View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15485_low_8 (Length: 450)

Name: NF15485_low_8
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15485_low_8
NF15485_low_8
[»] chr4 (2 HSPs)
chr4 (265-430)||(2464814-2464979)
chr4 (266-432)||(6736143-6736305)
[»] chr2 (5 HSPs)
chr2 (266-432)||(2744280-2744442)
chr2 (266-421)||(45682345-45682496)
chr2 (287-432)||(28173830-28173971)
chr2 (266-399)||(11951996-11952125)
chr2 (359-428)||(28173728-28173797)
[»] chr6 (3 HSPs)
chr6 (266-432)||(29935396-29935558)
chr6 (265-346)||(31291762-31291843)
chr6 (266-309)||(29875168-29875211)
[»] scaffold0312 (1 HSPs)
scaffold0312 (266-432)||(19329-19491)
[»] chr1 (2 HSPs)
chr1 (266-432)||(411079-411241)
chr1 (285-402)||(11109830-11109943)
[»] chr3 (4 HSPs)
chr3 (287-432)||(29896333-29896474)
chr3 (266-318)||(10539958-10540010)
chr3 (293-342)||(13468623-13468672)
chr3 (266-328)||(10525627-10525689)
[»] chr8 (2 HSPs)
chr8 (266-346)||(21542381-21542461)
chr8 (276-344)||(42496796-42496864)
[»] scaffold0608 (1 HSPs)
scaffold0608 (285-402)||(5267-5380)
[»] chr7 (6 HSPs)
chr7 (287-346)||(15688623-15688682)
chr7 (287-346)||(15696216-15696275)
chr7 (287-346)||(15703196-15703255)
chr7 (283-343)||(8554772-8554832)
chr7 (402-432)||(26300005-26300035)
chr7 (301-353)||(24026049-24026101)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 265 - 430
Target Start/End: Complemental strand, 2464979 - 2464814
Alignment:
Q  265 gtgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttac 364  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2464979 gtgtcacgacccaattttaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataacacttacttac 2464880  T
Q  365 acctttctaaaatactaaaattttggtaatgactcacaagctttcaggacatttcaagatgcaagt 430  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2464879 acctttctaaaatactaaaattttggtaatgactcgcaagctttcaggacatttcaagatgcaagt 2464814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 266 - 432
Target Start/End: Original strand, 6736143 - 6736305
Alignment:
Q  266 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 365  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     |||||||    
T  6736143 tgtcacgacccaatttcaagtcatgaccggcgcacaggctaacactaactcatgatatatttagcctagcaagcctaataaactataa----cacttaca 6736238  T
Q  366 cctttctaaaatactaaaattttggtaatgactcacaagctttcaggacatttcaagatgcaagttt 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||    
T  6736239 cctttctaaaatactaaaattttggtaatgactcacaagctttcacgacatttcgagatacaagttt 6736305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 266 - 432
Target Start/End: Complemental strand, 2744442 - 2744280
Alignment:
Q  266 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||    
T  2744442 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataa----cacttaca 2744347  T
Q  366 cctttctaaaatactaaaattttggtaatgactcacaagctttcaggacatttcaagatgcaagttt 432  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||    
T  2744346 cctttctaaaatactaaaattttggtaatgactcataagctttcacgacatttaaagatacaagttt 2744280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 266 - 421
Target Start/End: Complemental strand, 45682496 - 45682345
Alignment:
Q  266 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 365  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||| ||     | ||| |    
T  45682496 tgtcacgacccaatctcaggtcatgaccggcgtacaggctaacactaactcatgataaatttaacctggcaagcctagtaaactacaa----caattaga 45682401  T
Q  366 cctttctaaaatactaaaattttggtaatgactcacaagctttcaggacatttcaa 421  Q
    |||||||||||||||||||||||||||| ||||||||  ||| ||| |||||||||    
T  45682400 cctttctaaaatactaaaattttggtaacgactcacacacttccagaacatttcaa 45682345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 287 - 432
Target Start/End: Complemental strand, 28173971 - 28173830
Alignment:
Q  287 catgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttacacctttctaaaatactaaaatt 386  Q
    ||||||| | |||||||||||||  ||||||||||| |||||||| |||||||||||||||||||||     |||||||||||| | ||||||  |||||    
T  28173971 catgaccagtgcacaggctaacaacaactcatgataaatttagcccggcaagcctaataaactataa----cacttacaccttttttaaataccgaaatt 28173876  T
Q  387 ttggtaatgactcacaagctttcaggacatttcaagatgcaagttt 432  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||    
