View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15485_low_21 (Length: 258)
Name: NF15485_low_21
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15485_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 33008714 - 33008839
Alignment:
| Q |
5 |
gattaatgtttgaatctttaatatgtctgaaagtaatgatgtggaattgagaagacatgatttgtttcctaccatgtagtatatgaattttttctttgtg |
104 |
Q |
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| T |
33008714 |
gattaatgtttgaatctttaatatgtctgaaagtaatgatgtggaattgagaagacatgatttgtttcctaccatgtagtatatgaattttctctttgta |
33008813 |
T |
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| Q |
105 |
gttgtctaagtggccggtgatatgca |
130 |
Q |
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| T |
33008814 |
gttgcttaagtggccggtgatatgca |
33008839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 139 - 256
Target Start/End: Original strand, 33008801 - 33008917
Alignment:
| Q |
139 |
ttttttctttgtagttgcttaagtagccggtgatatgcatttgaacatcattttcatgacatagcatatgcannnnnnnngtagtgcctaagtggccggc |
238 |
Q |
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| T |
33008801 |
ttttctctttgtagttgcttaagtggccggtgatatgcatttgaacatcattttcatgatatagcatatgca-tttttttgtagtgcctaagtggccggt |
33008899 |
T |
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| Q |
239 |
gatctttacttctctgtg |
256 |
Q |
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| T |
33008900 |
gatctttacttctttgtg |
33008917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 12948500 - 12948367
Alignment:
| Q |
77 |
catgtagtatatgaattttttctttgtggttgtctaagtggccggtgatatgcaattaatccttttttctttgtagttgcttaagtagccggtgatatgc |
176 |
Q |
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| T |
12948500 |
catgtggtatatggattgtttaattctggttttataagtggctggtgatatgcaactaatctttttctgtttgtggttgcttaagtggccgatggtatgc |
12948401 |
T |
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| Q |
177 |
atttgaacatcattttcatgacatagcatatgca |
210 |
Q |
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| T |
12948400 |
atttgaacatcatattccttttatagcatatgca |
12948367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 23210799 - 23210907
Alignment:
| Q |
147 |
ttgtagttgcttaagtagccggtgatatgcatttgaacatcattttcatgacatagcatatgcannnnnnnngtagtgcctaagtggccggcgatcttta |
246 |
Q |
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| T |
23210799 |
ttgtggttgcctacgtagccggtgatatgcatttggacatcattttcatggcataacatatgca-tttctgtgtggtgcctaagtggccagtgatcttta |
23210897 |
T |
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| Q |
247 |
cttctctgtg |
256 |
Q |
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| T |
23210898 |
cttctttgtg |
23210907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 23210776 - 23210829
Alignment:
| Q |
77 |
catgtagtatatgaattttttctttgtggttgtctaagtggccggtgatatgca |
130 |
Q |
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| T |
23210776 |
catgtggtatatgaattttctcgttgtggttgcctacgtagccggtgatatgca |
23210829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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