View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15485_low_23 (Length: 247)

Name: NF15485_low_23
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15485_low_23
NF15485_low_23
[»] chr7 (6 HSPs)
chr7 (13-237)||(21769188-21769417)
chr7 (15-238)||(18395161-18395375)
chr7 (55-243)||(8731349-8731530)
chr7 (55-243)||(28610414-28610595)
chr7 (177-237)||(2582218-2582278)
chr7 (181-228)||(10295474-10295521)
[»] chr2 (6 HSPs)
chr2 (110-243)||(39816224-39816357)
chr2 (55-128)||(42275729-42275804)
chr2 (73-228)||(35007092-35007247)
chr2 (55-118)||(42277955-42278020)
chr2 (1-39)||(39816191-39816229)
chr2 (114-243)||(42278032-42278152)
[»] chr4 (2 HSPs)
chr4 (55-243)||(13776278-13776459)
chr4 (55-243)||(13773980-13774161)
[»] chr1 (5 HSPs)
chr1 (55-243)||(10908937-10909118)
chr1 (55-243)||(10911181-10911362)
chr1 (73-195)||(4820952-4821074)
chr1 (73-195)||(4832752-4832874)
chr1 (55-97)||(13011664-13011708)
[»] chr3 (2 HSPs)
chr3 (55-243)||(4530664-4530845)
chr3 (73-243)||(4532963-4533124)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 21769188 - 21769417
Alignment:
Q  13 gatgagcctcatttatactactctagtaaggctc---atacaaagatctagaaacatttaatga--ctacttaattacaagaactatctagagatgctaa 107  Q
    ||||||||| |||||||||||||||||||||||    ||| |||| |||||||||||||| |||  ||||||||||||||||||||||||||||| ||||    
T  21769188 gatgagccttatttatactactctagtaaggcttcagatagaaaggtctagaaacatttagtgatactacttaattacaagaactatctagagatactaa 21769287  T
Q  108 tatctagttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctcc 207  Q
    ||||||||||||||  |||||||||||||  ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21769288 tatctagttcatgtagctagaaagttctaaggatattaagatgctcctagttattatgactttatttagtagtattcttgaaagttctaaaatattctcc 21769387  T
Q  208 acatcttgaaagttccataatgttctatat 237  Q
    ||||||||||||||||||||||||||||||    
T  21769388 acatcttgaaagttccataatgttctatat 21769417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 18395375 - 18395161
Alignment:
Q  15 tgagcctcatttatactactctagtaaggctcatacaaagatctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatct 112  Q
    ||||||| |||||||||||||||| ||||||| ||||   ||||||||||||||||||  ||||||||||||||||||||||| |||||| |||||||||    
T  18395375 tgagccttatttatactactctaggaaggctc-tacatt-atctagaaacatttaatgctactacttaattacaagaactatcaagagattctaatatct 18395278  T
Q  113 agttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatc 212  Q
    ||||||||| |||||||||||||||||||   || ||| ||||| | |  |||||||||||| ||| ||||||||||||||||         || |||||    
T  18395277 agttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgactttattttgtaatattcttgaaagttct---------tcgacatc 18395187  T
Q  213 ttgaaagttccataatgttctatatt 238  Q
    ||||||||||||||||||||||||||    
T  18395186 ttgaaagttccataatgttctatatt 18395161  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 8731349 - 8731530
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  8731349 atctagaaacatttaatgctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 8731448  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  ||||| |||||| ||| ||||||||||||||||         || ||||||| ||||||||||||||||||||||| ||||    
T  8731449 cctaatcactatgacattattttgtaatattcttgaaagttct---------tcgacatcttaaaagttccataatgttctatattattct 8731530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 28610414 - 28610595
Alignment:
Q  55 atctagaaacatttaatga--ctacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    ||||||||||||||||||   ||| ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  28610414 atctagaaacatttaatgctgctaattaattacaagaattatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 28610513  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  |||||||||||| ||| |||| ||||||| |||         || |||||||||||||||||||||||| |||||| ||||    
T  28610514 cctaatcactatgactttattttgtaatatttttgaaagctct---------tcgacatcttgaaagttccataatgttatatattcttct 28610595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 2582278 - 2582218
Alignment:
Q  177 tagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatat 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  2582278 tagtattcttgaaagttctaaaatattctccacatcttgaaagttctataatgttttatat 2582218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 10295521 - 10295474
Alignment:
Q  181 attcttgaaagttctaaaatattctccacatcttgaaagttccataat 228  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  10295521 attcttgaaagttctaaaatattctccacatcttgaaaattctataat 10295474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 110 - 243
Target Start/End: Original strand, 39816224 - 39816357
Alignment:
Q  110 tctagttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccac 209  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39816224 tctagttcatgttcctagaaagttctagagatataaaaatgctcatagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccac 39816323  T
Q  210 atcttgaaagttccataatgttctatatttttct 243  Q
    ||||||||||||||||||||||||||||| ||||    
T  39816324 atcttgaaagttccataatgttctatattattct 39816357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 42275729 - 42275804
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctaga 128  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  42275729 atctagaaacatttaatgctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctaga 42275804  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 228
Target Start/End: Complemental strand, 35007247 - 35007092
Alignment:
Q  73 actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttat 172  Q
    ||||||| ||| |||||| ||||||||||| ||| ||||| ||| ||||  || |||||||||||| || | || ||| || ||||||| ||||||||||    
T  35007247 actactttattgcaagaaatatctagagatactagtatctggttgatgtagctggaaagttctagatatgttaagatgatcttagttattatgactttat 35007148  T
Q  173 ttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataat 228  Q
     |  ||  |||||||||||||||| ||||||||  ||||||||||||||| |||||    