T  28173875 ttggtaatgactcacaaactttcaagacatttcaaaatgcaagttt 28173830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 11952125 - 11951996
Alignment:
Q  266 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 365  Q
    |||||||||||||||||||| ||||| | ||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |||||  ||||    
T  11952125 tgtcacgacccaatttcaggccatgatccgcgcataggctaatactaactcataatatatatagcctggcaagcctaataaactataacactta--taca 11952028  T
Q  366 cctttctaaaatactaaaattttggtaatgactc 399  Q
      |||  |||||| | ||||||||||||||||||    
T  11952027 --ttttcaaaatattgaaattttggtaatgactc 11951996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 28173797 - 28173728
Alignment:
Q  359 acttacacctttctaaaatactaaaattttggtaatgactcacaagctttcaggacatttcaagatgcaa 428  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||| ||||||    
T  28173797 acttaaacctttctaaaataccaaaattttggtaatgactcacaaacttccaagacatttcaaaatgcaa 28173728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 8e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 266 - 432
Target Start/End: Complemental strand, 29935558 - 29935396
Alignment:
Q  266 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 365  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||    
T  29935558 tgtcacgacccaatttcaggtcatgaccggcgcataggctaacactaactcatgatatatttagcctggcaagcctaataaactataa----cacttaca 29935463  T
Q  366 cctttctaaaatactaaaattttggtaatgactcacaagctttcaggacatttcaagatgcaagttt 432  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||    
T  29935462 cctttctaaaatactaaaattttggtaatgactcaaaagctttcacgacatttaaagatacaagttt 29935396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 31291762 - 31291843
Alignment:
Q  265 gtgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataa 346  Q
    ||||||||||||||| ||| || |||||||||| | ||||||||||| |||| | ||||| ||| ||| |||||||||||||    
T  31291762 gtgtcacgacccaatctcaagttatgaccggcgtataggctaacactgactcgtcatataattaaccttgcaagcctaataa 31291843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 29875211 - 29875168
Alignment:
Q  266 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaaca 309  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||    
T  29875211 tgtcacgacccaatctcagatcatgaccggcgcacagactaaca 29875168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 266 - 432
Target Start/End: Complemental strand, 19491 - 19329
Alignment:
Q  266 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 365  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     |||| ||    
T  19491 tgtcacgacccaatttcaggccatgaccggcgcacaggctaacactaactcatgatatatttagcctgacaagcctaataaactataa----cacttgca 19396  T
Q  366 cctttctaaaatactaaaattttggtaatgactcacaagctttcaggacatttcaagatgcaagttt 432  Q
    | ||||||||||||| ||||||||||||||||||||||  |||||||||||||||| || |||||||    
T  19395 cgtttctaaaatactgaaattttggtaatgactcacaaaatttcaggacatttcaaaatacaagttt 19329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 266 - 432
Target Start/End: Original strand, 411079 - 411241
Alignment:
Q  266 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttaca 365  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     |||| ||    
T  411079 tgtcacgacccaatttcaggccatgaccggcgcacaggctaacactaactcatgatatatttagcctgacaagcctaataaactataa----cacttgca 411174  T
Q  366 cctttctaaaatactaaaattttggtaatgactcacaagctttcaggacatttcaagatgcaagttt 432  Q
    | ||||||||||||| ||||||||||||||||||||||  |||||||||||||||| || |||||||    
T  411175 cgtttctaaaatactgaaattttggtaatgactcacaaaatttcaggacatttcaaaatacaagttt 411241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 11109943 - 11109830
Alignment:
Q  285 gtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttacacctttctaaaatactaaaa 384  Q
    ||||||||||||| |||||||||||| ||||||||| | || ||| || |||||||||  |||||||||     ||||||||||||| |||||| | |||    
T  11109943 gtcatgaccggcgtacaggctaacacaaactcatgaaaaatatagtctagcaagcctaggaaactataa----cacttacacctttccaaaataatgaaa 11109848  T
Q  385 ttttggtaatgactcaca 402  Q
    |||| |||||||||||||    
T  11109847 tttttgtaatgactcaca 11109830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 287 - 432
Target Start/End: Original strand, 29896333 - 29896474
Alignment:
Q  287 catgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttacacctttctaaaatactaaaatt 386  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||  |||  || ||||||||||||||||| |||||    
