    |||||||    
T  3171839 tggccct 3171845  T

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Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 4267295 - 4267201
Alignment:
Q  174 ttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    |||||||||||  || ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||| ||||||||||||    
T  4267295 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactcca 4267201  T

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Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 4492953 - 4493056
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    ||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||| |||   |||| ||||||||||||||| |||||||||     
T  4492953 taattttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactccg 4493052  T
Q  269 tggc 272  Q
    ||||    
T  4493053 tggc 4493056  T

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Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 4592231 - 4592326
Alignment:
Q  171 attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactc 266  Q
    ||||| |||||||||||| ||||| || | ||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  4592231 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactc 4592326  T

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Target: chr6; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 4299874 - 4299788
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttc 255  Q
    |||| |||||||||||  || ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  4299874 taatattgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttctcctctgccttc 4299788  T

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Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 273
Target Start/End: Original strand, 4560506 - 4560608
Alignment:
Q  171 attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg 270  Q
    |||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| || ||||| |||| | |||| ||||| ||||||| |||||||    
T  4560506 attttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctccatg 4560605  T
Q  271 gcc 273  Q
    |||    
T  4560606 gcc 4560608  T

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Target: chr6; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 4570972 - 4571070
Alignment:
Q  171 attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccat 269  Q
    ||||| ||||||||| || |||||||| ||||| |||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||| ||||||    
T  4570972 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctccat 4571070  T

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Target: chr6; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 4625949 - 4626053
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    |||| |||||||||||| || || ||||| | ||| ||||  |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||    
T  4625949 taatattgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactcca 4626048  T
Q  269 tggcc 273  Q
    |||||    
T  4626049 tggcc 4626053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 4613850 - 4613755
Alignment:
Q  171 attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactc 266  Q
    ||||||||| |||| ||| || || || ||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||    
T  4613850 attttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaactc 4613755  T

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Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 269
Target Start/End: Complemental strand, 4515255 - 4515155
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    |||||||||||||||||||| ||||| || |||||||||||||||| ||||||| | || ||  ||||||||| ||| ||||||||||| ||||||||||    
T  4515255 taattttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactcca 4515156  T
Q  269 t 269  Q
    |    
T  4515155 t 4515155  T

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Target: chr6; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 4557125 - 4557216
Alignment:
Q  171 attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttca 262  Q
    ||||||||||||||| || |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||| |||||| |||||| ||||||    
T  4557125 attttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 4557216  T

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Target: chr6; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 4585636 - 4585731
Alignment:
Q  171 attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactc 266  Q
    ||||| ||||||||| || |||||||| ||||| |||||||| |||||||||||||| || ||||| |||| |||||| |||||||||||||||||    
T  4585636 attttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaactc 4585731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 174 - 273
Target Start/End: Original strand, 4622145 - 4622244
Alignment:
Q  174 ttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggcc 273  Q
    |||||||||||  || |||||||||||||||||||||||  |||||||||||||||| || || ||  |||| |||||||||| ||||||||||||||||    
T  4622145 ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc 4622244  T

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Target: chr6; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 4392161 - 4392063
Alignment:
Q  168 ttaattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactc 266  Q
    |||||| ||||||||||| || |||||||| | |||||||||||||||| ||||| ||||||| ||||  |||| ||||| ||||||||||||||||||    
T  4392161 ttaattatgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactc 4392063  T

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Target: chr6; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 4490481 - 4490391
Alignment:
Q  177 tttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcc 267  Q
    ||||||||  || |||||||| ||||||||||||||||||||||||| ||||||  |||| |||| |||| ||||||||||||||||||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactcc 4490391  T

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Target: chr6; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 4563711 - 4563806
Alignment:
Q  171 attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactc 266  Q
    ||||||||||||||| || ||||| || ||||||||||||||||||||||||||||| || | ||| ||||| |||||  | ||||||||||||||    
T  4563711 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactc 4563806  T

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Target: chr6; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 4579432 - 4579527
Alignment:
Q  171 attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactc 266  Q
    ||||||||| || ||||| |||||||| ||||| |||||||||||||||||||| || || ||||| |||| ||||||  ||||||||||||||||    
T  4579432 attttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 4579527  T

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Target: chr6; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 4260265 - 4260187
Alignment:
Q  192 cttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg 270  Q
    ||||||||||||||||||||||||  ||||| |||||  ||| || |||||||||||||||||| ||||||||||||||    
T  4260265 cttaataactttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttcctcttcaactccatg 4260187  T

