View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15485_low_3 (Length: 552)

Name: NF15485_low_3
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15485_low_3
NF15485_low_3
[»] chr3 (5 HSPs)
chr3 (5-180)||(403739-403914)
chr3 (375-477)||(404272-404376)
chr3 (375-477)||(12040144-12040247)
chr3 (428-477)||(44867280-44867329)
chr3 (474-547)||(12040228-12040301)
[»] chr2 (2 HSPs)
chr2 (375-477)||(41148883-41148984)
chr2 (427-477)||(12836554-12836604)
[»] chr5 (1 HSPs)
chr5 (375-477)||(30053438-30053544)
[»] chr4 (3 HSPs)
chr4 (375-477)||(661641-661744)
chr4 (375-477)||(45031138-45031242)
chr4 (474-513)||(661621-661660)
[»] chr1 (4 HSPs)
chr1 (375-477)||(47794373-47794476)
chr1 (375-477)||(33812200-33812303)
chr1 (375-477)||(33871671-33871774)
chr1 (427-477)||(17961102-17961152)
[»] chr7 (4 HSPs)
chr7 (375-477)||(1066926-1067028)
chr7 (392-477)||(22648732-22648816)
chr7 (474-513)||(1066906-1066945)
chr7 (474-513)||(22648712-22648751)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 9e-90; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 403739 - 403914
Alignment:
Q  5 gattccgctaggcgttggattttgggtggcgactccatcttttacggtgtttgttgggttttggagtgacgagaaatggaatttgttcgcgggagtatga 104  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  403739 gattccgctaggcgttgaattttgggtggcgattccatcttttacggtgtttgttgggttttggagtgacgagaaatggaatttgttcgcgggagtatga 403838  T
Q  105 atgttgtactgggcgggagagagagaaggaatccatatcagtatttttccgggtcccaccgattctagaaattaat 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  403839 atgttgtactgggcgggagagagagaaggaatccatatcagtatttttccgggtcccaccgattctagaaattaat 403914  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 404272 - 404376
Alignment:
Q  375 atagattatttttagaggagaga--aatttgttacgagcttttaacnnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgc 472  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||         |||||||||||||||||||||||| |||||||||||||||||| |    
T  404272 atagattatttttagaggagagagaaatttgttacgagattttaacaaaaaaaaaatatgtttaaaacaaactaaaattccaatcatatccttgttttac 404371  T
Q  473 tatat 477  Q
    |||||    
T  404372 tatat 404376  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 12040144 - 12040247
Alignment:
Q  375 atagattatttttagagga--gagaaatttgttacgagcttttaacnnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgc 472  Q
    |||||||||||||||||||  ||||||||||||| ||| |||||||        ||||||||||||||||||||||||| ||||||||||||||||||||    
T  12040144 atagattatttttagaggaaagagaaatttgttaggagattttaacaaaaaaa-gatatgtttaaaacaaactaaaattccaatcatatccttgttttgc 12040242  T
Q  473 tatat 477  Q
    |||||    
T  12040243 tatat 12040247  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 477
Target Start/End: Original strand, 44867280 - 44867329
Alignment:
Q  428 atatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatat 477  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  44867280 atatgtttaaaacaaattaaaattccaatcatatccttgttttgctatat 44867329  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 547
Target Start/End: Original strand, 12040228 - 12040301
Alignment:
Q  474 atatccttgttttgctatatatacagaaaaactagtcttcnnnnnnncttagcctattcattattcttctctct 547  Q
    ||||||||||||||||||||||||| ||| ||||||||||       |  ||||||||| ||||||||||||||    
T  12040228 atatccttgttttgctatatatacataaagactagtcttccttttttcacagcctattcgttattcttctctct 12040301  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 375 - 477
Target Start/End: Complemental strand, 41148984 - 41148883
Alignment:
Q  375 atagattatttttagaggagagaaatttgttacgagcttttaacnnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgcta 474  Q
    |||||||||||||||||||| ||||||||||||||| ||||||         ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41148984 atagattatttttagaggagggaaatttgttacgagattttaa-taaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgcta 41148886  T
Q  475 tat 477  Q
    |||    
T  41148885 tat 41148883  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 427 - 477
Target Start/End: Original strand, 12836554 - 12836604
Alignment:
Q  427 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatat 477  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12836554 gatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatat 12836604  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 30053438 - 30053544
Alignment:
Q  375 atagattatttttagaggagaga--aatttgttacgagcttttaacnnnnnnnn--gatatgtttaaaacaaactaaaatttcaatcatatccttgtttt 470  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||          ||||||||||||||||||||||||| ||||||||||||||||||    
T  30053438 atagattatttttagaggagagagaaatttgttacgagattttaacaaaaaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgtttt 30053537  T
Q  471 gctatat 477  Q
    |||||||    
T  30053538 gctatat 30053544  T

