View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15485_low_24 (Length: 246)
Name: NF15485_low_24
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15485_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 13607915 - 13608138
Alignment:
| Q |
18 |
taaaatgtgaagaaaaagtagcgaaagatgaaaggaacttgaccaaaatatgttagtggaaaattccaaggatgttacatacgaatgtttgtggaagctg |
117 |
Q |
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| T |
13607915 |
taaaatgtgaagaaaaagtagcgaaagatgaaaggaacttgaccaaaatatgttagtggaaaattccaaggatgttacatacgaatgtttgtggaagctg |
13608014 |
T |
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| Q |
118 |
gcaagaaagatcctggaaaagactcaactacgaatactccaacaattatatttaagctgcgttgcaatgtaaagtgagactattcttaacaacttataac |
217 |
Q |
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| T |
13608015 |
gcaagaaagatcctggaaaagactcaactacgaatactccaacaattatatttaagctgcgttgcaatgtaaagtgagactattcttaacaacttataac |
13608114 |
T |
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| Q |
218 |
aattatctaatttttcttctcagt |
241 |
Q |
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|||||||||||||||||| ||||| |
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| T |
13608115 |
aattatctaatttttcttttcagt |
13608138 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 6473662 - 6473569
Alignment:
| Q |
72 |
agtggaaaattccaaggatgttacatacgaatgtttgtgga----agctggcaagaaagatcctggaaaagactcaa--ctacgaatactccaa |
159 |
Q |
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| T |
6473662 |
agtgggaaattccaagggtgttacatacgaatgttggtggaagctagctagcaagaaagaccctggaaaaggctcaaatgtacgaatactccaa |
6473569 |
T |
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