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Target: chr6; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 4574308 - 4574409
Alignment:
Q  171 attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg 270  Q
    |||||||||||||||||| |||||||| ||||| ||||||||  ||||||||||||| || ||||| |||| | ||||  |||||||||||| ||| |||    
T  4574308 attttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctcaatg 4574407  T
Q  271 gc 272  Q
    ||    
T  4574408 gc 4574409  T

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Target: chr6; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 4256741 - 4256645
Alignment:
Q  174 ttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg 270  Q
    |||||||||||  || ||||||||||||||||||||||||||  |||||  |||| |||| || ||||||| ||||| |||||||||||| ||||||    
T  4256741 ttgtttaagcatgacctccttaataactttgtccaagttcatcaatgaatgaccagctgggctggtgttcttctctgtcttcttcttcaattccatg 4256645  T

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Target: chr6; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 4568072 - 4568143
Alignment:
Q  190 tccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttc 261  Q
    |||||||| |||||||||||||||||||||||| || |||| ||||| |||| || ||||||||||||||||    
T  4568072 tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttc 4568143  T

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Target: chr6; HSP #28
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 4461121 - 4461222
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    ||||||||||||||||| || |||||||| ||||||||||||||| ||||||||  ||| || ||||| || | ||||||  |||||||||| || ||||    
T  4461121 taattttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattcca 4461220  T
Q  269 tg 270  Q
    ||    
T  4461221 tg 4461222  T

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Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 4607023 - 4606958
Alignment:
Q  171 attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtct 236  Q
    ||||||||||||||| || | |||||| ||||| |||||||||||||||||| |||||||||||||    
T  4607023 attttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtct 4606958  T

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Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 4469809 - 4469902
Alignment:
Q  177 tttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg 270  Q
    ||||||||| || |||||||| ||||||||||||||| ||||||||  ||| || ||||| || | ||||||  |||||||||| |||||||||    
T  4469809 tttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatg 4469902  T

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Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 4598175 - 4598263
Alignment:
Q  175 tgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaa 263  Q
    |||||||| ||||| |||||||| ||||| || |||||||||||||||||||| ||  |||| || | |||||| |||||| |||||||    
T  4598175 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaa 4598263  T

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Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 4601643 - 4601715
Alignment:
Q  78 cccaaattaaatattgaaacaatacatagttaaaaatacagtacatcaaagcatagtaatagcctaaaaattt 150  Q
    |||||||| ||||||| || | |||||||| ||||||||| | |||||||||||||||||||| ||| |||||    
T  4601643 cccaaattcaatattggaatagtacatagtaaaaaatacattgcatcaaagcatagtaatagcttaataattt 4601715  T

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Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 1674224 - 1674328
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1674224 taattttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattcca 1674323  T
Q  269 tggcc 273  Q
    |||||    
T  1674324 tggcc 1674328  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 20863975 - 20863880
Alignment:
Q  171 attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactc 266  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||  | ||||| |||| ||||||||||||||||||||||||    
T  20863975 attttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttcttcaactc 20863880  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 16686399 - 16686334
Alignment:
Q  171 attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtct 236  Q
    ||||||||||||||| || ||| |||| ||||| |||||||||||||||||||||||||| |||||    
T  16686399 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtct 16686334  T

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Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 28000233 - 28000129
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28000233 taattttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactcca 28000134  T
Q  269 tggcc 273  Q
    |||||    
T  28000133 tggcc 28000129  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 24103002 - 24103096
Alignment:
Q  174 ttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    |||||||||||  || ||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||| |||||||||||||| |||||||    
T  24103002 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactcca 24103096  T

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Target: scaffold0288 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 174 - 273
Target Start/End: Complemental strand, 3848 - 3749
Alignment:
Q  174 ttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggcc 273  Q
    |||||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  3848 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggcc 3749  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 1281112 - 1281216
Alignment:
Q  169 taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactcca 268  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||  ||||||||| ||||    
T  1281112 taattttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattcca 1281211  T
Q  269 tggcc 273  Q
    |||||    
T  1281212 tggcc 1281216  T

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Target: scaffold0477 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 174 - 273
Target Start/End: Complemental strand, 4815 - 4716
Alignment:
Q  174 ttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggcc 273  Q
    |||||||||||  || |||||||| |||||||||||||||||||||||||| ||||| |  || ||||||||||||||||||||||||||||||||||||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggcc 4716  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 3086417 - 3086515
Alignment:
Q  168 ttaattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactc 266  Q
    ||||| || ||||||||| || |||||||||||||||||||||||||||||||||||||||||    || |||||||| ||||| |||||||| |||||    
T  3086417 ttaatattttttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactc 3086515  T

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