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Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 375 - 477
Target Start/End: Complemental strand, 661744 - 661641
Alignment:
Q  375 atagattatttttagagga--gagaaatttgttacgagcttttaacnnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgc 472  Q
    |||||||||||||||||||  ||||||||||||| ||| |||||||        ||||||||||||||||||||||||| ||||||||||||||||||||    
T  661744 atagattatttttagaggaaagagaaatttgttatgagattttaacaaaaaaa-gatatgtttaaaacaaactaaaattccaatcatatccttgttttgc 661646  T
Q  473 tatat 477  Q
    |||||    
T  661645 tatat 661641  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 45031138 - 45031242
Alignment:
Q  375 atagattatttttagaggagag--aaatttgttacgagcttttaacnnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgc 472  Q
    ||||||||||||||||||||||  ||||||||||| || |||||||        ||||||||||||||||| ||||||||||||||||||||| |||||     
T  45031138 atagattatttttagaggagagggaaatttgttactagattttaacaaaaaaaagatatgtttaaaacaaaataaaatttcaatcatatccttattttgt 45031237  T
Q  473 tatat 477  Q
    |||||    
T  45031238 tatat 45031242  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 513
Target Start/End: Complemental strand, 661660 - 661621
Alignment:
Q  474 atatccttgttttgctatatatacagaaaaactagtcttc 513  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  661660 atatccttgttttgctatatatacacaaagactagtcttc 661621  T

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Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 375 - 477
Target Start/End: Complemental strand, 47794476 - 47794373
Alignment:
Q  375 atagattatttttagaggagaga--aatttgttacgagcttttaacnnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgc 472  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||        |||||||| |||||||||||||||| ||||||||||||||||||||    
T  47794476 atagattatttttagaggagagagaaatttgttacgagattttaacaaaaaag-gatatgttcaaaacaaactaaaattccaatcatatccttgttttgc 47794378  T
Q  473 tatat 477  Q
    |||||    
T  47794377 tatat 47794373  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 33812200 - 33812303
Alignment:
Q  375 atagattatttttagagga--gagaaatttgttacgagcttttaacnnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgc 472  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||         ||||||||| |||||||||||||| ||||||||||||||||||||    
T  33812200 atagattatttttagaggaaagagaaatttgttacgagattttaacataaaaat-atatgtttataacaaactaaaattccaatcatatccttgttttgc 33812298  T
Q  473 tatat 477  Q
    |||||    
T  33812299 tatat 33812303  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 33871671 - 33871774
Alignment:
Q  375 atagattatttttagagga--gagaaatttgttacgagcttttaacnnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgc 472  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||         ||||||||| |||||||||||||| ||||||||||||||||||||    
T  33871671 atagattatttttagaggaaagagaaatttgttacgagattttaacataaaaat-atatgtttataacaaactaaaattccaatcatatccttgttttgc 33871769  T
Q  473 tatat 477  Q
    |||||    
T  33871770 tatat 33871774  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 427 - 477
Target Start/End: Original strand, 17961102 - 17961152
Alignment:
Q  427 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatat 477  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17961102 gatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatat 17961152  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 477
Target Start/End: Complemental strand, 1067028 - 1066926
Alignment:
Q  375 atagattatttttagaggagaga--aatttgttacgagcttttaacnnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgc 472  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||         | |||||||||||||||||||||| ||||||||||||||||||||    
T  1067028 atagattatttttagaggagagagaaatttgttacgagattttaacaaaaaaa--aaatgtttaaaacaaactaaaattccaatcatatccttgttttgc 1066931  T
Q  473 tatat 477  Q
    |||||    
T  1066930 tatat 1066926  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 392 - 477
Target Start/End: Complemental strand, 22648816 - 22648732
Alignment:
Q  392 gagagaaatttgttacgagcttttaacnnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatat 477  Q
    ||||||||||||||||||| |||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22648816 gagagaaatttgttacgagattttaacaaaaaaa-gatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatat 22648732  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 513
Target Start/End: Complemental strand, 1066945 - 1066906
Alignment:
Q  474 atatccttgttttgctatatatacagaaaaactagtcttc 513  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  1066945 atatccttgttttgctatatatacacaaagactagtcttc 1066906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 513
Target Start/End: Complemental strand, 22648751 - 22648712
Alignment:
Q  474 atatccttgttttgctatatatacagaaaaactagtcttc 513  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  22648751 atatccttgttttgctatatatacacaaagactagtcttc 22648712  T

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