T  29896333 catgaccggcgcacaggctaacactaactcatgataaatttagcctggcaagcctagtaaactataa--ctt--ttgcacctttctaaaatactgaaatt 29896428  T
Q  387 ttggtaatgactcacaagctttcaggacatttcaagatgcaagttt 432  Q
    ||||||||||||||||| | | ||  ||||||||| ||||||||||    
T  29896429 ttggtaatgactcacaaacctccataacatttcaaaatgcaagttt 29896474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 10540010 - 10539958
Alignment:
Q  266 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcat 318  Q
    |||||||||||||||| ||| ||||||||||||| |||||||| |||||||||    
T  10540010 tgtcacgacccaattttaggccatgaccggcgcataggctaaccctaactcat 10539958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 13468672 - 13468623
Alignment:
Q  293 cggcgcacaggctaacactaactcatgatatatttagcctggcaagccta 342  Q
    |||||||||||||||||||||||| | ||||| |||||||||||| ||||    
T  13468672 cggcgcacaggctaacactaactcgtaatataattagcctggcaaaccta 13468623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 10525689 - 10525627
Alignment:
Q  266 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatattta 328  Q
    ||||||||  |||||| |||||||||||||||||  ||||||| ||||||||| ||| |||||    
T  10525689 tgtcacgattcaattttaggtcatgaccggcgcatcggctaaccctaactcatcatacattta 10525627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 21542461 - 21542381
Alignment:
Q  266 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataa 346  Q
    |||||||||||||| |||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  21542461 tgtcacgacccaatctcagatcatgaccggcgcacaggctaacactgactcatcatataattagcctggcaagcctaataa 21542381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 42496864 - 42496796
Alignment:
Q  276 caatttcaggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaat 344  Q
    |||| ||| ||||||||||||||| | | ||||| ||| |||| |||||||| |||| |||||||||||    
T  42496864 caatctcaagtcatgaccggcgcatatgttaacattaattcatcatatatttggcctagcaagcctaat 42496796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 5380 - 5267
Alignment:
Q  285 gtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataaactataagacttacttacacctttctaaaatactaaaa 384  Q
    ||||||||||||| |||||||||||| ||||||||| | || ||| || |||||||||  |||||||||     ||||||||||||| |||||| | |||    
T  5380 gtcatgaccggcgtacaggctaacacaaactcatgaaaaatatagtctagcaagcctaggaaactataa----cacttacacctttccaaaataatgaaa 5285  T
Q  385 ttttggtaatgactcaca 402  Q
    |||| |||||||||||||    
T  5284 tttttgtaatgactcaca 5267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 15688682 - 15688623
Alignment:
Q  287 catgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataa 346  Q
    ||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||    
T  15688682 catgaccggcgcacaggctaatactaactcacgataaatatagcctggcaagcctaataa 15688623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 15696275 - 15696216
Alignment:
Q  287 catgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataa 346  Q
    ||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||    
T  15696275 catgaccggcgcacaggctaatactaactcacgataaatatagcctggcaagcctaataa 15696216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 15703255 - 15703196
Alignment:
Q  287 catgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaataa 346  Q
    ||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||    
T  15703255 catgaccggcgcacaggctaatactaactcacgataaatatagcctggcaagcctaataa 15703196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 8554772 - 8554832
Alignment:
Q  283 aggtcatgaccggcgcacaggctaacactaactcatgatatatttagcctggcaagcctaa 343  Q
    ||||||||||||||||||| | ||||||| |||||  ||||  ||||||||||||||||||    
T  8554772 aggtcatgaccggcgcacaagataacactcactcaacatatgattagcctggcaagcctaa 8554832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 432
Target Start/End: Original strand, 26300005 - 26300035
Alignment:
Q  402 aagctttcaggacatttcaagatgcaagttt 432  Q
    |||||||||||||||||||||||||||||||    
T  26300005 aagctttcaggacatttcaagatgcaagttt 26300035  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 24026049 - 24026101
Alignment:
Q  301 aggctaacactaactcatgatatatttagcctggcaagcctaataaactataa 353  Q
    ||||||||||| |||||| |||||||||||  | ||| |||||||||||||||    
T  24026049 aggctaacactgactcatcatatatttagctggacaatcctaataaactataa 24026101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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