T  35007147 atgttaacattcttgaaagttctataatattctgtacatcttgaaagttctataat 35007092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 42277955 - 42278020
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttca 118  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||||||||||    
T  42277955 atctagaaacatttaatgctactacttaattacaagaactatctagagattttaatatctagttca 42278020  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39816191 - 39816229
Alignment:
Q  1 tatgtcaaaacagatgagcctcatttatactactctagt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  39816191 tatgccaaaacagatgagcctcatttatactactctagt 39816229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 42278032 - 42278152
Alignment:
Q  114 gttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatct 213  Q
    |||||||| |||||||||||||||||||   || ||| ||||| | |  ||||| |||||| ||| ||||||||||||||||         || ||||||    
T  42278032 gttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgacattattttgtaatattcttgaaagttct---------tcgacatct 42278122  T
Q  214 tgaaagttccataatgttctatatttttct 243  Q
    | ||||||||||||||||||||||| ||||    
T  42278123 taaaagttccataatgttctatattattct 42278152  T

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Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 13776459 - 13776278
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  13776459 atctagaaacatttaatgctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 13776360  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  ||||| |||||| ||| ||||||||||||||||         || ||||||||||||||||||||||||||||||| ||||    
T  13776359 cctaatcactatgacattattttgtaatattcttgaaagttct---------tcgacatcttgaaagttccataatgttctatattattct 13776278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 13774161 - 13773980
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  13774161 atctagaaacatttaattctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 13774062  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  ||||| |||||| ||| ||||||||||||||||         || ||||||||||||| ||||||||||||||||| ||||    
T  13774061 cctaatcactatgacattattttgtaatattcttgaaagttct---------tcgacatcttgaaagtcccataatgttctatattattct 13773980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 10909118 - 10908937
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  10909118 atctagaaacatttaatgctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 10909019  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  ||||| |||||| ||| ||||||||||||||||         || ||||||| ||||||||||||||||||||||| ||||    
T  10909018 cctaatcactatgacattattttgtaatattcttgaaagttct---------tcgacatcttaaaagttccataatgttctatattattct 10908937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 10911362 - 10911181
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  10911362 atctagaaacatttaatgctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 10911263  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  ||||| |||||| ||| ||||||||||||||||         || ||||||| ||||||||||||||||||||||| ||||    
T  10911262 cctaatcactatgacattattttgtaatattcttgaaagttct---------tcgacatcttaaaagttccataatgttctatattattct 10911181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 4821074 - 4820952
Alignment:
Q  73 actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttat 172  Q
    ||||||| |||||||||| ||| |||| || ||| ||||||||| ||||  ||| |||||||||||| ||| || |||||||||||||| ||||||||||    
T  4821074 actactttattacaagaaatatttagaaatactagtatctagtttatgtagctaaaaagttctagaggtatcaagatgctcctagttattatgactttat 4820975  T
Q  173 ttagtagtattcttgaaagttct 195  Q
    |||||||||| | |||| |||||    
T  4820974 ttagtagtatacatgaatgttct 4820952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 4832874 - 4832752
Alignment:
Q  73 actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttat 172  Q
    ||||||| |||||||||| ||| |||| || ||| ||||||||| ||||  ||| |||||||||||| ||| || |||||||||||||| ||||||||||    
T  4832874 actactttattacaagaaatatttagaaatactagtatctagtttatgtagctaaaaagttctagaggtatcaagatgctcctagttattatgactttat 4832775  T
Q  173 ttagtagtattcttgaaagttct 195  Q
    |||||||||| | |||| |||||    
T  4832774 ttagtagtatacatgaatgttct 4832752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 13011708 - 13011664
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatcta 97  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  13011708 atctagaaacatttaatgctactacttaattacaagaactatcta 13011664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 4530845 - 4530664
Alignment:
Q  55 atctagaaacatttaatg--actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgct 152  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| |    
T  4530845 atctagaaacatttaattctactacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgat 4530746  T
Q  153 cctagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    |||| | |  | ||| |||||| ||| ||||||||||||||||         || ||||||||||||||||||||||||||||||| ||||    
T  4530745 cctaatcactacgacattattttgtaatattcttgaaagttct---------tcgacatcttgaaagttccataatgttctatattattct 4530664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 243
Target Start/End: Complemental strand, 4533124 - 4532963
Alignment:
Q  73 actacttaattacaagaactatctagagatgctaatatctagttcatgttcctagaaagttctagagatataaaaatgctcctagttatcatgactttat 172  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||   || ||| ||||| | |  ||||| ||||    
T  4533124 actacttaattacaagaactatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgacattat 4533025  T
Q  173 ttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataatgttctatatttttct 243  Q
    || ||| ||||||||||||||||         || ||||||||||||||||||||||||||||||| ||||    
T  4533024 tttgtaatattcttgaaagttct---------tcgacatcttgaaagttccataatgttctatattattct 4532963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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