View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15485_low_5 (Length: 472)
Name: NF15485_low_5
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15485_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 65 - 441
Target Start/End: Complemental strand, 1647123 - 1646751
Alignment:
| Q |
65 |
atgattttaaattgtatttgtgttgagctcaatgattaatgaacttcaatcaaagattagttgttcgagaaaacccgagttcaaatcctgaccagaacga |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1647123 |
atgattttaaattgtatttgtgttgagctcaatgattaatgaacttcaatcaaagattaattgttcgagaaaacccgagttcaaatcctgaccagaacga |
1647024 |
T |
|
| Q |
165 |
tatttgatcagactttacttacttaccgacgacccaggtaatcatgcaaagaaaagaagagtacctgacatggaggagtgagtgtcttggaaggtctgat |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1647023 |
tatttgatcagactttacttacttaccgac----caggtaatcatgcaaagaaaagaagagtacctgacatggaggagtgagtgtcttggaaggtctgat |
1646928 |
T |
|
| Q |
265 |
gtgagtgtttttgatggagtggttacttcttgtggtgaaagtggcagaggaggtacctgcaagcatagctgacattgttccttgtggatagaaaggaagt |
364 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1646927 |
gtgagtgtttttgatggagtggttactccttgtggtgaaagtggcagaggaggtacctgcaagcatagctgacattgttccttgtggatagaaaggaagg |
1646828 |
T |
|
| Q |
365 |
acttcaacaccaaaacaactgattcttttgaagaaaataatgaataaactaaagcatgcaagaggattttaaattgt |
441 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1646827 |
aattcaacaccaaaacaactgagtcttttgaagaaaataatgaataaactaaagcatgcaagaggattttaaattgt |
1646751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 1647186 - 1647146
Alignment:
| Q |
20 |
agagccctagcaaagatgttttctgcatatacatacaatagc |
61 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1647186 |
agagccctagcaaagatgttttctgcata-acatacaatagc |
1647146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University